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<!DOCTYPE html>
<html lang="en"><head>
<script src="index_files/libs/clipboard/clipboard.min.js"></script>
<script src="index_files/libs/quarto-html/tabby.min.js"></script>
<script src="index_files/libs/quarto-html/popper.min.js"></script>
<script src="index_files/libs/quarto-html/tippy.umd.min.js"></script>
<link href="index_files/libs/quarto-html/tippy.css" rel="stylesheet">
<link href="index_files/libs/quarto-html/light-border.css" rel="stylesheet">
<link href="index_files/libs/quarto-html/quarto-html.min.css" rel="stylesheet" data-mode="light">
<link href="index_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<link href="index_files/libs/quarto-contrib/reveal-auto-agenda-0.0.3/reveal-auto-agenda.css" rel="stylesheet">
<link href="index_files/libs/quarto-contrib/fontawesome6-0.1.0/all.css" rel="stylesheet">
<link href="index_files/libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css" rel="stylesheet"><meta charset="utf-8">
<meta name="generator" content="quarto-1.4.543">
<title>Getting started with report writing using Quarto</title>
<meta name="apple-mobile-web-app-capable" content="yes">
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
<link rel="stylesheet" href="index_files/libs/revealjs/dist/reset.css">
<link rel="stylesheet" href="index_files/libs/revealjs/dist/reveal.css">
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
div.column{flex: auto; overflow-x: auto;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
vertical-align: middle;
}
/* CSS for syntax highlighting */
pre > code.sourceCode { white-space: pre; position: relative; }
pre > code.sourceCode > span { line-height: 1.25; }
pre > code.sourceCode > span:empty { height: 1.2em; }
.sourceCode { overflow: visible; }
code.sourceCode > span { color: inherit; text-decoration: inherit; }
div.sourceCode { margin: 1em 0; }
pre.sourceCode { margin: 0; }
@media screen {
div.sourceCode { overflow: auto; }
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
pre.numberSource code > span
{ position: relative; left: -4em; counter-increment: source-line; }
pre.numberSource code > span > a:first-child::before
{ content: counter(source-line);
position: relative; left: -1em; text-align: right; vertical-align: baseline;
border: none; display: inline-block;
-webkit-touch-callout: none; -webkit-user-select: none;
-khtml-user-select: none; -moz-user-select: none;
-ms-user-select: none; user-select: none;
padding: 0 4px; width: 4em;
}
pre.numberSource { margin-left: 3em; padding-left: 4px; }
div.sourceCode
{ color: #cccccc; background-color: #303030; }
@media screen {
pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
}
code span.al { color: #ffcfaf; } /* Alert */
code span.an { color: #7f9f7f; font-weight: bold; } /* Annotation */
code span.at { } /* Attribute */
code span.bn { color: #dca3a3; } /* BaseN */
code span.bu { } /* BuiltIn */
code span.cf { color: #f0dfaf; } /* ControlFlow */
code span.ch { color: #dca3a3; } /* Char */
code span.cn { color: #dca3a3; font-weight: bold; } /* Constant */
code span.co { color: #7f9f7f; } /* Comment */
code span.cv { color: #7f9f7f; font-weight: bold; } /* CommentVar */
code span.do { color: #7f9f7f; } /* Documentation */
code span.dt { color: #dfdfbf; } /* DataType */
code span.dv { color: #dcdccc; } /* DecVal */
code span.er { color: #c3bf9f; } /* Error */
code span.ex { } /* Extension */
code span.fl { color: #c0bed1; } /* Float */
code span.fu { color: #efef8f; } /* Function */
code span.im { } /* Import */
code span.in { color: #7f9f7f; font-weight: bold; } /* Information */
code span.kw { color: #f0dfaf; } /* Keyword */
code span.op { color: #f0efd0; } /* Operator */
code span.ot { color: #efef8f; } /* Other */
code span.pp { color: #ffcfaf; font-weight: bold; } /* Preprocessor */
code span.sc { color: #dca3a3; } /* SpecialChar */
code span.ss { color: #cc9393; } /* SpecialString */
code span.st { color: #cc9393; } /* String */
code span.va { } /* Variable */
code span.vs { color: #cc9393; } /* VerbatimString */
code span.wa { color: #7f9f7f; font-weight: bold; } /* Warning */
</style>
<link rel="stylesheet" href="index_files/libs/revealjs/dist/theme/quarto.css">
<link href="index_files/libs/revealjs/plugin/quarto-line-highlight/line-highlight.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-menu/menu.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-menu/quarto-menu.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/quarto-support/footer.css" rel="stylesheet">
<style type="text/css">
.callout {
margin-top: 1em;
margin-bottom: 1em;
border-radius: .25rem;
}
.callout.callout-style-simple {
padding: 0em 0.5em;
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
display: flex;
}
.callout.callout-style-default {
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
}
