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_config.yml
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markdown: kramdown
encoding: "utf-8"
sass:
sass_dir: css
style: compressed
widgets:
- name: ggQQunif
thumbnail: images/ggQQunif.png
url: https://github.com/rcorty/ggQQunif
ghuser: rcorty
ghrepo: ggQQunif
tags: visualization,quantiles,p-values,statistics,big data
cran: true
ghauthor: rcorty
short: >
Make QQ plots for big data expected to be uniformly distributed, e.g. p-values.
description: >
For "big data" applications, we often have thousands or millions of p-values.
The QQ-plot is a standard way to evaluate them, but can be horrifyingly slow when there are many p-values.
This package computes where all the points would go in the naive implementation, then thins them strategically to greatly reduce overplotting, resulting in much faster plotting.
- name: ggupset
thumbnail: images/ggupset.png
url: https://github.com/const-ae/ggupset
ghuser: const-ae
ghrepo: ggupset
tags: visualization,upset,combination matrix
cran: true
ghauthor: const-ae
short: >
Combination Matrix Axis for 'ggplot2' to Create 'UpSet' Plots
description: >
Replace the standard x-axis in 'ggplots' with a combination matrix
to visualize complex set overlaps. 'UpSet' has introduced a new way to visualize
the overlap of sets as an alternative to Venn diagrams.
This package provides a simple way to produce such plots using 'ggplot2'.
In addition it can convert any categorical axis into a combination
matrix axis.
- name: xmrr
thumbnail: images/xmr_chart.png
url: https://github.com/Zanidean/xmrr
ghuser: Zanidean
ghrepo: xmrr
tags: XmR, Visualization, Control Charts, QC, XBar
cran: true
ghauthor: Alex Zanidean
short: >
Generate XMR Control Chart Data from Time-Series Data.
description: >
Use xmr() for XmR data which re-calculates to signal true change, and use xmr_chart() for XmR style control charts with recalculated process limits.
- name: gg3D
thumbnail: images/gg3D.png
url: https://github.com/AckerDWM/gg3D
ghuser: AckerDWM
ghrepo: gg3D
tags: 3D, Visualization
cran: false
ghauthor: Daniel Acker
short: >
3D perspective plots for ggplot2
description: >
gg3D adds 3D axes, 3D perspective projections with arbitrary rotations, and 3D wireframe plots to ggplot.
- name: ggQC
thumbnail: images/ggQC.png
url: https://github.com/kenithgrey/ggQC
ghuser: kenithgrey
ghrepo: ggQC
tags: QC, XmR, XbarR, SixSigma, Visualization
cran: true
ghauthor: Kenith Grey
short: >
Use ggQC to plot single, faceted and multi-layered quality control charts .
description: >
ggQC is used to create single, faceted, or multi-layered quality control charts using functions stat_QC(), stat_QC_lines() and stat_mR(). Supported charts include XmR, XbarR, n, c, p, np and more.
- name: ggdist
thumbnail: images/ggdist.png
url: https://mjskay.github.io/ggdist
ghuser: mjskay
ghrepo: ggdist
tags: visualization,uncertainty,confidence,probability
cran: true
ghauthor: mjskay
short: >
'ggdist' provides stats and geoms for visualizing distributions and uncertainty.
description: >
'ggdist' provides stats and geoms for visualizing distributions that are particularly tuned for
visualizing uncertainty in either a frequentist or Bayesian mode. Both analytical distributions (such as
frequentist confidence distributions or Bayesian priors) and distributions represented as samples (such as
bootstrap distributions or Bayesian posterior samples) are easily visualized. Visualization primitives include
but are not limited to: points with multiple uncertainty intervals, eye plots,
density plots, gradient plots, dot plots, quantile dot plots,
complementary cumulative distribution function (CCDF) barplots,
and fit curves with multiple uncertainty ribbons.
- name: ggedit
thumbnail: images/ggedit.png
url: https://github.com/metrumresearchgroup/ggedit
ghuser: metrumresearchgroup
ghrepo: ggedit
tags: visualization, interactive, shiny, general,themes
cran: true
ghauthor: yonicd
short: >
ggedit is aimed to interactively edit ggplot layers, scales and themes aesthetics
description: >
ggedit is aimed to allows novice and expert ggplot2 users to interactively edit ggplot layers, scales and themes aesthetics, while returning objects and scripts of updated plots using shiny gadgets and modules.
- name: ggpage
thumbnail: images/ggpage.png
url: https://emilhvitfeldt.github.io/ggpage/
ghuser: emilhvitfeldt
ghrepo: ggpage
tags: visualization,text
cran: true
ghauthor: emilhvitfeldt
short: >
Creates Page Layout Visualizations.
description: >
Facilitates the creation of page layout
visualizations in which words are represented as rectangles with sizes
relating to the length of the words. Which then is divided in lines
and pages for easy overview of up to quite large texts.
- name: ggpca
thumbnail: images/ggpca.png
url: https://cran.r-project.org/web/packages/ggpca/index.html
ghuser: YaoxiangLi
ghrepo: ggpca
tags: visualization,dimensionality_reduction,PCA,t-SNE,UMAP
cran: true
ghauthor: Yaoxiang Li
short: >
Provides tools for creating publication-ready PCA, t-SNE, and UMAP plots.
description: >
`ggpca` offers publication-ready dimensionality reduction plots, including Principal Component Analysis (PCA),
t-Distributed Stochastic Neighbor Embedding (t-SNE), and Uniform Manifold Approximation and Projection (UMAP).
Designed for high-dimensional data visualization, it includes options for custom labels, density plots, and faceting,
and is built on the 'ggplot2' framework. Useful for researchers and data scientists in various fields for efficient
and insightful data visualization.
- name: ggbreak
thumbnail: images/ggbreak.png
url: https://github.com/YuLab-SMU/ggbreak
ghuser: YuLab-SMU
ghrepo: ggbreak
tags: visualization, geoms
cran: true
ghauthor: YuLab-SMU
short: >
Set Axis Break for 'ggplot2'
description: >
An implementation of scale functions for setting axis breaks of a 'gg' plot.
- name: ggimg
thumbnail: images/ggimg.png
url: https://github.com/statsmaths/ggimg
ghuser: statsmaths
ghrepo: ggimg
tags: visualization, geoms
cran: true
ghauthor: statsmaths
short: >
Graphics Layers for Plotting Image Data with ggplot2.
description: >
Provides two new layer types for displaying image data as layers
within the Grammar of Graphics framework. Displays images using either a
rectangle interface, with a fixed bounding box, or a point interface using a
central point and general size parameter. Images can be given as local
JPEG or PNG files, external resources, or as a list column containing
raster image data.
- name: gganatogram
thumbnail: images/gganatogram.png
url: https://github.com/jespermaag/gganatogram
ghuser: jespermaag
ghrepo: gganatogram
tags: anatograms, tissue, visualization, anatomy, expression, pharmacology
cran: false
ghauthor: jespermaag
short: >
gganatogram makes it possible to visualise tissues for different organisms
or cell compartments.
description: >
gganatogram is aimed to users who would like to visualise certain organs
or cell compartments based on values, or to highlight tissues. This can be
useful when the user easily want to display tissue information e.g. RNA-seq,
pharmacology or mutations per tissue.
- name: ggforce
thumbnail: images/ggforce.png
url: https://github.com/thomasp85/ggforce
ghuser: thomasp85
ghrepo: ggforce
tags: visualization,general
cran: true
ghauthor: thomasp85
short: >
ggforce is aimed at providing missing functionality to ggplot2 through the extension system introduced with ggplot2 v2.0.0.
description: >
- name: ggalt
thumbnail: images/ggalt.png
url: https://github.com/hrbrmstr/ggalt
ghuser: hrbrmstr
ghrepo: ggalt
tags: visualization,general
cran: true
ghauthor: hrbrmstr
short: >
A compendium of ‘geoms’, ‘coords’ and ‘stats’ for ‘ggplot2’.
description: >
A compendium of ‘geoms’, ‘coords’ and ‘stats’ for ‘ggplot2’, including splines, 1d and 2d densities, univariate average shifted histograms and a new map coordinate system based on the ‘PROJ.4’-library.
- name: ggiraph
thumbnail: images/ggiraph.png
url: https://github.com/davidgohel/ggiraph
ghuser: davidgohel
ghrepo: ggiraph
tags: visualization,general
cran: true
ghauthor: davidgohel
short: >
htmlwidget to make 'ggplot' graphics interactive.
description: >
- name: ggmuller
thumbnail: images/ggmuller.png
url: https://cran.r-project.org/web/packages/ggmuller/index.html
ghuser: robjohnnoble
ghrepo: ggmuller
tags: visualization,evolution,dynamics
cran: true
ghauthor: robjohnnoble
short: >
Creates Muller plots for visualizing evolutionary dynamics.
description: >
An attempt to set an easy-to-use standard for representing evolutionary dynamics.
Should prove useful to researchers in experimental evolution, cancer research, population genetics, and beyond.
- name: ggstance
thumbnail: images/ggstance.png
url: https://github.com/lionel-/ggstance
ghuser: lionel-
ghrepo: ggstance
tags: visualization,general
cran: true
ghauthor: lionel-
short: >
ggstance implements horizontal versions of common ggplot2 geoms.
description: >
- name: ggrepel
thumbnail: images/ggrepel.png
url: https://github.com/slowkow/ggrepel
ghuser: slowkow
ghrepo: ggrepel
tags: visualization,general
cran: true
ghauthor: slowkow
short: >
Repel overlapping text labels away from each other.
description: >
- name: ggraph
thumbnail: images/ggraph.png
url: https://github.com/thomasp85/ggraph
ghuser: thomasp85
ghrepo: ggraph
tags: visualization,general
cran: true
ghauthor: thomasp85
short: >
ggraph is tailored at plotting graph-like data structures (graphs, networks, trees, hierarchies...).
description: >
- name: gginnards
thumbnail: images/gginnards.png
url: https://docs.r4photobiology.info/gginnards
ghuser: aphalo
ghrepo: gginnards
tags: visualization,general,layer manipulation,debug
cran: true
ghauthor: aphalo
short: >
Find, delete, insert and move plot layers. Delete unused variables from
the data stored within a ggplot object. Dump data to the R console.
description: >
Package ‘gginnards’ is a set of extensions to R package ‘ggplot2’
(>= 3.0.0). Provides tools making easy to edit and explore ggplot objects.
It also provides stats and geom that can be used to dump the data input
to geoms and stats to the R console or to summarize it using arbitrary
functions and then dumping the summary to the R console.
- name: ggpp
thumbnail: images/ggpp.png
url: https://docs.r4photobiology.info/ggpp
ghuser: aphalo
ghrepo: ggpp
tags: visualization,general
cran: true
ghauthor: aphalo
short: >
Plot annotations, data labels, plot insets, filter labels by local
density (geoms, statistics, positions).
description: >
Package ‘ggpp’ (Grammar Extensions) is a set of extensions to
R package ‘ggplot2’ (>= 3.0.0). Provides `geom_plot()`, `geom_grob()`,
`geom_table()` and `stat_fmt_tb()` for insets. Constructors ggplot.ts()`
and `ggplot.xts()`. Geometries for margin annotations. Selective
annotation of observations in high/low density plot regions and nudging
away from lines or focal points, compatible with `geom_text_repel()` and
`geom_label_repel()` from package ‘ggrepel’.
- name: ggpmisc
thumbnail: images/ggpmisc.png
url: https://docs.r4photobiology.info/ggpmisc
ghuser: aphalo
ghrepo: ggpmisc
tags: visualization,statistics,general
cran: true
ghauthor: aphalo
short: >
Model equation, line, residuals (lm, quantile, MA, rlm, etc.), P, F, AIC,
BIC, n, correlation, ANOVA and summary tables, multiple comparisons,
peaks and valleys, centroid, data labels.
description: >
Package ‘ggpmisc’ (Miscellaneous Extensions to ‘ggplot2’) is a set of
extensions to R package ‘ggplot2’ (>= 3.0.0) with emphasis on annotations
and highlighting related to fitted models and data summaries. scales
suitable for volcano and quadrant plots. Stats for locating peaks and
valleys. See also packages 'gginnards' and 'ggpp' for functions previously
included in 'ggpmisc'.
- name: geomnet
thumbnail: images/geomnet.png
url: https://github.com/sctyner/geomnet
ghuser: sctyner
ghrepo: geomnet
tags: visualization,general
cran: false
ghauthor: sctyner
short: >
geomnet implements network visualizations in ggplot2 via geom_net.
description: >
- name: ggExtra
thumbnail: images/ggExtra.png
url: https://github.com/daattali/ggExtra
ghuser: daattali
ghrepo: ggExtra
tags: histogram,marginal,density
cran: true
ghauthor: daattali
short: >
ggExtra lets you add marginal density plots or histograms to ggplot2 scatterplots.
description: >
- name: ggfortify
thumbnail: images/ggfortify.png
url: https://github.com/sinhrks/ggfortify
ghuser: sinhrks
ghrepo: ggfortify
tags: visualization,general
cran: true
ghauthor: terrytangyuan
short: >
The unified interface to ggplot2 many popular statistical pakackage results.
description: >
Unified plotting tools for statistics commonly used, such as GLM, time series,
PCA families, clustering and survival analysis. The package offers a single
plotting interface for these analysis results and plots in a unified style
using 'ggplot2'.
- name: autoplotly
thumbnail: images/ggfortify.png
url: https://github.com/terrytangyuan/autoplotly
ghuser: terrytangyuan
ghrepo: autoplotly
tags: visualization,general
cran: true
ghauthor: terrytangyuan
short: >
Automatic generation of interactive visualizations for popular statistical results.
description: >
Automatically generate interactive visualizations for popular statistical results
supported by 'ggfortify', such as time series, PCA, clustering and survival analysis,
with 'plotly.js' <https://plot.ly/> and 'ggplot2' style. The generated visualizations
can also be easily extended using 'ggplot2' and 'plotly' syntax while staying interactive.
- name: gganimate
thumbnail: images/gganimate.gif
url: https://gganimate.com
ghuser: thomasp85
ghrepo: gganimate
tags: visualization,general
cran: true
ghauthor: thomasp85
short: >
A Grammar of Animated Graphics.
description: >
The grammar of graphics as implemented in the 'ggplot2' package has
been successful in providing a powerful API for creating static
visualisation. In order to extend the API for animated graphics this package
provides a completely new set of grammar, fully compatible with 'ggplot2'
for specifying transitions and animations in a flexible and extensible way.
- name: ggfx
thumbnail: images/ggfx.png
url: https://ggfx.data-imaginist.com/
ghuser: thomasp85
ghrepo: ggfx
tags: visualization,general
cran: true
ghauthor: thomasp85
short: >
Pixel Filters for 'ggplot2' and 'grid'
description: >
Provides a range of filters that can be applied to layers from the
'ggplot2' package and its extensions, along with other graphic elements such
as guides and theme elements. The filters are applied at render time and
thus uses the exact pixel dimensions needed.
- name: plotROC
thumbnail: images/plotROC.png
url: https://github.com/sachsmc/plotROC
ghuser: sachsmc
ghrepo: plotROC
tags: visualization,general
cran: true
ghauthor: sachsmc
short: >
plotROC provides functions to generate an interactive ROC curve plot
for web use, and print versions.
description: >
- name: ggbump
thumbnail: images/ggbump.png
url: https://github.com/davidsjoberg/ggbump
ghuser: davidsjoberg
ghrepo: ggbump
tags: visualization,general,geoms
cran: true
ghauthor: davidsjoberg
short: >
Bump Chart and Sigmoid Curves.
description: >
A geom for ggplot to create bump plots. Can be good to use for showing
rank over time.
- name: ggthemes
thumbnail: images/ggthemes.png
url: https://github.com/jrnold/ggthemes
ghuser: jrnold
ghrepo: ggthemes
tags: visualization,general,themes
cran: true
ghauthor: jrnold
short: >
Some extra geoms, scales, and themes for ggplot.
description: >
- name: ggspectra
thumbnail: images/ggspectra.png
url: https://docs.r4photobiology.info/ggspectra
ghuser: aphalo
ghrepo: ggspectra
tags: visualization,general
cran: true
ghauthor: aphalo
short: >
Plot light-related spectra, peaks, valleys, half maximum, labels with
summaries and colours from spectral data (autoplot, stats, geoms, scales).
description: >
The goal of ‘ggspectra’ is to make it easy to plot radiation spectra and
similar data, such and transmittance, absorbance and reflectance spectra,
producing fully annotated publication- and presentation-ready plots.
Package ‘ggspectra’ provides stats, geoms, scales and functions to be
used for plotting radiation-related spectra and annotating the plots with
quantities derived from spectral data. All summary quantities implemented
in ‘photobiology’ can be used for annotations including biologically
effective irradiances and exposures.
- name: ggstatsplot
thumbnail: images/ggstatsplot.png
url: https://github.com/IndrajeetPatil/ggstatsplot
ghuser: IndrajeetPatil
ghrepo: ggstatsplot
tags: visualization,statistics
cran: true
ghauthor: IndrajeetPatil
short: >
'ggstatsplot' provides a collection of functions to enhance 'ggplot2'
plots with results from statistical tests.
description: >
Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
- name: ggnetwork
thumbnail: images/ggnetwork.png
url: https://github.com/briatte/ggnetwork
ghuser: briatte
ghrepo: ggnetwork
tags: visualization,general
cran: true
ghauthor: briatte
short: >
The ggnetwork package provides a way to build network plots with ggplot2.
description: >
- name: ggtech
thumbnail: images/ggtech.png
url: https://github.com/ricardo-bion/ggtech
ghuser: ricardo-bion
ghrepo: ggtech
tags: visualization,general,themes
cran: false
ghauthor: ricardo-bion
short: >
ggplot2 tech themes, scales, and geoms.
description: >
- name: ggradar
thumbnail: images/ggradar.png
url: https://github.com/ricardo-bion/ggradar
ghuser: ricardo-bion
ghrepo: ggradar
tags: visualization,general
cran: false
ghauthor: ricardo-bion
short: >
ggradar allows you to build radar charts with ggplot2.
description: >
- name: ggx
thumbnail: images/ggx.png
url: https://github.com/brandmaier/ggx
ghuser: brandmaier
ghrepo: ggx
tags: visualization,nlp
cran: true
ghauthor: brandmaier
short: >
A Natural Language Interface to 'ggplot2'.
description: >
The 'ggplot2' package is the state-of-the-art toolbox for
creating and formatting graphs. However, it is easy to forget
how certain formatting commands are named and sometimes users
find themselves asking: How do you rotate the x-axis labels again?
Or how do you hide the legend...? This package allows users to issue
natural language commands related to theme-related styling of plots
(colors, font size and such), which then are translated into valid
'ggplot2' commands.
- name: ggTimeSeries
thumbnail: images/ggTimeSeries.png
url: https://github.com/Ather-Energy/ggTimeSeries
ghuser: Ather-Energy
ghrepo: ggTimeSeries
tags: visualization,general
cran: true
ghauthor: Ather-Energy
short: >
This R package offers novel time series visualisations.
description: >
- name: ggtree
thumbnail: images/ggtree.png
url: https://guangchuangyu.github.io/ggtree
ghuser: GuangchuangYu
ghrepo: ggtree
tags: visualization,general
cran: false
ghauthor: GuangchuangYu
short: >
gtree is designed for visualizing phylogenetic tree and different types of associated annotation data.
description: >
- name: ggseas
thumbnail: images/ggseas.png
url: https://github.com/ellisp/ggseas
ghuser: ellisp
ghrepo: ggseas
tags: visualization,general
cran: true
ghauthor: ellisp
short: >
Seasonal adjustment on the fly extension for ggplot2.
description: >
- name: ggsci
thumbnail: images/ggsci.png
url: https://nanx.me/ggsci/
ghuser: road2stat
ghrepo: ggsci
tags: visualization,general
cran: true
ghauthor: road2stat
short: >
A collection of ‘ggplot2’ color palettes inspired by scientific journals
and science fiction TV shows.
description: >
- name: ggmosaic
thumbnail: images/ggmosaic.png
url: https://github.com/haleyjeppson/ggmosaic
ghuser: haleyjeppson
ghrepo: ggmosaic
tags: visualization,general
cran: true
ghauthor: haleyjeppson
short: >
ggmosaic implements mosaic plots in ‘ggplot2’ via geom_mosaic.
description: >
- name: survminer
thumbnail: images/survminer.png
url: http://www.sthda.com/english/rpkgs/survminer/
ghuser: kassambara
ghrepo: survminer
tags: visualization,survival
cran: true
ghauthor: kassambara
short: >
Drawing Survival Curves using 'ggplot2'
description: >
Contains the function 'ggsurvplot()' for drawing easily beautiful and
'ready-to-publish' survival curves with the 'number at risk' table.
Other functions are also available for visual examinations of 'cox' model
assumptions.
- name: ggeasy
thumbnail: images/ggeasy.png
url: https://jonocarroll.github.io/ggeasy/
ghuser: jonocarroll
ghrepo: ggeasy
tags: visualization,teaching
cran: true
ghauthor: jonocarroll
short: >
Easy Access to 'ggplot2' Commands
description: >
Provides a series of aliases to commonly used but difficult
to remember 'ggplot2' sequences.
