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Cluster program not first on path #166

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mangstad opened this issue May 12, 2022 · 0 comments
Open

Cluster program not first on path #166

mangstad opened this issue May 12, 2022 · 0 comments

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@mangstad
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fslcluster_cmd = ['cluster',

I was trying to use the statclust_report to get peak tables from a CIFTI file. I built my singularity image using the docker2singularity command from the installation instructions. Unfortunately, in that singularity container, when the above referenced command tries to run, it's actually finding a different cluster function located at /usr/local/miniconda/bin/cluster rather than the FSL cluster command. A quick test by hardcoding the path to /usr/lib/fsl/5.0/cluster seems to work fine, so just seems the paths need to be corrected.

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