.callout .callout-body-container {
flex-grow: 1;
}
.callout.callout-style-simple .callout-body {
font-size: 1rem;
font-weight: 400;
}
.callout.callout-style-default .callout-body {
font-size: 0.9rem;
font-weight: 400;
}
.callout.callout-titled.callout-style-simple .callout-body {
margin-top: 0.2em;
}
.callout:not(.callout-titled) .callout-body {
display: flex;
}
.callout:not(.no-icon).callout-titled.callout-style-simple .callout-content {
padding-left: 1.6em;
}
.callout.callout-titled .callout-header {
padding-top: 0.2em;
margin-bottom: -0.2em;
}
.callout.callout-titled .callout-title p {
margin-top: 0.5em;
margin-bottom: 0.5em;
}
.callout.callout-titled.callout-style-simple .callout-content p {
margin-top: 0;
}
.callout.callout-titled.callout-style-default .callout-content p {
margin-top: 0.7em;
}
.callout.callout-style-simple div.callout-title {
border-bottom: none;
font-size: .9rem;
font-weight: 600;
opacity: 75%;
}
.callout.callout-style-default div.callout-title {
border-bottom: none;
font-weight: 600;
opacity: 85%;
font-size: 0.9rem;
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-default div.callout-content {
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-simple .callout-icon::before {
height: 1rem;
width: 1rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 1rem 1rem;
}
.callout.callout-style-default .callout-icon::before {
height: 0.9rem;
width: 0.9rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 0.9rem 0.9rem;
}
.callout-title {
display: flex
}
.callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
.callout.no-icon::before {
display: none !important;
}
.callout.callout-titled .callout-body > .callout-content > :last-child {
padding-bottom: 0.5rem;
margin-bottom: 0;
}
.callout.callout-titled .callout-icon::before {
margin-top: .5rem;
padding-right: .5rem;
}
.callout:not(.callout-titled) .callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
/* Callout Types */
div.callout-note {
border-left-color: #4582ec !important;
}
div.callout-note .callout-icon::before {
background-image: url('data:image/png;base64,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');
}
div.callout-note.callout-style-default .callout-title {
background-color: #dae6fb
}
div.callout-important {
border-left-color: #d9534f !important;
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</head>
<body class="quarto-light">
<div class="reveal">
<div class="slides">
<section id="title-slide" data-background-color="black" data-background-image="images/title.png" class="quarto-title-block center">
<h1 class="title">Getting started with report writing using Quarto</h1>
<div class="quarto-title-authors">
</div>
</section>
<section id="introduction" class="slide level2">
<h2>Introduction</h2>
<center>
<p><img src="https://pbs.twimg.com/profile_images/1399221981061451781/aJvNk5sS_400x400.jpg" style="border-radius: 50%;" width="250px"></p>
<p><a href="https://github.com/ivelasq"><i class="fa-brands fa-github" aria-label="github"></i> @ivelasq</a></p>
<p><a href="https://twitter.com/ivelasq3"><i class="fa-brands fa-twitter" aria-label="twitter"></i> @ivelasq3</a></p>
<p><a href="https://fosstodon.org/@ivelasq3"><i class="fa-brands fa-mastodon" aria-label="mastodon"></i> @ivelasq3</a></p>
<p><a href="https://ivelasq.rbind.io"><i class="fa-solid fa-link" aria-label="link"></i> ivelasq.rbind.io</a></p>
</center>
</section>
<section>
<section id="overview" class="title-slide slide level1 agenda-slide center">
<h1>Overview</h1>
<div class="agenda">
<ol>
<li><div class="agenda-active">
<p>Overview</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>What is Quarto?</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Getting started with Quarto</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Creating your Quarto report</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Iterating your reports</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Styling your reports</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Rendering other formats</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Thank you!</p>
</div></li>
</ol>
</div>
</section>
<section id="what-we-will-create-today" class="slide level2">
<h2>What we will create today</h2>
<img data-src="images/reports.png" class="r-stretch"><aside class="notes">
<p>Today, we’ll create reports for polling locations in different states in the U.S. We will touch briefly on PDF report generation, iteration, and styling, but will focus mostly on the set up and execution of HTML reports.</p>
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</section>
<section id="data" class="slide level2 smaller">
<h2>Data</h2>
<p>We will be using data from the latest <a href="https://github.com/rfordatascience/tidytuesday">TidyTuesday</a> on polling places in the U.S.</p>
<ul>