- name: ggside
thumbnail: images/ggside.png
url: https://github.com/jtlandis/ggside
ghuser: jtlandis
ghrepo: ggside
tags: visualization,correlation
cran: true
ghauthor: jtlandis
short: >
Side Grammar Graphics
description: >
The grammar of graphics as shown in 'ggplot2' has provided
an expressive API for users to build plots. 'ggside' extends 'ggplot2'
by allowing users to add graphical information about one of the main panel's
axis using a familiar 'ggplot2' style API with tidy data. This package is
particularly useful for visualizing metadata on a discrete axis, or summary
graphics on a continuous axis such as a boxplot or a density distribution.
- name: ggcorrplot
thumbnail: images/ggcorrplot.png
url: https://rpkgs.datanovia.com/ggcorrplot/
ghuser: kassambara
ghrepo: ggcorrplot
tags: visualization,correlation
cran: true
ghauthor: kassambara
short: >
Visualization of a correlation matrix using 'ggplot2'
description: >
The 'ggcorrplot' package can be used to visualize easily a
correlation matrix using 'ggplot2'. It provides a solution for reordering the
correlation matrix and displays the significance level on the plot. It also
includes a function for computing a matrix of correlation p-values.
- name: ggpubr
thumbnail: images/ggpubr.png
url: https://rpkgs.datanovia.com/ggpubr/
ghuser: kassambara
ghrepo: ggpubr
tags: visualization,statistics
cran: true
ghauthor: kassambara
short: >
‘ggplot2’ Based Publication Ready Plots
description: >
The 'ggplot2' package is excellent and flexible for elegant data
visualization in R. However the default generated plots requires some formatting
before we can send them for publication. Furthermore, to customize a 'ggplot',
the syntax is opaque and this raises the level of difficulty for researchers
with no advanced R programming skills. 'ggpubr' provides some easy-to-use
functions for creating and customizing 'ggplot2'- based publication ready plots.
- name: ggthemr
thumbnail: images/cttobin-ggthemr.png
url: https://github.com/cttobin/ggthemr
ghuser: cttobin
ghrepo: ggthemr
tags: visualization,general,themes
cran: false
ghauthor: cttobin
short: >
Themes for ggplot
description: >
Themes for ggplot. The idea of this package is that you can just set the theme and then forget about it. You should not have to change any of your existing code.
- name: GGally
thumbnail: images/ggally.png
url: https://ggobi.github.io/ggally/
ghuser: ggobi
ghrepo: ggally
tags: visualization,general
cran: true
ghauthor: ggobi
short: >
ggally extends 'ggplot2' by adding several functions to reduce the complexity of combining geometric objects with transformed data.
description: >
ggplot2 is a plotting system based on the grammar of graphics. 'GGally' extends 'ggplot2' by adding several functions to reduce the complexity of combining geometric objects with transformed data. Some of these functions include a pairwise plot matrix, a two group pairwise plot matrix, a parallel coordinates plot, a survival plot, and several functions to plot networks.
- name: ggseqlogo
thumbnail: images/ggseqlogo.png
url: https://github.com/omarwagih/ggseqlogo
ghuser: omarwagih
ghrepo: ggseqlogo
tags: visualization,general
cran: true
ghauthor: omarwagih
short: >
Publication-ready sequence logos using ggplot2.
description: >
ggseqlogo extends 'ggplot2' allowing users to flexibily plot sequence logos.
- name: ggChernoff
thumbnail: images/ggChernoff.png
url: https://github.com/Selbosh/ggChernoff
ghuser: Selbosh
ghrepo: ggChernoff
tags: visualization
cran: true
ghauthor: Selbosh
short: >
Visualise multivariate data using human faces
description: >
Adds geoms, scales and aesthetics to plot 'Chernoff' faces that vary their expression according to your data.
Make your data smile or frown, angry or straight-faced, with continuous scales and legend support.
- name: ggridges
thumbnail: images/ggridges.png
url: https://cran.r-project.org/web/packages/ggridges/vignettes/introduction.html
ghuser: clauswilke
ghrepo: ggridges
tags: visualization,general
cran: true
ghauthor: clauswilke
short: >
Ridgeline plot geoms for 'ggplot2'
description: >
Ridgeline plots provide a convenient way of visualizing changes in distributions over time or space. This package enables the creation of such plots in 'ggplot2'.
- name: lemon
thumbnail: images/lemon.png
url: https://github.com/stefanedwards/lemon
ghuser: stefanedwards
ghrepo: lemon
tags: visualization,brackets,axis
cran: true
ghauthor: stenfanedwards
short: >
Repositioning legends and adding brackets to axes to 'ggplot2'.
description: >
Functions for working with legends and axis lines of 'ggplot2', facets that repeat axis lines on all panels, and some 'knitr' extensions.
