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hicberg.yaml
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name: hicberg
channels:
- anaconda
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- aiohttp=3.9.3=py311h459d7ec_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- amply=0.1.6=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argparse-dataclass=2.0.0=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- bedtools=2.31.1=hf5e1c6e_0
- boto=2.49.0=py_0
- boto3=1.34.51=pyhd8ed1ab_0
- botocore=1.34.51=pyge310_1234567_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py311hb755f60_1
- bz2file=0.98=py_0
- bzip2=1.0.8=hd590300_5
- c-ares=1.27.0=hd590300_0
- ca-certificates=2024.8.30=hbcca054_0
- cachetools=5.3.3=pyhd8ed1ab_0
- certifi=2024.8.30=pyhd8ed1ab_0
- cffi=1.16.0=py311hb3a22ac_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- cloudpickle=3.0.0=pyhd8ed1ab_0
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.8=ha2443b9_0
- coin-or-utils=2.11.9=hee58242_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- conda-inject=1.3.1=pyhd8ed1ab_0
- configargparse=1.7=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.2.0=py311h9547e67_0
- cryptography=42.0.5=py311h63ff55d_0
- cutadapt=4.9=py311hdad781d_2
- cycler=0.12.1=pyhd8ed1ab_0
- datrie=0.8.2=py311h459d7ec_7
- dnaio=1.2.2=py311hdad781d_0
- docutils=0.20.1=py311h38be061_3
- dpath=2.1.6=pyha770c72_0
- eido=0.2.2=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- freetype=2.12.1=h267a509_2
- frozenlist=1.4.1=py311h459d7ec_0
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.42=pyhd8ed1ab_0
- google-api-core=2.17.1=pyhd8ed1ab_0
- google-auth=2.28.1=pyhca7485f_0
- google-cloud-core=2.4.1=pyhd8ed1ab_0
- google-cloud-storage=2.14.0=pyhca7485f_0
- google-crc32c=1.1.2=py311h9b08b9c_5
- google-resumable-media=2.7.0=pyhd8ed1ab_0
- googleapis-common-protos=1.62.0=pyhd8ed1ab_0
- grpcio=1.61.1=py311ha6695c7_0
- htslib=1.19.1=h81da01d_1
- humanfriendly=10.0=pyhd8ed1ab_6
- idna=3.6=pyhd8ed1ab_0
- immutables=0.20=py311h459d7ec_1
- importlib_resources=6.1.2=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- isa-l=2.31.0=h4bc722e_2
- jinja2=3.1.3=pyhd8ed1ab_0
- jmespath=1.0.1=pyhd8ed1ab_0
- jsonschema=4.21.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jupyter_core=5.7.1=py311h38be061_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py311h9547e67_1
- krb5=1.21.2=h659d440_0
- lcms2=2.15=h7f713cb_2
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20240116.1=cxx17_h59595ed_1
- libblas=3.9.0=21_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=21_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=8.5.0=hca28451_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libffi=3.4.2=h7f98852_5
- libgcc=14.2.0=h77fa898_1
- libgcc-ng=14.2.0=h69a702a_1
- libgfortran-ng=13.2.0=h69a702a_5
- libgfortran5=13.2.0=ha4646dd_5
- libgomp=14.2.0=h77fa898_1
- libgrpc=1.61.1=hccd595a_0
- libjpeg-turbo=2.1.5.1=hd590300_1
- liblapack=3.9.0=21_linux64_openblas
- liblapacke=3.9.0=21_linux64_openblas
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.26=pthreads_h413a1c8_0
- libpng=1.6.42=h2797004_0
- libprotobuf=4.25.2=h08a7969_1
- libre2-11=2023.09.01=h5a48ba9_2
- libsqlite=3.45.1=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.2.0=hc0a3c3a_1