<li>The dataset contains information on the election day(s) in the state, polling locations and their addresses, and various other data points</li>
<li>We’ll be using a geocoded dataset thanks to <a href="https://github.com/thedivtagguy/tidytuesday/tree/master/2024/week-03-polling-places/analysis"><span class="citation" data-cites="thedivtagguy">@thedivtagguy</span>’s geocoding analysis</a></li>
</ul>
<img data-src="images/data.png" class="quarto-figure quarto-figure-center r-stretch"><aside class="notes">
<p>We won’t be covering data cleaning in this session. These data are cleaned into tidy format, with rows for each polling location.</p>
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</section>
<section id="session-materials" class="slide level2">
<h2>Session materials</h2>
<div>
<ul>
<li class="fragment">Slides: <a href="https://ivelasq.quarto.pub/getting-started-with-report-writing-using-quarto/" class="uri">https://ivelasq.quarto.pub/getting-started-with-report-writing-using-quarto/</a></li>
<li class="fragment">GitHub repo with instructions: <a href="https://github.com/ivelasq/reports-with-quarto-exercises" class="uri">https://github.com/ivelasq/reports-with-quarto-exercises</a></li>
<li class="fragment">posit.cloud Project: <a href="https://posit.cloud/content/7416825" class="uri">https://posit.cloud/content/7416825</a></li>
</ul>
</div>
</section>
<section id="session-prep" class="slide level2">
<h2>Session prep</h2>
<p>To follow along with the exercises, please be sure that you:</p>
<ul>
<li>Are on RStudio v2023.06 or later and have cloned the exercise repo</li>
<li>Or, have a posit.cloud account and can access the project</li>
</ul>
<aside class="notes">
<p>You have a few options of how to attend this session. On the README file of the GitHub repo for this session is a list of instructions and a link to the exercise repo. One option is that you have a local copy of the exercises already, and when we get to the different sections you can follow along with what I am doing on your own RStudio. Another option is that you sign up for Posit Cloud and go into the project to follow along. It is also linked in the instructions. One benefit of this is that you don’t have to have RStudio installed on your computer and the project is ready, the packages are installed for you, and you can save a copy of your work if you would like. But, please feel free to just watch the session and try things out on your own afterwards. The slides, repositories, and project will stay up so that you can try things out on your own time. One other thing to note is that Quarto has a lot of options for creating content, so I added some reference materials in the exercise repo README so that you can play around with other options other than the ones I show you.</p>
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</section>
<section id="native-base-r-pipe" class="slide level2">
<h2>Native base R pipe <code>|></code></h2>
<ul>
<li>Introduced in R 4.1.0</li>
<li>Similar to the magrittr pipe</li>
</ul>
<div class="sourceCode" id="cb1"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb1-1"><a href=""></a><span class="in">```{r}</span></span>
<span id="cb1-2"><a href=""></a><span class="in">mtcars |></span></span>
<span id="cb1-3"><a href=""></a><span class="in"> ggplot(aes(x = hp, y = mpg)) +</span></span>
<span id="cb1-4"><a href=""></a><span class="in"> geom_point()</span></span>
<span id="cb1-5"><a href=""></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section></section>
<section>
<section id="what-is-quarto" class="title-slide slide level1 agenda-slide center">
<h1>What is Quarto?</h1>
<div class="agenda">
<ol>
<li><div class="agenda-inactive agenda-pre-active">
<p>Overview</p>
</div></li>
<li><div class="agenda-active">
<p>What is Quarto?</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Getting started with Quarto</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Creating your Quarto report</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Iterating your reports</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Styling your reports</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Rendering other formats</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Thank you!</p>
</div></li>
</ol>
</div>
</section>
<section id="what-is-quarto-1" class="slide level2" data-auto-animate="true">
<h2 data-id="quarto-animate-title">What is Quarto?</h2>
<center>
<p>Quarto® is an</p>
<div class="fragment grow semi-fade-out">
<p>open-source</p>
</div>
<div class="fragment grow semi-fade-out">
<p>scientific and technical</p>
</div>
<div class="fragment grow semi-fade-out">
<p>publishing system</p>
</div>
<div class="fragment grow semi-fade-out">
<p>built on Pandoc.</p>
</div>
</center>
<aside class="notes">
<p>Quarto is an open-source scientific and technical publishing system built on Pandoc. Let’s break this down: Open-source: Posit believes that it’s better for everyone if the tools used for research and science are free and open. Free software means more reproducibility, widespread sharing of knowledge and techniques, and elimination of cost barriers. You can also see the source code and contribute, too. Scientific and technical: Scientific and technical means that Quarto has specific things for journal articles or scientific papers, like support for code execution, citations, footnotes, scientific markdown, equations, citations, crossrefs, so many things. We’ll be showing some of these later on. Publishing system: Quarto is a tool for writing dynamic documents that combine code, output, and text. It can embed output from Python, R, Julia, and Observable. Quarto can be rendered to create high-quality articles, reports, presentations, websites, blogs, and books in HTML, PDF, MS Word, ePub, and more formats. Pandoc is the tool working behind the scenes to change Quarto documents to their finalized format. Quarto documents are authored with markdown, which is a plain text format. But Pandoc markdown is very rich and lets you control your document in very specific ways.</p>
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<aside><div>
<p>Available at quarto.org</p>
</div></aside></section>
<section id="what-is-quarto-2" class="slide level2 r-stretch">
<h2>What is Quarto?</h2>
<img data-src="images/quarto.png" class="r-stretch"><aside class="notes">
<p>Quarto sits inside the big and broad literate programming world, which mixes narrative in text form with code for formatted outputs like documents and webpages and more.</p>
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</section>
<section id="quarto-origins" class="slide level2">
<h2>Quarto origins</h2>
<div>
<ul>
<li class="fragment">Open source project sponsored by Posit (formerly RStudio)</li>
<li class="fragment">We’ve had 10 years of experience with knitr/R Markdown</li>
<li class="fragment">But there are a lot of other programming languages…</li>
</ul>
</div>
<div class="fragment">
<p>Can we reimplement R Markdown such that it’s not tied to R?</p>
</div>
</section>
<section id="quarto-goals" class="slide level2">
<h2>Quarto goals</h2>
<div>
<ul>
<li class="fragment">Create computational documents that hold source code for automation and reproducibility</li>
<li class="fragment">Reduce how difficult it is to make a scientific document</li>
<li class="fragment">Enable “single-source publishing” — create Word, PDFs, HTML, etc. from one source</li>
</ul>
</div>
<aside class="notes">
<p>So the goals are to create these dynamic documents that can be reproducible and automated. For single-source publishing, you often need to create all sorts of output, like things that are printed, on the web, on the mobile. The idea is to being able to make publications from one source.</p>
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</section>
<section id="quarto-formats" class="slide level2">
<h2>Quarto formats</h2>
<p>Quarto can create various types of documents, including:</p>
<div>
<ul>
<li class="fragment">Websites</li>
<li class="fragment">Books</li>
<li class="fragment">Blogs</li>
<li class="fragment">Presentations</li>
<li class="fragment">and, of course, reports!</li>
</ul>
</div>
<aside class="notes">
<p>Quarto can make very flexible websites, or books which are a a Quarto website that can be rendered to Word, ePub, etc., blogs with listings and posts and RSS feeds, Quarto has deep feature set for presentations with reveal.js optimized for scientific content, and of course, publishing for journals. There is custom format systems and the ability to flexibly adapt LaTeX templates.</p>
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</section>
<section id="why-quarto" class="slide level2">
<h2>Why Quarto?</h2>
<ul>
<li><strong>Automation</strong>: Update your report and/or code output</li>
<li><strong>Reproducibility</strong>: Document your process and make it easy to reproduce and replicate your work</li>
<li><strong>Flexibility</strong>: Add multiple data sources, create figures, tables, diagrams, etc.</li>
<li><strong>Single-source publishing</strong>: Ability to create HTML, PDF, Word versions from a single source</li>
</ul>
<aside class="notes">
<p>Shirley Han has a great YouTube video from the R NYC Conference on Quarto reports. She mentions that if you are writing a report repeatedly, so not just one time, where the structure stays the same but the data or numbers or figures change, then Quarto may be for you. Also, if you are already using a Quarto-supported language for data cleaning, creating graphs, etc., then it might be a good fit.</p>
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</section>
<section id="why-quarto-over-r-markdown" class="slide level2">
<h2>Why Quarto over R Markdown?</h2>
