diff --git a/sql/core/src/main/scala/org/apache/spark/sql/parquet/newParquet.scala b/sql/core/src/main/scala/org/apache/spark/sql/parquet/newParquet.scala
index f684ddaf7fc92..a95ad751410d4 100644
--- a/sql/core/src/main/scala/org/apache/spark/sql/parquet/newParquet.scala
+++ b/sql/core/src/main/scala/org/apache/spark/sql/parquet/newParquet.scala
@@ -175,8 +175,8 @@ private[sql] class ParquetRelation2(
   override def dataSchema: StructType = metadataCache.dataSchema
 
   override private[sql] def refresh(): Unit = {
-    metadataCache.refresh()
     super.refresh()
+    metadataCache.refresh()
   }
 
   // Parquet data source always uses Catalyst internal representations.
@@ -346,24 +346,11 @@ private[sql] class ParquetRelation2(
      * Refreshes `FileStatus`es, footers, partition spec, and table schema.
      */
     def refresh(): Unit = {
-      // Support either reading a collection of raw Parquet part-files, or a collection of folders
-      // containing Parquet files (e.g. partitioned Parquet table).
-      val baseStatuses = paths.distinct.flatMap { p =>
-        val path = new Path(p)
-        val fs = path.getFileSystem(sqlContext.sparkContext.hadoopConfiguration)
-        val qualified = path.makeQualified(fs.getUri, fs.getWorkingDirectory)
-        Try(fs.getFileStatus(qualified)).toOption
-      }
-      assert(baseStatuses.forall(!_.isDir) || baseStatuses.forall(_.isDir))
-
       // Lists `FileStatus`es of all leaf nodes (files) under all base directories.
-      val leaves = baseStatuses.flatMap { f =>
-        val fs = FileSystem.get(f.getPath.toUri, SparkHadoopUtil.get.conf)
-        SparkHadoopUtil.get.listLeafStatuses(fs, f.getPath).filter { f =>
-          isSummaryFile(f.getPath) ||
-            !(f.getPath.getName.startsWith("_") || f.getPath.getName.startsWith("."))
-        }
-      }
+      val leaves = cachedLeafStatuses().filter { f =>
+        isSummaryFile(f.getPath) ||
+          !(f.getPath.getName.startsWith("_") || f.getPath.getName.startsWith("."))
+      }.toArray
 
       dataStatuses = leaves.filterNot(f => isSummaryFile(f.getPath))
       metadataStatuses = leaves.filter(_.getPath.getName == ParquetFileWriter.PARQUET_METADATA_FILE)
diff --git a/sql/core/src/main/scala/org/apache/spark/sql/sources/interfaces.scala b/sql/core/src/main/scala/org/apache/spark/sql/sources/interfaces.scala
index 894579abf1991..655d2da7ac3c0 100644
--- a/sql/core/src/main/scala/org/apache/spark/sql/sources/interfaces.scala
+++ b/sql/core/src/main/scala/org/apache/spark/sql/sources/interfaces.scala
@@ -18,6 +18,7 @@
 package org.apache.spark.sql.sources
 
 import scala.collection.mutable
+import scala.util.Try
 
 import org.apache.hadoop.conf.Configuration
 import org.apache.hadoop.fs.{FileStatus, FileSystem, Path}
@@ -382,14 +383,13 @@ abstract class HadoopFsRelation private[sql](maybePartitionSpec: Option[Partitio
       leafDirs.clear()
       leafFiles.clear()
 
+      // We don't filter files/directories like _temporary/_SUCCESS here, as specific data sources
+      // may take advantages over them (e.g. Parquet _metadata and _common_metadata files).
       val statuses = paths.flatMap { path =>
         val hdfsPath = new Path(path)
         val fs = hdfsPath.getFileSystem(hadoopConf)
         val qualified = hdfsPath.makeQualified(fs.getUri, fs.getWorkingDirectory)
-        listLeafFilesAndDirs(fs, fs.getFileStatus(qualified)).filterNot { status =>
-          val name = status.getPath.getName
-          !status.isDir && (name.startsWith("_") || name.startsWith("."))
-        }
+        Try(fs.getFileStatus(qualified)).toOption.toArray.flatMap(listLeafFilesAndDirs(fs, _))
       }
 
       val (dirs, files) = statuses.partition(_.isDir)
@@ -404,6 +404,10 @@ abstract class HadoopFsRelation private[sql](maybePartitionSpec: Option[Partitio
     cache
   }
 
+  protected def cachedLeafStatuses(): Set[FileStatus] = {
+    fileStatusCache.leafFiles.values.toSet
+  }
+
   final private[sql] def partitionSpec: PartitionSpec = {
     if (_partitionSpec == null) {
       _partitionSpec = maybePartitionSpec
@@ -481,7 +485,9 @@ abstract class HadoopFsRelation private[sql](maybePartitionSpec: Option[Partitio
     val inputStatuses = inputPaths.flatMap { input =>
       fileStatusCache.leafFiles.values.filter { status =>
         val path = new Path(input)
-        status.getPath.getParent == path || status.getPath == path
+        (status.getPath.getParent == path || status.getPath == path) &&
+          !status.getPath.getName.startsWith("_") &&
+          !status.getPath.getName.startsWith(".")
       }
     }
     buildScan(requiredColumns, filters, inputStatuses)