diff --git a/cmd/fleet/handleCheckin.go b/cmd/fleet/handleCheckin.go
index 10c7a74a5..f074eedac 100644
--- a/cmd/fleet/handleCheckin.go
+++ b/cmd/fleet/handleCheckin.go
@@ -246,7 +246,7 @@ func convertActions(agentId string, actions []model.Action) ([]ActionResp, strin
 			Data:      []byte(action.Data),
 			Id:        action.ActionId,
 			Type:      action.Type,
-			InputId:   action.InputId,
+			InputType: action.InputType,
 		})
 	}
 
diff --git a/cmd/fleet/main.go b/cmd/fleet/main.go
index a197ec178..730ab9f9e 100644
--- a/cmd/fleet/main.go
+++ b/cmd/fleet/main.go
@@ -474,13 +474,20 @@ func (f *FleetServer) runServer(ctx context.Context, cfg *config.Config) (err er
 
 	// Initial indices bootstrapping, needed for agents actions development
 	// TODO: remove this after the indices bootstrapping logic implemented in ES plugin
-	err = esboot.EnsureESIndices(ctx, es)
-	if err != nil {
-		return err
-	}
-	err = migrate.Migrate(ctx, sv, bulker)
-	if err != nil {
-		return err
+	bootFlag := env.GetStr(
+		"FLEET_ES_BOOT",
+		"",
+	)
+	if bootFlag == "1" {
+		log.Debug().Msg("FLEET_ES_BOOT is set to true, perform bootstrap")
+		err = esboot.EnsureESIndices(ctx, es)
+		if err != nil {
+			return err
+		}
+		err = migrate.Migrate(ctx, log.Logger, sv, bulker)
+		if err != nil {
+			return err
+		}
 	}
 
 	// Replacing to errgroup context
diff --git a/cmd/fleet/schema.go b/cmd/fleet/schema.go
index 77371b6c4..dc2de3b5c 100644
--- a/cmd/fleet/schema.go
+++ b/cmd/fleet/schema.go
@@ -123,7 +123,7 @@ type ActionResp struct {
 	Data      json.RawMessage `json:"data"`
 	Id        string          `json:"id"`
 	Type      string          `json:"type"`
-	InputId   string          `json:"input_id"`
+	InputType string          `json:"input_type"`
 }
 
 type Event struct {
diff --git a/internal/pkg/coordinator/monitor.go b/internal/pkg/coordinator/monitor.go
index 239e6ef8d..272d76f2d 100644
--- a/internal/pkg/coordinator/monitor.go
+++ b/internal/pkg/coordinator/monitor.go
@@ -6,6 +6,7 @@ package coordinator
 
 import (
 	"context"
+	"errors"
 	"net"
 	"os"
 	"runtime"
@@ -188,6 +189,10 @@ func (m *monitorT) ensureLeadership(ctx context.Context) error {
 	leaders := map[string]model.PolicyLeader{}
 	policies, err := dl.QueryLatestPolicies(ctx, m.bulker, dl.WithIndexName(m.policiesIndex))
 	if err != nil {
+		if errors.Is(err, es.ErrIndexNotFound) {
+			m.log.Debug().Str("index", m.policiesIndex).Msg(es.ErrIndexNotFound.Error())
+			return nil
+		}
 		return err
 	}
 	if len(policies) > 0 {
@@ -197,6 +202,10 @@ func (m *monitorT) ensureLeadership(ctx context.Context) error {
 		}
 		leaders, err = dl.SearchPolicyLeaders(ctx, m.bulker, ids, dl.WithIndexName(m.leadersIndex))
 		if err != nil {
+			if errors.Is(err, es.ErrIndexNotFound) {
+				m.log.Debug().Str("index", m.leadersIndex).Msg(es.ErrIndexNotFound.Error())
+				return nil
+			}
 			return err
 		}
 	}
diff --git a/internal/pkg/es/mapping.go b/internal/pkg/es/mapping.go
index dadae8870..91dd14e9a 100644
--- a/internal/pkg/es/mapping.go
+++ b/internal/pkg/es/mapping.go
@@ -24,7 +24,7 @@ const (
 		"expiration": {
 			"type": "date"
 		},
-		"input_id": {
+		"input_type": {
 			"type": "keyword"
 		},
 		"@timestamp": {
diff --git a/internal/pkg/esboot/bootstrap.go b/internal/pkg/esboot/bootstrap.go
index 614d500d6..9906a8f52 100644
--- a/internal/pkg/esboot/bootstrap.go
+++ b/internal/pkg/esboot/bootstrap.go
@@ -6,8 +6,8 @@ package esboot
 
 import (
 	"context"
-	"github.com/elastic/fleet-server/v7/internal/pkg/es"
 