<p>Ultimately, it’s up to you!</p>
<ul>
<li>R Markdown will continue to be maintained, but Quarto will receive large future updates</li>
<li>If you use Python or Julia, you can use the same tool without depending on R. And other engines can be added in the future!</li>
<li>Quarto provides a unified ecosystem with shared expression for core features</li>
<li>Quarto also has extensions for customizing your documents</li>
</ul>
<aside class="notes">
<p>R Markdown is a file format for making dynamic documents with R. However, you need to call it from R to use it, and it was depedentn on knitr. If you’re a Python user, it means you need to install R to use R Markdown. Quarto is a tool that you can call from the terminal or command line, and is independent from the computational systems. Quarto supports knitr, and can support others. So, you can think of Quarto as the next generation R Markdown that is fundamentally multilanguage and multiengine. Quarto has a shared expression for core features. If you used the packages from the R Markdown ecosystem, then you may have had to switch between different ways of doing the same thing. In Quarto, you have a shared core syntax that is the same across all formats. Things like tabset, code folding, cross references in the same way. Another example is that Quarto has a universal theming system based on SCSS for all HTML output where core variables defined by bslib and so it is compatible with Shiny, flexdashboard, and R Markdown themes. So, users can create very consistent and organized theming across content.</p>
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</section></section>
<section>
<section id="getting-started-with-quarto" class="title-slide slide level1 agenda-slide center">
<h1>Getting started with Quarto</h1>
<div class="agenda">
<ol>
<li><div class="agenda-inactive agenda-pre-active">
<p>Overview</p>
</div></li>
<li><div class="agenda-inactive agenda-pre-active">
<p>What is Quarto?</p>
</div></li>
<li><div class="agenda-active">
<p>Getting started with Quarto</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Creating your Quarto report</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Iterating your reports</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Styling your reports</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Rendering other formats</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Thank you!</p>
</div></li>
</ol>
</div>
</section>
<section id="installing-rstudio" class="slide level2">
<h2>Installing RStudio</h2>
<p>You can use Quarto in RStudio, VS Code, Jupyter, Neovim, and other text editors.</p>
<p>Today, we will use RStudio, which comes bundled with Quarto.</p>
<img data-src="images/rstudio.png" class="quarto-figure quarto-figure-center r-stretch"></section>
<section id="creating-a-new-quarto-document" class="slide level2 smaller">
<h2>Creating a new Quarto document</h2>
<p>Create a new Quarto document by going to File > New File > Quarto Document.</p>
<ul>
<li>Notice the <code>.qmd</code> extension of the Quarto document</li>
</ul>
<img data-src="images/open-doc.png" class="quarto-figure quarto-figure-center r-stretch"></section>
<section id="creating-a-new-quarto-document-1" class="slide level2">
<h2>Creating a new Quarto document</h2>
<p>This is what the default Quarto document looks like:</p>
<img data-src="images/new-doc.png" class="quarto-figure quarto-figure-center r-stretch"></section>
<section id="yaml-header" class="slide level2">
<h2>YAML header</h2>
<ul>
<li>Metadata of your document</li>
<li>Demarcated by three dashes (—) on either end</li>
<li>Uses key-value pairs in the format <code>key: value</code></li>
</ul>
<img data-src="images/yaml-original.png" class="quarto-figure quarto-figure-center r-stretch"><aside class="notes">
<p>Quarto documents usually start with an (optional) YAML header demarcated by three dashes on either end. The basic syntax of YAML uses key-value pairs in the format key: value. It controls the output of the document and contain metadata for your document. YAML fields commonly found in headers of documents include metadata like author, subtitle, date as well as customization options like theme, fontcolor, fig-width, etc.</p>
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</section>
<section id="yaml-intelligence" class="slide level2">
<h2>YAML intelligence</h2>
<ul>
<li>YAML intelligence is available for project files, YAML front matter, and executable cell options</li>
</ul>
<img data-src="images/yaml-auto.png" class="quarto-figure quarto-figure-center r-stretch"><aside class="notes">
<p>Quarto has YAML intelligence in RStudio and VS code. YAML intelligence means completion and diagnostics for errors, and its’ available for project files, YAML front matter, and executable cell options. This makes it easy to write YAML and see what has gone wrong rather than getting error messages that are really hard to decipher.</p>
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</section>
<section id="markdown-text" class="slide level2">
<h2>Markdown text</h2>
<ul>
<li>Markdown is a lightweight language for creating formatted text</li>
<li>Quarto is based on Pandoc and uses its variation of markdown as its underlying document syntax</li>
</ul>
<img data-src="images/markdown-text.png" class="quarto-figure quarto-figure-center r-stretch"><aside class="notes">
<p>Markdown is a lightweight markup language for creating formatted text using a plain-text editor. Quarto uses markdown syntax for text.</p>
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</section>
<section id="executable-code" class="slide level2 smaller">
<h2>Executable code</h2>
<ul>
<li>Code chunks begin and end with three backticks (usually)</li>
<li>Code chunks are identified with a programming language in between <code>{}</code></li>
<li>Can include optional chunk options, in YAML style, identified by <code>#|</code> at the beginning of the line</li>
</ul>
<img data-src="images/executable-code.png" class="quarto-figure quarto-figure-center r-stretch"><aside class="notes">
<p>Code chunks are identified with three backticks, the language in curly brackets, and can have optional chunk options identified by the hashpipe at the beginning of the line within the chunk. In addition to rendering the complete document to view the results of code chunks you can also run each code chunk interactively in the RStudio editor by clicking the icon or keyboard shortcut (⇧⌘⏎). RStudio executes the code and displays the results either inline within your file or in the Console, depending on your preference.</p>
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</section>
<section id="two-editors-source-and-visual" class="slide level2">
<h2>Two editors: source and visual</h2>
<ul>
<li>RStudio includes a visual editor for Quarto markdown, including support for tables, citations, cross-references, footnotes, and more:</li>
</ul>
<img data-src="images/editors.png" class="quarto-figure quarto-figure-center r-stretch"><aside class="notes">
<p>RStudio has two options for editing documents: visual (on the left) and source (on the right). RStudio’s visual editor offers an WYSIWYM authoring experience for markdown. So formatting (e.g. bolding text) you can use the toolbar, a keyboard shortcut (⌘B), or the markdown construct (<strong>bold</strong>). The plain text source code underlying the document is written for you and you can view/edit it at any point by switching to source mode for editing. You can toggle back and forth these two modes by clicking on Source and Visual in the editor toolbar (or using the keyboard shortcut ⌘⇧ F4).</p>
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</section>
<section id="creating-a-new-quarto-document-2" class="slide level2">
<h2>Creating a new Quarto document</h2>
<p>Use the <strong>Render</strong> button to preview documents as you edit them.</p>
<ul>
<li>Check off <strong>Render on Save</strong> to automatically render whenever you save</li>
</ul>
<img data-src="images/render.png" class="quarto-figure quarto-figure-center r-stretch"><aside class="notes">
<p>In RStudio, you can use the Render button to render the file, or take it through that process of convering to markdown, pandoc processing, etc. and preview the output with a single click. If you’re familiar with R Markdown, it is where the knit button would show for those document. If you prefer to automatically render whenever you save, you can check the Render on Save option on the editor toolbar. The preview will update whenever you re-render the document. Side-by-side preview works for both HTML and PDF outputs.</p>
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</section>
<section id="lets-see-it-in-rstudio" class="slide level2" data-background-color="#F5F1E3" data-background-image="images/section.png">
<h2>Let’s see it in RStudio!</h2>
</section></section>
<section>
<section id="creating-your-quarto-report" class="title-slide slide level1 agenda-slide center">
<h1>Creating your Quarto report</h1>
<div class="agenda">
<ol>
<li><div class="agenda-inactive agenda-pre-active">
<p>Overview</p>
</div></li>
<li><div class="agenda-inactive agenda-pre-active">
<p>What is Quarto?</p>
</div></li>
<li><div class="agenda-inactive agenda-pre-active">
<p>Getting started with Quarto</p>
</div></li>
<li><div class="agenda-active">
<p>Creating your Quarto report</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Iterating your reports</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Styling your reports</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Rendering other formats</p>
</div></li>
<li><div class="agenda-inactive agenda-post-active">
