Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Extracting all fit parameters #371

Open
iveta-ivanova opened this issue Feb 26, 2021 · 4 comments
Open

Extracting all fit parameters #371

iveta-ivanova opened this issue Feb 26, 2021 · 4 comments

Comments

@iveta-ivanova
Copy link

After the fitting procedure, is there any way to extract a list/matrix with the actual estimated parameter values (i.e. all the lifetimes and contributions), so the user can have access to the original fit data to perform their own analysis? Exporting the TIFF files seems to give RGB images.

@imunro
Copy link
Contributor

imunro commented Mar 6, 2021

Aplogies for the slow response.
File->Export Fit Resuts Table should do what you want.

@iveta-ivanova
Copy link
Author

Thank you for the reply, don't worry! Fit results table is very useful to get all the averages and errors etc of each parameter, I meant of a way to extract for each parameter all of the values within the image, that are obtained in each pixel/binned area in the first instance, before they are averaged out. But don't worry, I'll try to find some way to get them :)

@seanwarren
Copy link
Member

Hello, when you export parameter images (not intensity merged) you will get two tiff files, one RGB and one with a _raw.tiff extension. The raw version contains the real floating point parameter (eg tau, I) values which can be loaded by ImageJ, Matlab etc. Let me know if you have any trouble.

thanks,
Sean

@iveta-ivanova
Copy link
Author

iveta-ivanova commented Mar 10, 2021

Hello, when you export parameter images (not intensity merged) you will get two tiff files, one RGB and one with a _raw.tiff extension. The raw version contains the real floating point parameter (eg tau, I) values which can be loaded by ImageJ, Matlab etc. Let me know if you have any trouble.

thanks,
Sean

Thanks, this is exactly what I need! :) I was extracting the intensity-merged images instead..

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants