DESCRIPTION

Encoding: UTF-8
Package: sigfit
Type: Package
Title: Flexible Bayesian inference of mutational signatures
Version: 2.2
Date: 2021-10-22
Authors@R: c(person("Kevin", "Gori", email = "kcg25@cam.ac.uk", role = c("aut", "cre")),
             person("Adrian", "Baez-Ortega", email = "ab2324@cam.ac.uk", role = "aut"))
Description: This package implements Bayesian models for fitting and
    extracting mixtures of mutational signatures from mutation count
    data. It provides interfaces to four different Bayesian signature
    models (multinomial, Poisson, normal and negative binomial), as
    well as auxiliary functions for analysing and plotting resulting
    data. Markov chain Monte Carlo sampling is performed using Stan.
License: GPL (>=3)
LazyData: false
Biarch: true
Depends: 
    R (>= 3.4.0)
Imports: 
    methods,
    Rcpp (>= 0.12.0),
    rstan (>= 2.18.1),
    rstantools (>= 2.0.0),
    coda (>= 0.19),
    clue (>= 0.3),
    knitr,
    rmarkdown
LinkingTo: 
    BH (>= 1.66.0),
    Rcpp (>= 0.12.0),
    RcppEigen (>= 0.3.3.3.0),
    rstan (>= 2.18.1),
    StanHeaders (>= 2.18.0)
Suggests:
    markdown
SystemRequirements: GNU make
RoxygenNote: 7.1.1
NeedsCompilation: yes
VignetteBuilder: knitr, rmarkdown