<p>Thank you!</p>
</div></li>
</ol>
</div>
</section>
<section id="edit-the-yaml-header" class="slide level2 smaller">
<h2>Edit the YAML header</h2>
<ul>
<li>Include metadata such as author, subtitle, date as well as customization options like theme, font color, fig-width, etc.</li>
<li>Here, we edit the title, author, and publishing date</li>
<li><code>embed-resources: true</code> is very imporant to create self-contained HTML files</li>
<li>We can add global chunk options with <code>execute</code></li>
</ul>
<div class="sourceCode" id="cb2" data-code-line-numbers="|2-4|5-7|8-11"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb2-1"><a href=""></a><span class="pp">---</span></span>
<span id="cb2-2"><a href=""></a><span class="fu">title</span><span class="kw">:</span><span class="at"> </span><span class="st">"Polling Places Report - Alabama"</span></span>
<span id="cb2-3"><a href=""></a><span class="fu">author</span><span class="kw">:</span><span class="at"> </span><span class="st">"Isabella Velásquez"</span></span>
<span id="cb2-4"><a href=""></a><span class="fu">date</span><span class="kw">:</span><span class="at"> today</span></span>
<span id="cb2-5"><a href=""></a><span class="fu">format</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb2-6"><a href=""></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb2-7"><a href=""></a><span class="at"> </span><span class="fu">embed-resources</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span>
<span id="cb2-8"><a href=""></a><span class="fu">execute</span><span class="kw">:</span></span>
<span id="cb2-9"><a href=""></a><span class="at"> </span><span class="fu">echo</span><span class="kw">:</span><span class="at"> </span><span class="ch">false</span></span>
<span id="cb2-10"><a href=""></a><span class="at"> </span><span class="fu">message</span><span class="kw">:</span><span class="at"> </span><span class="ch">false</span></span>
<span id="cb2-11"><a href=""></a><span class="at"> </span><span class="fu">warning</span><span class="kw">:</span><span class="at"> </span><span class="ch">false</span></span>
<span id="cb2-12"><a href=""></a><span class="pp">---</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<aside class="notes">
<p><code>embed-resources: true</code> produces a standalone HTML file with no external dependencies, using data: URIs to incorporate the contents of linked scripts, stylesheets, images, and videos. The resulting file should be “self-contained,” in the sense that it needs no external files and no net access to be displayed properly by a browser.</p>
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height: 1px!important;
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overflow: hidden!important;
display:block!important;
}</style></aside>
</section>
<section id="add-a-setup-chunk" class="slide level2">
<h2>Add a setup chunk</h2>
<ul>
<li>We can add chunk options on a per code-block basis by using <code>#|</code></li>
<li>In this setup chunk, load all the packages and the dataset</li>
</ul>
<div class="sourceCode" id="cb3" data-code-line-numbers="|1,13|2|3-11|12"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb3-1"><a href=""></a><span class="in">```{r}</span></span>
<span id="cb3-2"><a href=""></a><span class="in">#| label: setup</span></span>
<span id="cb3-3"><a href=""></a><span class="in">library(readr)</span></span>
<span id="cb3-4"><a href=""></a><span class="in">library(dplyr)</span></span>
<span id="cb3-5"><a href=""></a><span class="in">library(tidyr)</span></span>
<span id="cb3-6"><a href=""></a><span class="in">library(tidycensus)</span></span>
<span id="cb3-7"><a href=""></a><span class="in">library(tigris)</span></span>
<span id="cb3-8"><a href=""></a><span class="in">library(sf)</span></span>
<span id="cb3-9"><a href=""></a><span class="in">library(ggplot2)</span></span>
<span id="cb3-10"><a href=""></a><span class="in">library(purrr)</span></span>
<span id="cb3-11"><a href=""></a><span class="in">library(kableExtra)</span></span>
<span id="cb3-12"><a href=""></a><span class="in">polling_places <- read_csv(here::here("data", "geocoded_polling_places.csv"))</span></span>
<span id="cb3-13"><a href=""></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section>
<section id="create-a-rough-draft" class="slide level2 scrollable">
<h2>Create a rough draft</h2>
<p>Next, we can create a rough draft of the report by adding:</p>
<div class="columns">
<div class="column" style="width:50%;">
<ul>
<li>Text and text formatting</li>
<li>Headings</li>
<li>Lists</li>
<li>Figures</li>
<li>Tables</li>
<li>Columns</li>
<li>Cross-references</li>
<li>Captions</li>
</ul>
</div><div class="column" style="width:50%;">
<p><img data-src="images/template.png"></p>
</div>
</div>
</section>
<section id="add-figure-with-captions-and-labels" class="slide level2 smaller">