diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 7096ee23..2c4e3037 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -9,10 +9,10 @@ permissions: jobs: testing: - runs-on: ubuntu-latest + runs-on: ubuntu-24.04 strategy: matrix: - PYTHON_VERSION: ["3.8", "3.9", "3.10", "3.11", "3.12"] + PYTHON_VERSION: ["3.9", "3.10", "3.11", "3.12"] steps: - uses: actions/checkout@v2 diff --git a/.github/workflows/readthedocs.yaml b/.github/workflows/readthedocs.yaml index b414b852..a960af4e 100644 --- a/.github/workflows/readthedocs.yaml +++ b/.github/workflows/readthedocs.yaml @@ -13,7 +13,7 @@ permissions: jobs: documentation-links: - runs-on: ubuntu-latest + runs-on: ubuntu-24.04 steps: - uses: readthedocs/actions/preview@v1 with: diff --git a/README.md b/README.md index ab6d7800..aa51094b 100644 --- a/README.md +++ b/README.md @@ -37,7 +37,7 @@ `pip install fgpyo` -**Requires python 3.8+** +**Requires python 3.9+** See documentation on [fgpyo.readthedocs.org][rtd-link]. @@ -48,7 +48,7 @@ See documentation on [fgpyo.readthedocs.org][rtd-link]. A simple way to create an environment with the desired version of python and poetry is to use [conda][conda-link]. E.g.: ```bash -conda create -n fgpyo -c conda-forge "python>=3.8" poetry +conda create -n fgpyo -c conda-forge "python>=3.9" poetry conda activate fgpyo # --all-extras is required to install `mkdocs` and associated dependencies, diff --git a/fgpyo/util/inspect.py b/fgpyo/util/inspect.py index a2f655be..c75b5778 100644 --- a/fgpyo/util/inspect.py +++ b/fgpyo/util/inspect.py @@ -71,10 +71,9 @@ def get_attr_fields_dict(cls: type) -> Dict[str, dataclasses.Field]: # type: ig if TYPE_CHECKING: # pragma: no cover from _typeshed import DataclassInstance else: - # https://github.com/python/typeshed/blob/727f3c4320d2af3af2f16695e24dd78e79b7c070/stdlib/_typeshed/__init__.pyi#L348 - # TODO: update the hint to `Field[Any]` when we drop support for 3.8 + class DataclassInstance(Protocol): - __dataclasses_fields__: ClassVar[Dict[str, dataclasses.Field]] + __dataclasses_fields__: ClassVar[Dict[str, dataclasses.Field[Any]]] if TYPE_CHECKING and _use_attr: # pragma: no cover @@ -458,7 +457,7 @@ def attr_from( # True, because python, so we need to check for that explicitly if not set_value and attribute.type is not None and not attribute.type == bool: try: - return_value = attribute.type(str_value) + return_value = attribute.type(str_value) # type: ignore[operator] set_value = True except (ValueError, TypeError): pass diff --git a/mkdocs.yml b/mkdocs.yml index 6d1b5ef3..f2bb3990 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -13,7 +13,8 @@ theme: collapse_navigation: false repo_url: https://github.com/fulcrumgenomics/fgpyo plugins: - - autorefs + - autorefs: + resolve_closest: true - include-markdown - search - gen-files: diff --git a/poetry.lock b/poetry.lock index e877aede..926207d6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,175 +1,172 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - -[[package]] -name = "astunparse" -version = "1.6.3" -description = "An AST unparser for Python" -optional = false -python-versions = "*" -files = [ - {file = "astunparse-1.6.3-py2.py3-none-any.whl", hash = "sha256:c2652417f2c8b5bb325c885ae329bdf3f86424075c4fd1a128674bc6fba4b8e8"}, - {file = "astunparse-1.6.3.tar.gz", hash = "sha256:5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872"}, -] - -[package.dependencies] -six = ">=1.6.1,<2.0" -wheel = ">=0.23.0,<1.0" +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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