From fc5341fd4e06fc27d44331af7a4cc7b26985de0e Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Fri, 10 Nov 2023 09:55:35 +0100 Subject: [PATCH 1/6] Update sqlmodel to 0.0.11 --- poetry.lock | 14 +++++++------- pyproject.toml | 2 +- 2 files changed, 8 insertions(+), 8 deletions(-) diff --git a/poetry.lock b/poetry.lock index 459f5cd29d..e5d2e792cf 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2118,18 +2118,18 @@ typing-extensions = ">=3.7.4" [[package]] name = "sqlmodel" -version = "0.0.8" +version = "0.0.11" description = "SQLModel, SQL databases in Python, designed for simplicity, compatibility, and robustness." optional = false -python-versions = ">=3.6.1,<4.0.0" +python-versions = ">=3.7,<4.0" files = [ - {file = "sqlmodel-0.0.8-py3-none-any.whl", hash = "sha256:0fd805719e0c5d4f22be32eb3ffc856eca3f7f20e8c7aa3e117ad91684b518ee"}, - {file = "sqlmodel-0.0.8.tar.gz", hash = "sha256:3371b4d1ad59d2ffd0c530582c2140b6c06b090b32af9b9c6412986d7b117036"}, + {file = "sqlmodel-0.0.11-py3-none-any.whl", hash = "sha256:bc0d64c4b901d919d2f16bbd79aefb07cb268c29f7c1dd83a84758772ccc95c6"}, + {file = "sqlmodel-0.0.11.tar.gz", hash = "sha256:fc33abbf7ec29caafabe3d0e1db61e33597857a289e5fd1ecdb91be702b26084"}, ] [package.dependencies] -pydantic = ">=1.8.2,<2.0.0" -SQLAlchemy = ">=1.4.17,<=1.4.41" +pydantic = ">=1.9.0,<2.0.0" +SQLAlchemy = ">=1.4.36,<2.0.0" sqlalchemy2-stubs = "*" [[package]] @@ -2300,4 +2300,4 @@ slurm = ["cloudpickle", "clusterfutures"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "ef6d9e74ed93b67eaaf8ebe125573865672c57232bc2efeb1a53869eacf49f02" +content-hash = "8a81731248d501a9d7de382f675ac1a0585a241909432705e8966a7d7b4a8166" diff --git a/pyproject.toml b/pyproject.toml index 0be372856b..6d842183f7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,7 +24,7 @@ exclude = [ python = "^3.9" python-dotenv = "^0.20.0" fastapi = "^0.103.0" -sqlmodel = "^0.0.8" +sqlmodel = "^0.0.11" aiosqlite = "^0.17.0" fastapi-users = {extras = ["oauth"], version = "^12.1.0"} alembic = "^1.9.1" From e4ce2517d332b447ac63ca95163a839673da1cec Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Fri, 10 Nov 2023 10:01:33 +0100 Subject: [PATCH 2/6] Remove unused `nullable` attribute In recent sqlmodel versions this raises an error --- fractal_server/app/models/job.py | 1 - fractal_server/app/models/state.py | 1 - 2 files changed, 2 deletions(-) diff --git a/fractal_server/app/models/job.py b/fractal_server/app/models/job.py index 134fd90c70..92fbdc704a 100644 --- a/fractal_server/app/models/job.py +++ b/fractal_server/app/models/job.py @@ -114,7 +114,6 @@ class Config: start_timestamp: datetime = Field( default_factory=get_timestamp, - nullable=False, sa_column=Column(DateTime(timezone=True)), ) end_timestamp: Optional[datetime] = Field( diff --git a/fractal_server/app/models/state.py b/fractal_server/app/models/state.py index 025e8b18c8..9c40fba72c 100644 --- a/fractal_server/app/models/state.py +++ b/fractal_server/app/models/state.py @@ -31,6 +31,5 @@ class State(_StateBase, SQLModel, table=True): data: dict[str, Any] = Field(sa_column=Column(JSON), default={}) timestamp: datetime = Field( default_factory=get_timestamp, - nullable=False, sa_column=Column(DateTime(timezone=True)), ) From 9325e4c4920f1a0710baf9b326d5e26c90dd03cb Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Fri, 10 Nov 2023 10:04:16 +0100 Subject: [PATCH 3/6] Use new engine for each test --- tests/fixtures_server.py | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/tests/fixtures_server.py b/tests/fixtures_server.py index 0736f50f6e..35cb0e57f2 100644 --- a/tests/fixtures_server.py +++ b/tests/fixtures_server.py @@ -171,6 +171,14 @@ async def db_create_tables(override_settings): from fractal_server.app.db import DB from fractal_server.app.models import SQLModel + # Calling set_db guarantees that a new pair of sync/async engines is + # created every time. This is needed for our Postgresql-based CI, due to + # the presence of Enums. See + # https://github.com/fractal-analytics-platform/fractal-server/pull/934#issuecomment-1782842865 + # and + # https://docs.sqlalchemy.org/en/14/dialects/postgresql.html#prepared-statement-cache. + DB.set_db() + engine = DB.engine_sync() metadata = SQLModel.metadata metadata.create_all(engine) @@ -178,6 +186,7 @@ async def db_create_tables(override_settings): yield metadata.drop_all(engine) + engine.dispose() @pytest.fixture From 2282f4f3ba44b714d5678ef86b5957595fc51aa2 Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Fri, 10 Nov 2023 10:04:56 +0100 Subject: [PATCH 4/6] Update CHANGELOG --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9eb994e24e..861ef805be 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,8 @@ * Improve delete-resource endpoint (\#943). * Expose JSON Schema for the `ManifestV1` Pydantic model (\#942). +* Dependencies: + * Uprgrade sqlmodel to 0.0.11 (\#949). * Testing: * Fix bug in local tests with Docker/SLURM (\#948). From 1dc38f484bda6c14559a86b1421ee22818ef3c3c Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Fri, 10 Nov 2023 10:05:27 +0100 Subject: [PATCH 5/6] Fix typo in CHANGELOG --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 861ef805be..eb222df44e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,7 +5,7 @@ * Improve delete-resource endpoint (\#943). * Expose JSON Schema for the `ManifestV1` Pydantic model (\#942). * Dependencies: - * Uprgrade sqlmodel to 0.0.11 (\#949). + * Upgrade sqlmodel to 0.0.11 (\#949). * Testing: * Fix bug in local tests with Docker/SLURM (\#948). 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