From e4510e0e8ba22d74845d95531ccb185055447436 Mon Sep 17 00:00:00 2001 From: "Mitchell R. Vollger" Date: Thu, 30 Nov 2023 14:42:59 -0800 Subject: [PATCH] feat: adding rle information to fire feats --- models/FIRE.conf.json | 2 +- models/FIRE.gbdt.json | 93526 ++++++++++++++++++++++++---------------- src/fire.rs | 6 +- 3 files changed, 57455 insertions(+), 36079 deletions(-) diff --git a/models/FIRE.conf.json b/models/FIRE.conf.json index 32d0612c..3d06338f 100644 --- a/models/FIRE.conf.json +++ b/models/FIRE.conf.json @@ -1 +1 @@ -{"columns":["mokapot score","mokapot 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"yes": 15, "no": 16, "missing": 15, "children": [ + { "nodeid": 15, "depth": 4, "split": 24, "split_condition": 0.924084067, "yes": 25, "no": 26, "missing": 25, "children": [ + { "nodeid": 25, "leaf": 0.0142422197 }, + { "nodeid": 26, "leaf": -0.0112427883 } + ]}, + { "nodeid": 16, "leaf": -0.0251820628 } + ]} ]} ]} ]} diff --git a/src/fire.rs b/src/fire.rs index 265394f4..40b0cdc5 100644 --- a/src/fire.rs +++ b/src/fire.rs @@ -143,7 +143,11 @@ fn get_m6a_rle_data(rec: &FiberseqData, start: i64, end: i64) -> (f32, f32, f32) } let mid_length = m6a_rles.len() / 2; let (_, median, _) = m6a_rles.select_nth_unstable(mid_length); - (max as f32, max_pos as f32, *median as f32) + ( + max as f32 / (end - start) as f32, + max_pos as f32, + *median as f32, + ) } #[derive(Debug)]