diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index f530947da294..bfde93b9f94f 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -124,11 +124,12 @@ jobs:
       run: |
         docker run \
           --rm \
+          --quiet \
           -u "$(id -u):$(id -g)" \
           -v "$(pwd):${workspace_name}" \
           --entrypoint python \
           gcr.io/cloud-devrel-public-resources/java-library-generation:"${library_generation_image_tag}" \
-          /src/cli/entry_point.py validate-generation-config
+          /src/library_generation/cli/entry_point.py validate-generation-config
       env:
         library_generation_image_tag: 2.49.0
         workspace_name: /workspace
diff --git a/.github/workflows/generated_files_sync.yaml b/.github/workflows/generated_files_sync.yaml
index bba783f4f130..09df1b3475c0 100644
--- a/.github/workflows/generated_files_sync.yaml
+++ b/.github/workflows/generated_files_sync.yaml
@@ -32,11 +32,12 @@ jobs:
       run: |
         docker run \
           --rm \
+          --quiet \
           -u "$(id -u):$(id -g)" \
           -v "$(pwd):/workspace" \
           --entrypoint python \
           gcr.io/cloud-devrel-public-resources/java-library-generation:"${library_generation_image_tag}" \
-          /src/cli/generate_monorepo_root_pom.py \
+          /src/library_generation/cli/generate_monorepo_root_pom.py \
           generate \
           --repository-path=/workspace
     - name: Fail if there's any difference
@@ -52,11 +53,12 @@ jobs:
       run: |
         docker run \
           --rm \
+          --quiet \
           -u "$(id -u):$(id -g)" \
           -v "$(pwd):/workspace" \
           --entrypoint python \
           gcr.io/cloud-devrel-public-resources/java-library-generation:"${library_generation_image_tag}" \
-          /src/cli/generate_monorepo_gapic_bom.py \
+          /src/library_generation/cli/generate_monorepo_gapic_bom.py \
           generate \
           --repository-path=/workspace \
           --versions-file=/workspace/versions.txt