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setup.py
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from setuptools import setup, find_packages
from sys import version_info
short_description = "HGVS Parser, Formatter, Mapper, Validator"
with open("docs/description.txt") as f:
long_description = f.read()
setup(license="Apache License 2.0 (http://www.apache.org/licenses/LICENSE-2.0)",
long_description=long_description,
use_scm_version=True,
zip_safe=True,
author="HGVS Contributors",
author_email = '[email protected]',
description = short_description.replace("\n", " "),
name="hgvs",
package_data={"hgvs": ["_data/*"]},
packages=find_packages(),
url="https://github.com/biocommons/hgvs",
entry_points={
'console_scripts': [
'hgvs-shell = hgvs.shell:shell'
],
},
classifiers=[
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Developers",
"Intended Audience :: Healthcare Industry",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3",
"Programming Language :: Python",
"Topic :: Database :: Front-Ends",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Medical Science Apps.",
],
keywords=[
"bioinformatics",
"computational biology",
"genome variants",
"genome variation",
"genomic variants",
"genomic variation",
"genomics",
"hgvs",
],
install_requires=[
"attrs>=17.4.0", # https://github.com/biocommons/hgvs/issues/473
"biocommons.seqrepo>=0.6.5",
"bioutils>=0.4.0,<1.0",
"configparser>=3.3.0",
"ipython",
"parsley",
"psycopg2",
"six",
],
setup_requires=[
"cython", # required for RTD build :-)
"pytest-runner",
"setuptools_scm",
"wheel",
],
tests_require=[
"pytest>=5.3",
"pytest-cov>=2.8",
],
)
# <LICENSE>
# Copyright 2021 HGVS Contributors (https://github.com/biocommons/hgvs)
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# </LICENSE>