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Purpose:
To make code that was previously only in HNN GUI dual-purpose and serve for the analysis of simulations run by hnn-core from the command-line.
Rationale:
Since HNN GUI will import hnn-core already for hnn_core.simulator to run the NEURON solver, this will be a better home for the analysis functions. These functions will benefit from documentation and unit testing as part of hnn-core
It's not clear whether optimization code should go entirely in analysis, or the wrapper that runs code in hnn_core.simulator should also go in hnn_core.simulator.
Purpose:
To make code that was previously only in HNN GUI dual-purpose and serve for the analysis of simulations run by
hnn-core
from the command-line.Rationale:
Since HNN GUI will import
hnn-core
already forhnn_core.simulator
to run the NEURON solver, this will be a better home for the analysis functions. These functions will benefit from documentation and unit testing as part ofhnn-core
Proposed components:
hnn_core.simulator
(WIP: Add ability to record LFP's #150)In addition to moving the code, the following improvments will be made:
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