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SimpleITK update causes z-axis orientation bug for some scans #4

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jpeoples opened this issue Nov 22, 2024 · 0 comments
Open

SimpleITK update causes z-axis orientation bug for some scans #4

jpeoples opened this issue Nov 22, 2024 · 0 comments

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@jpeoples
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There is a bug in SimpleITK that makes some of our data load upside down - in particular between

2.2 and 2.4 versions, there is a switch

(more info on fixing this in slicer here) Slicer/Slicer#7987

Essentially something to do with negative "SpacingBetweenSlices" values, which Aim2 has a lot of!

I found this while working on the GE noise map code. I'm "fixing" by using SimpleITK 2.2.1 for now, but will need to properly fix this at some point probably!

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