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Biom file from pandas dataframes of metadata #33

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kpitz opened this issue Dec 13, 2019 · 0 comments
Open

Biom file from pandas dataframes of metadata #33

kpitz opened this issue Dec 13, 2019 · 0 comments

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@kpitz
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kpitz commented Dec 13, 2019

Hello,

I haven't been able to figure out how to create a biom table object from three separate pandas dataframes consisting of my otu table, taxa table, and sample metadata. It seems like I can only add one column of metadata at a time when creating a biom table object within python.

Is there a tutorial available for how to quickly go from these common file types to a biom table object and to exporting a biom file?

Thank you!

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