Release Notes

denovolyzeR 0.2.0

Fixed a critical bug, whereby denovolyzeByGenes() returned incorrect output if user overrode default variant classes analysed (using includeClasses argument; column labels did not match data content)
Updated underlying dependency from reshape to reshape2
Changed output format so that all data is returned in columns. Previously either "gene" or "class" was returned as rownames of the output data structure.

denovolyzeR 0.1.1

Correct minor errors in vignette
Provide citation
Address compatibility with updated dplyr 0.5.0

denovolyzeR 0.1.0

This is the first release of denovolyzeR to CRAN

pre-release builds (0.0.0.9xxx)

2015-04-01: v0.0.0.9003
new functionality includes analysis of sub-types of missense variation
argument names and output formats are about to change: this development release serves to preserce a working version of the package using first draft argument names
2014-11-11: v0.0.0.9000 core statistical functionality is complete and ready for beta-testing
main limitation is a lack of error-catching
there may also be very minor modifications to underlying probability tables