- name: cowplot
thumbnail: images/cowplot.png
url: https://cran.r-project.org/web/packages/cowplot/vignettes/introduction.html
ghuser: wilkelab
ghrepo: cowplot
tags: visualization,general,themes
cran: true
ghauthor: clauswilke
short: >
Streamlined plot theme and plot annotations for 'ggplot2'
description: >
The package provides a streamlined and clean theme that is used in the Wilke lab, hence the package name, which stands for Claus O. Wilke's plot package. The package also provide functionality to combine multiple 'ggplot2' plots into one, align them, and label them with letters, e.g. A, B, C, etc., as is often required for scientific publications.
- name: qqplotr
thumbnail: images/qqplotr.png
url: https://github.com/aloy/qqplotr
ghuser: aloy
ghrepo: qqplotr
tags: quantile-quantile,probability-probability
cran: true
ghauthor: almeidaxan
short: >
Quantile-quantile and probability-probability plot extensions for 'ggplot2'
description: >
The package extends some 'ggplot2' functionalities by permitting the drawing of quantile-quantile (Q-Q) and probability-probability (P-P) points, lines, and confidence bands. The functions of this package also allow the detrend adjustment, previously proposed in the literature to help reduce visual bias when assessing those type of plots.
- name: ggalluvial
thumbnail: images/ggalluvial.png
url: https://github.com/corybrunson/ggalluvial
ghuser: corybrunson
ghrepo: ggalluvial
tags: visualization,categorical,time series
cran: true
ghauthor: corybrunson
short: >
A 'ggplot2' extension for alluvial diagrams.
description: >
Alluvial diagrams encompass a variety of charts that use x-splines (alluvia and flows), sometimes augmented with stacked bars (lodes or strata), to visualize incidence structures derived from several data types, including repeated categorical measures, evolving classifications, and multi-dimensional categorical data. This package contains stats and geoms that interpret multiple data formats compatible with this framework while hewing to the principles of tidy data and the grammar of graphics.
- name: patchwork
thumbnail: images/thomasp85-patchwork.png
url: https://github.com/thomasp85/patchwork#patchwork
ghuser: thomasp85
ghrepo: patchwork
tags: visualization,composition
cran: true
ghauthor: thomasp85
short: >
Easy composition of ggplot plots using arithmetic operators
description: >
ggplot2 is concerned with single plots, facets notwithstanding, and does not provide a native way to compose multiple plots. patchwork extends the standard ggplot2 API to allow composition with the '+' operator as well as other the means to customize the layout and nest sub-arrangements.
- name: ggquiver
thumbnail: images/ggquiver.png
url: https://github.com/mitchelloharawild/ggquiver
ghuser: mitchelloharawild
ghrepo: ggquiver
tags: visualization,quiver,velocity,vector
cran: true
ghauthor: mitchelloharawild
short: >
Quiver/velocity plots for 'ggplot2'.
description: >
Quiver plots are common a common visualisation method for vector fields. 'ggquiver' provides a new geom which simplifies the creation of these plots, with scaling and centering functionality.
- name: ggsignif
thumbnail: images/ggsignif.png
url: https://github.com/const-ae/ggsignif
ghuser: const-ae
ghrepo: ggsignif
tags: visualization,multiple comparisons
cran: true
ghauthor: const-ae and IndrajeetPatil
short: >
Significance Brackets for 'ggplot2'.
description: >
Enrich your 'ggplots' with group-wise comparisons.
This package provides an easy way to indicate if two groups are
significantly different. Commonly this is shown by a bracket on top
connecting the groups of interest which itself is annotated with the
level of significance (NS, *, **, ***). The package provides a single
layer (geom_signif()) that takes the groups for comparison and the
test (t.test(), wilcox.text() etc.) as arguments and adds the
annotation to the plot.
- name: ggdag
thumbnail: images/ggdag.png
url: https://ggdag.malco.io/
ghuser: malcolmbarrett
ghrepo: ggdag
tags: visualization,dags,inference
cran: true
ghauthor: malcolmbarrett
short: >
Causal directed acyclic graphs (DAGs) in `ggplot2`
description: >
Tidy, visualize, and analyze causal DAGs. `ggdag` fuses the `dagitty` package, which contains powerful algorithms for analyzing causal diagrams, with the flexibility of `ggplot2` and `ggraph`.
- name: ggformula
thumbnail: images/projectmosaic-ggformula.png
url: https://projectmosaic.github.io/ggformula/
ghuser: ProjectMOSAIC
ghrepo: ggformula
tags: visualization,general,interface
cran: true
ghauthor: rpruim
short: >
`ggplot2` via formulas and pipes
description: >
`ggformula` provides a formula-based interface for `ggplot2` that uses pipes (`%>%`) for layering.
- name: ggbeeswarm
thumbnail: images/ggbeeswarm.png
url: https://github.com/eclarke/ggbeeswarm
ghuser: eclarke
ghrepo: ggbeeswarm
tags: visualization, beeswarm, categorical
cran: true
ghauthor: Erik Clarke and Scott Sherrill-Mix
short: >
Create beeswarm plots, which avoids overlapping datapoints.
description: >
Beeswarm plots (aka column scatter plots or violin scatter plots) are a way of plotting points that would ordinarily overlap so that they fall next to each other instead. In addition to reducing overplotting, it helps visualize the density of the data at each point (similar to a violin plot), while still showing each data point. `ggbeeswarm `provides two different methods to create beeswarm-style plots using ggplot2. `geom_quasirandom()` uses a van der Corput sequence or Tukey texturing o space the dots to avoid overplotting. `geom_beeswarm()` uses the Aron Ecklund's `beeswarm` library to do point-size based offset.
- name: ggperiodic
thumbnail: images/ggperiodic-cos.png
url: https://github.com/eliocamp/ggperiodic
ghuser: eliocamp
ghrepo: ggperiodic
tags: visualization,periodic
cran: true
ghauthor: eliocamp
short: >
Automagically augment periodic data in `ggplot2`
description: >
Allows you to wrap periodic data to any arbitrary domain automatically inside the ggplot2 call.
- name: ggpol
thumbnail: images/erocoar-ggpol.png
url: https://github.com/erocoar/ggpol
ghuser: erocoar
ghrepo: ggpol
tags: visualization,general
cran: true
ghauthor: erocoar
short: >
ggpol adds parliament diagrams and several other geoms to ggplot2.
description: >
- name: ggpirate
thumbnail: images/ggpirate.png
url: https://github.com/mikabr/ggpirate
ghuser: mikabr
ghrepo: ggpirate
tags: visualization
cran: false
ghauthor: mikabr
short: >
Pirate plots for `ggplot2`
description: >
A pirate plot (as seen in Nathaniel Phillips's package `yarrr`) is a way of displaying data where a continuous dependent variable is a function of a categorical independent variable, in a more informative way than the traditional barplot. `ggpirate` creates customizable versions of these plots with a single `ggplot2` `geom`, `geom_pirate`.
- name: esquisse
thumbnail: images/esquisse.png
url: https://github.com/dreamRs/esquisse
ghuser: dreamrs
ghrepo: esquisse
tags: visualization,interface
cran: true
ghauthor: dreamrs
short: >
Explore and Visualize Your Data Interactively with `ggplot2`
description: >
A 'shiny' gadget to create 'ggplot2' charts interactively with drag-and-drop to map your variables. You can quickly visualize your data accordingly to their type, export to 'PNG' or 'PowerPoint', and retrieve the code to reproduce the chart.
- name: ggdark
thumbnail: images/nsgrantham-ggdark.png
url: https://github.com/nsgrantham/ggdark
ghuser: nsgrantham
ghrepo: ggdark
tags: visualization,general,themes
cran: true
ghauthor: nsgrantham
short: >
Dark Mode for `ggplot2` Themes
description: >
Activate dark mode on your favorite `ggplot2` theme with `dark_mode()` or use the dark versions of native `ggplot2` themes, including `dark_theme_gray()`, `dark_theme_minimal()`, and others.
- name: sugrrants
thumbnail: images/sugrrants.png
url: https://pkg.earo.me/sugrrants
ghuser: earowang
ghrepo: sugrrants
tags: visualization,calendar,time-series
cran: true
ghauthor: earowang
short: >
Supporting Graphs for Analysing Temporal Data with `ggplot2`.
description: >
Provides 'ggplot2' graphics for analysing temporal data. It aims to
fit into the 'tidyverse' and grammar of graphics framework for handling
temporal data.
- name: tvthemes
thumbnail: images/ryo-n7-tvthemes.png
url: https://github.com/Ryo-N7/tvthemes
ghuser: Ryo-N7
ghrepo: tvthemes