Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

package ‘biom’ was installed before R 4.0.0: please re-install it #37

Open
xtwu98 opened this issue Dec 21, 2022 · 1 comment
Open

Comments

@xtwu98
Copy link

xtwu98 commented Dec 21, 2022

The package 'biom' has been installed by
devtools::install_github("joey711/biom")
and can be successfully load by library(biom)
when i run the bugbase
run.bugbase.r -i $BUGBASE_PATH/doc/data/HMP_s15.txt -m $BUGBASE_PATH/doc/data/HMP_map.txt -c HMPBODYSUBSITE -o output
the error comes out
error: package or namespace load failed for ‘biom’: package ‘biom’ was installed before R 4.0.0: please re-install it.

how to fix this problem?
my bioconductor version 3.14 (BiocManager 1.30.19),R 4.1.2 (2021-11-01), biom 0.4.0

@dzw893246344
Copy link

The package 'biom' has been installed by devtools::install_github("joey711/biom") and can be successfully load by library(biom) when i run the bugbase run.bugbase.r -i $BUGBASE_PATH/doc/data/HMP_s15.txt -m $BUGBASE_PATH/doc/data/HMP_map.txt -c HMPBODYSUBSITE -o output the error comes out error: package or namespace load failed for ‘biom’: package ‘biom’ was installed before R 4.0.0: please re-install it.

how to fix this problem? my bioconductor version 3.14 (BiocManager 1.30.19),R 4.1.2 (2021-11-01), biom 0.4.0
Change "# library(biom)" to "library(biom)" in line 45 of the file run.bugbase.r

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants