diff --git a/DESCRIPTION b/DESCRIPTION
index c6ac75a..6aaf55c 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: GENESPACE
 Type: Package
 Title: Synteny- and orthology-constrained comparative genomics
-Version: 1.2.2
+Version: 1.2.3
 Author: John T. Lovell
 Maintainer: John T. Lovell <jlovell@hudsonalpha.org>
 Description: Construct pan-gene sets and other comparative genomics
diff --git a/NAMESPACE b/NAMESPACE
index 7889ee8..a3a8c1b 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -65,6 +65,7 @@ export(phase_blks)
 export(plot_contigs)
 export(plot_hits)
 export(plot_riparian)
+export(pull_pairwise)
 export(pull_seqInfo)
 export(query_cnv)
 export(query_hits)
diff --git a/man/run_genespace.Rd b/man/run_genespace.Rd
index 5ea0afb..429455f 100644
--- a/man/run_genespace.Rd
+++ b/man/run_genespace.Rd
@@ -9,7 +9,8 @@ run_genespace(
   overwrite = FALSE,
   overwriteBed = overwrite,
   overwriteSynHits = overwrite,
-  overwriteInBlkOF = TRUE
+  overwriteInBlkOF = TRUE,
+  makePairwiseFiles = FALSE
 )
 }
 \arguments{
@@ -25,6 +26,9 @@ overwritten?}
 overwritten?}
 
 \item{overwriteInBlkOF}{logical, should in-block orthogroups be overwritten?}
+
+\item{makePairwiseFiles}{logical, should pairwise hits in blocks files be
+generated?}
 }
 \value{
 a gsParam list.
diff --git a/man/utils.Rd b/man/utils.Rd
index 3247b63..5d9193e 100644
--- a/man/utils.Rd
+++ b/man/utils.Rd
@@ -53,6 +53,7 @@
 \alias{flag_hitsInRadius}
 \alias{flag_hitsInBlk}
 \alias{get_orderedTips}
+\alias{pull_pairwise}
 \title{Generic internal functions used by genespace}
 \usage{
 .onAttach(...)
@@ -175,6 +176,8 @@ flag_hitsInRadius(x, y, isAnchor, radius)
 flag_hitsInBlk(x, y, blkID)
 
 get_orderedTips(treFile, ladderize = TRUE, genomeIDs)
+
+pull_pairwise(gsParam, verbose)
 }
 \arguments{
 \item{...}{additional parameters passed on to other functions
@@ -240,6 +243,8 @@ If called, \code{utils} returns its own arguments.}
 \item{treFile}{file.path to the tree file.}
 
 \item{ladderize}{logical, should the tree be ladderized?}
+
+\item{verbose}{logical, should updates be printed to the console?}
 }
 \description{
 \code{utils} Convience functions for genespace, not meant to be called
@@ -372,4 +377,6 @@ radius of anchors using dbscan
 \code{flag_hitsInBlk} finds hits within the bounding coordinates of blocks
 
 \code{get_orderedTips} Respect ordering of tree when ladderized
+
+\code{pull_pairwise} Builds new pairwise files in /syntenicHits
 }