From 9cdce73468536ec9d7720d517bd7cba70ea30d03 Mon Sep 17 00:00:00 2001 From: "Mitchell R. Vollger" Date: Wed, 10 Jan 2024 07:07:57 -0800 Subject: [PATCH] Release fibertools-rs v0.3.7 --- CHANGELOG.md | 173 +++++++++++++++++++++++++++++++++++++++------------ 1 file changed, 132 insertions(+), 41 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 64a68e02..e607c415 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,39 +5,19 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and the project tries but probably doesn't to adhere to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## 0.3.6 (2024-01-10) - - - - - - - - - - - - - - +## 0.3.7 (2024-01-10) ### Chore - - update - -### Other - - - adding code outline for footprinting tool - - cli - - clippy - -### Bug Fixes - - - allow for the unaligned read start and read end - - allow for the unaligned read start and read end - - make an iterator for fiberseq records - - try and better use threads. - - try and better use threads. + - add trace to ml mm parser + - update. + - update. + - update. + - update. + - update. + - update. + - update. + - update. ### New Features @@ -81,23 +61,25 @@ and the project tries but probably doesn't to adhere to [Semantic Versioning](ht - add hp tag to center - add hp tag to center -### Chore +### Bug Fixes - - add trace to ml mm parser - - update. - - update. - - update. - - update. - - update. - - update. - - update. - - update. + - allow for the unaligned read start and read end + - allow for the unaligned read start and read end + - make an iterator for fiberseq records + - try and better use threads. + - try and better use threads. + +### Other + + - adding code outline for footprinting tool + - cli + - clippy ### Commit Statistics - - 70 commits contributed to the release over the course of 81 calendar days. + - 72 commits contributed to the release over the course of 81 calendar days. - 93 days passed between releases. - 56 commits were understood as [conventional](https://www.conventionalcommits.org). - 0 issues like '(#ID)' were seen in commit messages @@ -109,6 +91,8 @@ and the project tries but probably doesn't to adhere to [Semantic Versioning](ht
view details * **Uncategorized** + - Clippy ([`1f27489`](https://github.com/fiberseq/fibertools-rs/commit/1f2748914d155e8f55409df9ae9c161c5b3cf562)) + - Release fibertools-rs v0.3.6 ([`2f4a9ce`](https://github.com/fiberseq/fibertools-rs/commit/2f4a9ce4a5fc0c98fe78803eaad7aca3e5765d72)) - Clippy ([`ca10f3e`](https://github.com/fiberseq/fibertools-rs/commit/ca10f3eb018e1186f4713e1ce47b2ba777c5ec63)) - Paths ([`78e9b44`](https://github.com/fiberseq/fibertools-rs/commit/78e9b448b1ede8a14d02649e8e3360eed6521c3c)) - Release fibertools-rs v0.3.6 ([`cf6891e`](https://github.com/fiberseq/fibertools-rs/commit/cf6891e61aaa2f14b382dc10e48214cb0c4e02ae)) @@ -181,6 +165,113 @@ and the project tries but probably doesn't to adhere to [Semantic Versioning](ht - Update. ([`ff5759e`](https://github.com/fiberseq/fibertools-rs/commit/ff5759efc4a11580d585abe52f4fbe97b44f948e))
+## 0.3.6 (2023-10-09) + + + + + + + + + + + + + + + +### Chore + + - update + +### Other + + - adding code outline for footprinting tool + - cli + - clippy + +### Bug Fixes + + - allow for the unaligned read start and read end + - allow for the unaligned read start and read end + - make an iterator for fiberseq records + - try and better use threads. + - try and better use threads. + +### New Features + + - FIRE extract update + - FIRE extract update + - Adding a fire bed+ extract for the fire pipeline. + - FIRE now works in fibertools! TODO add info to extract, etc. + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - adding rle information to fire feats + - update fire model + - use threads better, fire feats + - use threads better, fire feats + - use threads better, fire feats + - use threads better, fire feats + - start working on decorators + - start working on decorators + - FIRE io + - Speed up writing FIRE results + - add a min ML options to add-nucs and keep working on FIRE predictions + - fire progress indicator. + - Add ability to print FIRE features to a text file, TODO predict FIREs in rust. + - Move prediction into a feature only avalible through Cargo, since bioocnda wont let me do large installs anymore. + - add simplify options to center + - add hp tag to center + - add hp tag to center + +### Chore + + - add trace to ml mm parser + - update. + - update. + - update. + - update. + - update. + - update. + - update. + - update. + +### Commit Statistics + + + + - 2 commits contributed to the release. + - 1 commit was understood as [conventional](https://www.conventionalcommits.org). + - 0 issues like '(#ID)' were seen in commit messages + +### Commit Details + + + +
view details + + * **Uncategorized** + - Release fibertools-rs v0.3.6 ([`fd321d9`](https://github.com/fiberseq/fibertools-rs/commit/fd321d9a60f64f919061b68701e7c90a6f420140)) + - Update ([`32e9121`](https://github.com/fiberseq/fibertools-rs/commit/32e9121f47e62e20b38600198f2f3fac3a4c88d6)) +
+ ## 0.3.5 (2023-10-09)