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NAMESPACE
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# Generated by roxygen2: do not edit by hand
exportPattern("^[[:alpha:]]+")
importFrom(Rcpp, evalCpp)
useDynLib(richR)
S3method("$",Annot)
S3method("$",GSEAResult)
S3method("$",richResult)
S3method("[",Annot)
S3method("[",GSEAResult)
S3method("[",richResult)
S3method(arrange,Annot)
S3method(arrange,GSEAResult)
S3method(arrange,richResult)
S3method(as.data.frame,Annot)
S3method(as.data.frame,GSEAResult)
S3method(as.data.frame,richResult)
S3method(detail,GSEAResult)
S3method(detail,richResult)
S3method(dim,Annot)
S3method(dim,GSEAResult)
S3method(dim,richResult)
S3method(filter,Annot)
S3method(filter,GSEAResult)
S3method(filter,richResult)
S3method(group_by,GSEAResult)
S3method(group_by,richResult)
S3method(head,Annot)
S3method(head,GSEAResult)
S3method(head,richResult)
S3method(mutate,Annot)
S3method(mutate,GSEAResult)
S3method(mutate,richResult)
S3method(names,Annot)
S3method(names,GSEAResult)
S3method(names,richResult)
S3method(rbind,GSEAResult)
S3method(rbind,richResult)
S3method(rename,Annot)
S3method(rename,GSEAResult)
S3method(rename,richResult)
S3method(result,GSEAResult)
S3method(result,richResult)
S3method(row.names,Annot)
S3method(row.names,GSEAResult)
S3method(row.names,richResult)
S3method(select,GSEAResult)
S3method(select,richResult)
S3method(slice,GSEAResult)
S3method(slice,richResult)
S3method(summarise,GSEAResult)
S3method(summarise,richResult)
S3method(summary,GSEAResult)
S3method(summary,richResult)
S3method(tail,Annot)
S3method(tail,GSEAResult)
S3method(tail,richResult)
export("%<>%")
export("%>%")
export(arrange)
export(buildAnnot)
export(buildMSIGDB)
export(buildOwn)
export(compareGSEA)
export(compareResult)
export(comparedot)
export(detail)
export(enrich)
export(enrich_internal)
export(filter)
export(getdetail)
export(ggGSEA)
export(ggbar)
export(ggdot)
export(ggnetmap)
export(ggnetplot)
export(ggnetwork)
export(group_by)
export(idconvert)
export(msigdbinfo)
export(mutate)
export(parGSEA)
export(plotGSEA)
export(rename)
export(result)
export(reverseList)
export(richCluster)
export(richDAVID)
export(richGO)
export(richGSEA)
export(richGSEA_internal)
export(richKEGG)
export(richLevel)
export(select)
export(showData)
export(slice)
export(summarise)
exportClasses(Annot)
exportClasses(GSEAResult)
exportClasses(richResult)
exportMethods(enrich)
exportMethods(ggbar)
exportMethods(ggdot)
exportMethods(ggnetplot)
exportMethods(ggnetwork)
exportMethods(richCluster)
exportMethods(richGO)
exportMethods(richGSEA)
exportMethods(richKEGG)
exportMethods(richLevel)
importFrom(AnnotationDbi,as.list)
importFrom(AnnotationDbi,keys)
importFrom(GGally,ggnet2)
importFrom(KEGGREST,keggLink)
importFrom(KEGGREST,keggList)
importFrom(S4Vectors,bindROWS)
importFrom(cowplot,plot_grid)
importFrom(dplyr,arrange)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(fgsea,fgseaMultilevel)
importFrom(fgsea,plotEnrichment)
importFrom(fgsea,plotGseaTable)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_equal)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colourbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_light)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggrepel,geom_text_repel)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,degree)
importFrom(igraph,delete.edges)
importFrom(igraph,graph.data.frame)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,simplify)
importFrom(igraph,write_graph)
importFrom(intergraph,asNetwork)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(msigdbr,msigdbr)
importFrom(reshape2,melt)
importFrom(rlang,quos)
importFrom(rlang,sym)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(visNetwork,visIgraph)
importFrom(visNetwork,visInteraction)
importFrom(visNetwork,visOptions)
importFrom(visNetwork,visSave)