We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Greetings,
I was trying to load trials via SessionLoader and get the following error (not just for this eid but for most in the BWM):
In [2]: from brainbox.io.one import SessionLoader In [3]: one = ONE() ...: eid = '69c9a415-f7fa-4208-887b-1417c1479b48' ...: sess_loader = SessionLoader(one=one, eid=eid) ...: sess_loader.load_trials() Inconsistent dimensions for object: trials (637,), goCueTrigger_times (637, 2), intervals_bpod (637,), quiescencePeriod (636,), stimOffTrigger_times (636,), stimOff_times (636,), stimOnTrigger_times (636,), goCue_times (636,), response_times (636,), choice (636,), stimOn_times (636,), contrastLeft (636,), contrastRight (636,), probabilityLeft (636,), feedback_times (636,), feedbackType (636,), rewardVolume (636,), firstMovement_times (636, 2), intervals --------------------------------------------------------------------------- ValueError Traceback (most recent call last) Cell In[3], line 4 2 eid = '69c9a415-f7fa-4208-887b-1417c1479b48' 3 sess_loader = SessionLoader(one=one, eid=eid) ----> 4 sess_loader.load_trials() File ~/miniforge3/envs/iblenv/lib/python3.10/site-packages/brainbox/io/one.py:1475, in SessionLoader.load_trials(self, collection) 1472 # itiDuration frequently has a mismatched dimension, and we don't need it, exclude using regex 1473 self.one.wildcards = False 1474 self.trials = self.one.load_object( -> 1475 self.eid, 'trials', collection=collection, attribute=r'(?!itiDuration).*', revision=self.revision or None).to_df() 1476 self.one.wildcards = True 1477 self.data_info.loc[self.data_info['name'] == 'trials', 'is_loaded'] = True File ~/miniforge3/envs/iblenv/lib/python3.10/site-packages/one/alf/io.py:90, in AlfBunch.to_df(self) 88 def to_df(self) -> pd.DataFrame: 89 """Return DataFrame with data keys as columns""" ---> 90 return dataframe(self) File ~/miniforge3/envs/iblenv/lib/python3.10/site-packages/one/alf/io.py:117, in dataframe(adict) 102 """ 103 Converts an Bunch conforming to size conventions into a pandas DataFrame. 104 For 2-D arrays, stops at 10 columns per attribute. (...) 114 A pandas DataFrame of data 115 """ 116 if check_dimensions(adict) != 0: --> 117 raise ValueError('Can only convert to DataFrame objects with consistent size') 118 # easy case where there are only vectors 119 if all([len(adict[k].shape) == 1 for k in adict]): ValueError: Can only convert to DataFrame objects with consistent size
In [5]: ibllib.version Out[5]: '3.2.0'
Any insights are greatly appreciated!
The text was updated successfully, but these errors were encountered:
k1o0
No branches or pull requests
Greetings,
I was trying to load trials via SessionLoader and get the following error (not just for this eid but for most in the BWM):
In [5]: ibllib.version
Out[5]: '3.2.0'
Any insights are greatly appreciated!
The text was updated successfully, but these errors were encountered: