_pkgdown.yml

# Site metadata
url: 'https://interpretamr.github.io/AMRgen'
title: 'AMRgen'

# Template settings
template:
  bootstrap: 5
  bootswatch: cerulean  # Optional: choose a Bootswatch theme
  light-switch: true    # Enable light/dark mode toggle

# Navbar configuration
navbar:
  left:
    - text: 'Get Started'
      href: 'articles/AMRgen.html'
    - text: 'Reference'
      href: 'reference/index.html'
    - text: 'Articles'
      menu:
        - text: 'Introduction'
          href: 'articles/AMRgen.html'
        # Add more articles as needed
  right:
    - text: "Source Code"
      icon: "fab fa-github"
      href: "https://github.com/interpretAMR/AMRgen"

# Reference section grouping
# reference:
#   - title: 'Core Functions'
#     desc: 'Primary functions for resistance interpretation'
#     contents:
#       - function1
#       - function2
#   - title: 'Utilities'
#     desc: 'Helper functions'
#     contents:
#       - function3
#       - function4

# Footer configuration
footer:
  left: 'Free and Open Source (GPL-2), brought by interpretAMR-AMRgen Development Team'
  right: 'Our goal is to develop interpretive standards for AMR genotypes, akin to the interpretive standards developed by EUCAST and CLSI for antimicrobial susceptibility phenotyping.'