NAMESPACE

# Generated by roxygen2: do not edit by hand

export(AdvancedRarefactionPlot)
export(addData)
export(calculate_alpha_diversity)
export(calculate_stats)
export(createMicrobiomeDataObject)
export(getData)
export(performDifferentialExpression)
export(plot_microbiome_heatmap)
export(removeData)
export(runMicrobiomeExplorerApp)
export(updateData)
export(updateSampleInfo)
export(validate16SRNAData)
export(validateMetagenomicData)
export(validateMetatranscriptomicData)
export(validateSampleInfo)
exportClasses(MicrobiomeData)
import(RColorBrewer)
import(edgeR)
import(limma)
import(phyloseq)
import(shinydashboard)
importFrom(ComplexHeatmap,Heatmap)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,results)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,theme_minimal)
importFrom(grDevices,colorRampPalette)
importFrom(methods,"slot<-")
importFrom(methods,new)
importFrom(methods,slot)
importFrom(shiny,runApp)
importFrom(stats,IQR)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,quantile)
importFrom(stats,rmultinom)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(utils,globalVariables)
importFrom(vegan,rarefy)