All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
- VCF outputs are malformed if only one variant is called, this is now corrected
- Increased maximum allowed total size of global variables in QDNAseq Rscript
- wf-cnv is now deprecated and will no longer receive updates, please use wf-human-variation
- --genome parameter no longer required (determined from reference or BAM)
- Updated CI command to produce improved report
- Report updated to use histogram function from ezcharts
- Workflow can now take BAM as input, as well as FASTQ
- sample_sheet format in schema to expect a file
- Documentation update
- Updated description in manifest
- Documentation update
- Documentation update
--sample_sheetis now a path in the schema
--map_threadsdefault is now 8 cores- Docs update
- QDNAseq R script no longer carries out separate female sample analysis
- Prevented running with conda profile
- Docs update
- nextflow config fix
- Increased memory from 8G -> 16G
- CPU limit for alignment
- CNV calling with QDNAseq