diff --git a/scripts/cleanE2e.js b/scripts/cleanE2e.js
index 362a88ae1ebc..37fb475663b1 100644
--- a/scripts/cleanE2e.js
+++ b/scripts/cleanE2e.js
@@ -13,8 +13,11 @@ const {sync: rimraf} = require('rimraf');
 
 const excludedModules = [
   'e2e/global-setup-node-modules/node_modules/',
+  'e2e/presets/cjs/node_modules/',
   'e2e/presets/js/node_modules/',
+  'e2e/presets/js-type-module/node_modules/',
   'e2e/presets/json/node_modules/',
+  'e2e/presets/mjs/node_modules/',
 ].map(dir => normalize(dir));
 
 const e2eNodeModules = glob('e2e/*/node_modules/')