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Not being able to install biom #35

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ThiagoRBM opened this issue Jun 26, 2020 · 2 comments
Open

Not being able to install biom #35

ThiagoRBM opened this issue Jun 26, 2020 · 2 comments

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@ThiagoRBM
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Dear Joey,

Until yesterday, Tax4Fun was running ok in my R (v. 5.1). I had to install dada2... and now Tax4Fun doesn't work anymore. My R started complainig that I don't have the biom package. But I can't install it, even using devtools. I get the following error: Error in parse_repo_spec(repo) : Invalid git repo specification: 'biom'

What can I do to solve this?

Thanks,
Thiago

@ThiagoRBM ThiagoRBM changed the title Not being able to install bioma Not being able to install biom Jun 27, 2020
@MaryoHg
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MaryoHg commented Nov 19, 2020

@ThiagoRBM

Maybe you already solve your problem but here's a solution (@cfsancas):

I installed it with: install_github("joey711/biom")

I found it here: https://github.com/joey711/biom/issues/30

It worked smoothly when R told me: "Error in parse_repo_spec(repo) : Invalid git repo specification: 'biom'" and "package ‘biom’ is not available (for R version 3.6.3)"

@bioinfogini
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Did not worked for me in April 22, neither install_github("joey711/biom") nor devtools::install_github("joey711/biom")

Reports Downloading GitHub repo joey711/biom@HEAD
Error in utils::download.file(url, path, method = method, quiet = quiet, :
cannot open URL 'https://api.github.com/repos/joey711/biom/tarball/HEAD'

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3 participants