+	"github.com/elastic/fleet-server/v7/internal/pkg/es"
 	"github.com/elastic/go-elasticsearch/v8"
 )
 
@@ -20,6 +20,8 @@ type indexConfig struct {
 }
 
 var indexConfigs = map[string]indexConfig{
+	// Commenting out the boostrapping for now here, just in case if it needs to be "enabled" again.
+	// Will remove all the boostrapping code completely later once all is fully integrated
 	".fleet-actions":             {mapping: es.MappingAction},
 	".fleet-actions-results":     {mapping: es.MappingActionResult, datastream: true},
 	".fleet-agents":              {mapping: es.MappingAgent},
diff --git a/internal/pkg/migrate/migrate.go b/internal/pkg/migrate/migrate.go
index dbcc8cb83..f18a4bde0 100644
--- a/internal/pkg/migrate/migrate.go
+++ b/internal/pkg/migrate/migrate.go
@@ -7,10 +7,14 @@ package migrate
 import (
 	"context"
 	"encoding/json"
+	"errors"
+
 	"github.com/elastic/fleet-server/v7/internal/pkg/bulk"
 	"github.com/elastic/fleet-server/v7/internal/pkg/dl"
+	"github.com/elastic/fleet-server/v7/internal/pkg/es"
 	"github.com/elastic/fleet-server/v7/internal/pkg/model"
 	"github.com/elastic/fleet-server/v7/internal/pkg/saved"
+	"github.com/rs/zerolog"
 )
 
 type enrollmentApiKey struct {
@@ -29,11 +33,11 @@ type enrollmentApiKey struct {
 // This is for development only (1 instance of fleet)
 // Not safe for multiple instances of fleet
 // Initially needed to migrate the enrollment-api-keys that kibana creates
-func Migrate(ctx context.Context, sv saved.CRUD, bulker bulk.Bulk) error {
-	return MigrateEnrollmentAPIKeys(ctx, sv, bulker)
+func Migrate(ctx context.Context, log zerolog.Logger, sv saved.CRUD, bulker bulk.Bulk) error {
+	return MigrateEnrollmentAPIKeys(ctx, log, sv, bulker)
 }
 
-func MigrateEnrollmentAPIKeys(ctx context.Context, sv saved.CRUD, bulker bulk.Bulk) error {
+func MigrateEnrollmentAPIKeys(ctx context.Context, log zerolog.Logger, sv saved.CRUD, bulker bulk.Bulk) error {
 
 	// Query all enrollment keys from the new schema
 	raw, err := dl.RenderAllEnrollmentAPIKeysQuery(1000)
@@ -42,12 +46,21 @@ func MigrateEnrollmentAPIKeys(ctx context.Context, sv saved.CRUD, bulker bulk.Bu
 	}
 
 	var recs []model.EnrollmentApiKey
+	var resHits []es.HitT
 	res, err := bulker.Search(ctx, []string{dl.FleetEnrollmentAPIKeys}, raw, bulk.WithRefresh())
 	if err != nil {
-		return err
+		if errors.Is(err, es.ErrIndexNotFound) {
+			log.Debug().Str("index", dl.FleetEnrollmentAPIKeys).Msg(es.ErrIndexNotFound.Error())
+			// Continue with migration if the .fleet-enrollment-api-keys index is not found
+			err = nil
+		} else {
+			return err
+		}
+	} else {
+		resHits = res.Hits
 	}
 
-	for _, hit := range res.Hits {
+	for _, hit := range resHits {
 		var rec model.EnrollmentApiKey
 		err := json.Unmarshal(hit.Source, &rec)
 		if err != nil {
diff --git a/internal/pkg/model/schema.go b/internal/pkg/model/schema.go
index 8f66bee5e..1d9c7e101 100644
--- a/internal/pkg/model/schema.go
+++ b/internal/pkg/model/schema.go
@@ -45,8 +45,8 @@ type Action struct {
 	// The action expiration date/time
 	Expiration string `json:"expiration,omitempty"`
 
