From 1fc1bd95512a68c9e3404941d6de54dcb68df784 Mon Sep 17 00:00:00 2001 From: Mary Maranga <38289520+Marysteph@users.noreply.github.com> Date: Tue, 21 Jan 2025 17:08:19 +0000 Subject: [PATCH] Update smst module --- kleborate/modules/klebsiella__smst/klebsiella__smst.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/kleborate/modules/klebsiella__smst/klebsiella__smst.py b/kleborate/modules/klebsiella__smst/klebsiella__smst.py index c990bbc..658899a 100644 --- a/kleborate/modules/klebsiella__smst/klebsiella__smst.py +++ b/kleborate/modules/klebsiella__smst/klebsiella__smst.py @@ -48,7 +48,7 @@ def add_cli_options(parser): group.add_argument('--klebsiella__smst_required_exact_matches', type=int, default=2, help='At least this many exact matches are required to call an ST') group.add_argument('--klebsiella__smst_min_gene_count', type=int, default=2, - help='At least this many exact alleles required to report a novel allele) + help='At least this many exact alleles required to report a novel allele') return group