-
Notifications
You must be signed in to change notification settings - Fork 12
/
Copy pathNAMESPACE
133 lines (132 loc) · 3.43 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
# Generated by roxygen2: do not edit by hand
S3method(print,giotto_plot_save_param)
export("sankeyLabel<-")
export(FSV_show)
export(addGiottoImageToSpatPlot)
export(all_plots_save_function)
export(colorRamp2)
export(combine_aes)
export(create_cluster_dendrogram)
export(dimCellPlot)
export(dimCellPlot2D)
export(dimFeatPlot2D)
export(dimFeatPlot3D)
export(dimGenePlot3D)
export(dimPlot)
export(dimPlot2D)
export(dimPlot3D)
export(dotPlot)
export(expand_feature_info)
export(geom_label_repel)
export(geom_text_repel)
export(getColors)
export(getDistinctColors)
export(getRainbowColors)
export(get_continuous_colors)
export(gg_param)
export(gg_simple_scatter)
export(giottoSankeyPlan)
export(gpsparam)
export(mixHSV)
export(mixRGB)
export(pal_names)
export(plotHeatmap)
export(plotMetaDataCellsHeatmap)
export(plotMetaDataHeatmap)
export(plotPCA)
export(plotPCA_2D)
export(plotPCA_3D)
export(plotStatDelaunayNetwork)
export(plotTSNE)
export(plotTSNE_2D)
export(plotTSNE_3D)
export(plotUMAP)
export(plotUMAP_2D)
export(plotUMAP_3D)
export(plot_grid)
export(plot_output_handler)
export(plotly_axis_scale_2D)
export(plotly_axis_scale_3D)
export(plotly_grid)
export(plotly_network)
export(sankeyLabel)
export(sankeySet)
export(sankeySetAddresses)
export(set_default_color_continuous)
export(set_default_color_continuous_CCcom_dotplot)
export(set_default_color_continuous_CCcom_heatmap)
export(set_default_color_continuous_cell)
export(set_default_color_continuous_heatmap)
export(set_default_color_continuous_poly)
export(set_default_color_discrete)
export(set_default_color_discrete_cell)
export(set_default_color_discrete_feat)
export(set_default_color_discrete_heatmap_clus)
export(set_default_color_discrete_poly)
export(set_default_cow_n_col)
export(showClusterDendrogram)
export(showClusterHeatmap)
export(showColorInstructions)
export(showSaveParameters)
export(simple_palette_factory)
export(spatCellPlot)
export(spatCellPlot2D)
export(spatDeconvPlot)
export(spatDimCellPlot)
export(spatDimCellPlot2D)
export(spatDimFeatPlot2D)
export(spatDimFeatPlot3D)
export(spatDimGenePlot3D)
export(spatDimPlot)
export(spatDimPlot2D)
export(spatDimPlot3D)
export(spatFeatPlot2D)
export(spatFeatPlot2D_single)
export(spatFeatPlot3D)
export(spatGenePlot3D)
export(spatInSituPlotDensity)
export(spatInSituPlotHex)
export(spatInSituPlotPoints)
export(spatNetwDistributions)
export(spatNetwDistributionsDistance)
export(spatNetwDistributionsKneighbors)
export(spatPlot)
export(spatPlot2D)
export(spatPlot3D)
export(subsetSankeySet)
export(theme_dark2)
export(violinPlot)
exportClasses(giottoSankeyPlan)
exportMethods("+")
exportMethods("sankeyRelate<-")
exportMethods(gg_annotation_raster)
exportMethods(sankeyPlot)
exportMethods(sankeyRelate)
import(GiottoClass)
import(GiottoUtils)
import(cowplot)
import(ggplot2)
import(ggrepel)
import(scattermore)
import(utils)
importClassesFrom(data.table,data.table)
importFrom(GiottoUtils,getDistinctColors)
importFrom(GiottoUtils,getRainbowColors)
importFrom(colorRamp2,colorRamp2)
importFrom(cowplot,plot_grid)
importFrom(data.table,dcast)
importFrom(data.table,dcast.data.table)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(igraph,as_data_frame)
importFrom(methods,new)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,slot)
importFrom(plotly,add_segments)
importFrom(scales,rescale_mid)
importFrom(stats,cov)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(terra,as.array)