-	// The input identifier the actions should be routed to.
-	InputId string `json:"input_id,omitempty"`
+	// The input type the actions should be routed to.
+	InputType string `json:"input_type,omitempty"`
 
 	// Date/time the action was created
 	Timestamp string `json:"@timestamp,omitempty"`
diff --git a/internal/pkg/monitor/monitor.go b/internal/pkg/monitor/monitor.go
index 78df63db9..bdea51fce 100644
--- a/internal/pkg/monitor/monitor.go
+++ b/internal/pkg/monitor/monitor.go
@@ -8,6 +8,7 @@ import (
 	"bytes"
 	"context"
 	"encoding/json"
+	"errors"
 	"sync/atomic"
 	"time"
 
@@ -291,7 +292,15 @@ func (m *simpleMonitorT) search(ctx context.Context, tmpl *dsl.Tmpl, params map[
 	}
 
 	if res.IsError() {
-		return nil, es.TranslateError(res.StatusCode, esres.Error)
+		err = es.TranslateError(res.StatusCode, esres.Error)
+	}
+
+	if err != nil {
+		if errors.Is(err, es.ErrIndexNotFound) {
+			m.log.Debug().Str("index", m.index).Msg(es.ErrIndexNotFound.Error())
+			return nil, nil
+		}
+		return nil, err
 	}
 
 	return esres.Hits.Hits, nil
diff --git a/internal/pkg/policy/monitor.go b/internal/pkg/policy/monitor.go
index 52724a231..e647bb612 100644
--- a/internal/pkg/policy/monitor.go
+++ b/internal/pkg/policy/monitor.go
@@ -18,6 +18,7 @@ import (
 
 	"github.com/elastic/fleet-server/v7/internal/pkg/bulk"
 	"github.com/elastic/fleet-server/v7/internal/pkg/dl"
+	"github.com/elastic/fleet-server/v7/internal/pkg/es"
 	"github.com/elastic/fleet-server/v7/internal/pkg/model"
 	"github.com/elastic/fleet-server/v7/internal/pkg/monitor"
 )
@@ -125,6 +126,10 @@ LOOP:
 func (m *monitorT) process(ctx context.Context) error {
 	policies, err := m.policyF(ctx, m.bulker, dl.WithIndexName(m.policiesIndex))
 	if err != nil {
+		if errors.Is(err, es.ErrIndexNotFound) {
+			m.log.Debug().Str("index", m.policiesIndex).Msg(es.ErrIndexNotFound.Error())
+			return nil
+		}
 		return err
 	}
 	if len(policies) == 0 {
diff --git a/internal/pkg/testing/actions.go b/internal/pkg/testing/actions.go
index 2bea9a4dc..63e66dd87 100644
--- a/internal/pkg/testing/actions.go
+++ b/internal/pkg/testing/actions.go
@@ -9,12 +9,13 @@ package testing
 import (
 	"context"
 	"encoding/json"
+	"testing"
+	"time"
+
 	"github.com/elastic/fleet-server/v7/internal/pkg/bulk"
 	"github.com/elastic/fleet-server/v7/internal/pkg/es"
 	"github.com/elastic/fleet-server/v7/internal/pkg/model"
 	"github.com/elastic/fleet-server/v7/internal/pkg/rnd"
-	"testing"
-	"time"
 
 	"github.com/gofrs/uuid"
 	"github.com/rs/xid"
@@ -60,7 +61,7 @@ func CreateRandomActions(min, max int) ([]model.Action, error) {
 			Timestamp:  r.Time(now, 2, 5, time.Second, rnd.TimeBefore).Format(time.RFC3339),
 			Expiration: r.Time(now, 12, 25, time.Minute, rnd.TimeAfter).Format(time.RFC3339),
 			Type:       "APP_ACTION",
-			InputId:    "osquery",
+			InputType:  "osquery",
 			Agents:     aid,
 			Data:       data,
 		}
diff --git a/model/schema.json b/model/schema.json
index 686c23124..caa3254ca 100644
--- a/model/schema.json
+++ b/model/schema.json
@@ -33,8 +33,8 @@
           "description": "The action type. APP_ACTION is the value for the actions that suppose to be routed to the endpoints/beats.",
           "type": "string"
         },
-        "input_id": {
-          "description": "The input identifier the actions should be routed to.",
+        "input_type": {
+          "description": "The input type the actions should be routed to.",
           "type": "string"
         },
         "agents": {