From 3df96102118696f6dc54c651860d09f19b6baafd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Josu=C3=A9=20Rodr=C3=ADguez-Ramos?= Date: Fri, 16 Dec 2022 15:12:32 -0700 Subject: [PATCH] Update viral_tutorial.md --- viral_tutorial.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/viral_tutorial.md b/viral_tutorial.md index 2f38086..af89e5f 100644 --- a/viral_tutorial.md +++ b/viral_tutorial.md @@ -279,7 +279,7 @@ Each row in the output file lists each spacer (column 1) that has hit to a virus Once you have filtered the BLAST output, you now have a list of host spacers that link to a virus, and thus host-virus linkages! ### Option 2: VirHostMatcher -[VirHostMatcher]((https://academic.oup.com/nar/article/45/1/39/2605663) uses oligonucleotide frequency between a viral and host genome to determine if they infect each other. +[VirHostMatcher](https://academic.oup.com/nar/article/45/1/39/2605663) uses oligonucleotide frequency between a viral and host genome to determine if they infect each other. To run VirHostMatcher, you create three different directories. One of them will contain all the viral genomes (i.e., “virus), one will contain all the bacterial / archaeal genomes (i.e., “host”), and the last will be an empty folder titled “output”. Note: For viral and host genomes, they need to be in a single .fasta file for each. So if you have 125 genomes, you will have 125 fasta files one with each genome.