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FR: Support running the annotations pipeline standalone #504

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mbookman opened this issue Jul 16, 2019 · 0 comments
Open

FR: Support running the annotations pipeline standalone #504

mbookman opened this issue Jul 16, 2019 · 0 comments
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@allieychen

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@mbookman
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It would be great to be able to ----run_annotation_pipeline as a standalone step. Some users might not want to upload to BigQuery or you might want to operationally separate the annotation step from the upload to BigQuery.

Today you can make this happen by causing the load to BigQuery to fail. For example, you can pass a non-existent VCF header, like --representative_header_file DOES_NOT_EXIST.
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@mbookman @allieychen