- libstdcxx-ng=13.2.0=h7e041cc_5
- libtiff=4.6.0=h8b53f26_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libzlib=1.2.13=hd590300_5
- logmuse=0.2.6=pyh8c360ce_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.5=py311h459d7ec_0
- matplotlib-base=3.8.3=py311h54ef318_0
- mdurl=0.1.2=pyhd8ed1ab_0
- multidict=6.0.5=py311h459d7ec_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-connector-c=6.1.11=h659d440_1008
- nbformat=5.9.2=pyhd8ed1ab_0
- ncurses=6.4=h59595ed_2
- numpy=1.26.4=py311h64a7726_0
- openjpeg=2.5.0=h488ebb8_3
- openssl=3.3.2=hb9d3cd8_0
- packaging=23.2=pyhd8ed1ab_0
- pbzip2=1.1.13=h1fcc475_2
- peppy=0.40.1=pyhd8ed1ab_0
- pigz=2.8=h2797004_0
- pip=24.0=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- plac=1.4.3=pyhd8ed1ab_0
- platformdirs=4.2.0=pyhd8ed1ab_0
- pluggy=1.4.0=pyhd8ed1ab_0
- protobuf=4.25.2=py311h7b78aeb_0
- psutil=5.9.8=py311h459d7ec_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.8.0=py311h38be061_0
- pyasn1=0.5.1=pyhd8ed1ab_0
- pyasn1-modules=0.3.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.17.2=pyhd8ed1ab_0
- pynvml=11.4.1=pyhd8ed1ab_0
- pyopenssl=24.0.0=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- pytest=8.0.2=pyhd8ed1ab_0
- python=3.11.0=he550d4f_1_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-isal=1.7.1=py311h9ecbd09_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python-zlib-ng=0.5.1=py311h1a83624_0
- python_abi=3.11=4_cp311
- pytz=2024.1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0.1=py311h459d7ec_1
- re2=2023.09.01=h7f4b329_2
- readline=8.2=h8228510_1
- referencing=0.33.0=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- reretry=0.11.8=pyhd8ed1ab_0
- rich=13.7.0=pyhd8ed1ab_0
- rpds-py=0.18.0=py311h46250e7_0
- rsa=4.9=pyhd8ed1ab_0
- s3transfer=0.10.0=pyhd8ed1ab_0
- samtools=1.19.2=h50ea8bc_0
- scalene=1.5.37=py311hb755f60_0
- seaborn=0.12.2=py311h06a4308_0
- setuptools=69.1.0=pyhd8ed1ab_1
- six=1.16.0=pyh6c4a22f_0
- slack-sdk=3.27.1=pyha770c72_0
- slack_sdk=3.27.1=hd8ed1ab_0
- smart_open=3.0.0=pyh9f0ad1d_0
- smmap=5.0.0=pyhd8ed1ab_0
- snakemake=8.5.3=hdfd78af_0
- snakemake-interface-common=1.17.1=pyhdfd78af_0
- snakemake-interface-executor-plugins=8.2.0=pyhdfd78af_0
- snakemake-interface-report-plugins=1.0.0=pyhdfd78af_0
- snakemake-interface-storage-plugins=3.1.0=pyhdfd78af_0
- snakemake-minimal=8.5.3=pyhdfd78af_0
- stopit=1.1.2=py_0
- tabulate=0.9.0=pyhd8ed1ab_1
- throttler=1.2.2=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.10=pyhd8ed1ab_0
- traitlets=5.14.1=pyhd8ed1ab_0
- typing_extensions=4.10.0=pyha770c72_0
- tzdata=2024a=h0c530f3_0
- ubiquerg=0.7.0=pyhd8ed1ab_0
- ucsc-bedgraphtobigwig=455=h2a80c09_0
- veracitools=0.1.3=py_0
- wheel=0.42.0=pyhd8ed1ab_0
- wrapt=1.16.0=py311h459d7ec_0
- xopen=2.0.2=pyh707e725_1
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yarl=1.9.4=py311h459d7ec_0
- yte=1.5.4=pyha770c72_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib-ng=2.2.2=h5888daf_0
- zstandard=0.22.0=py311haa97af0_0
- zstd=1.5.5=hfc55251_0
- pip:
- alabaster==0.7.16
- asciitree==0.3.3
- babel==2.14.0
- bioframe==0.6.1
- biopython==1.83
- click==8.1.7
- cooler==0.9.3
- cython==3.0.8
- cytoolz==0.12.3
- deeptools==3.5.4.post1
- deeptoolsintervals==0.1.9
- dill==0.3.8
- docopt==0.6.2
- fonttools==4.49.0
- funcy==2.0
- h5py==3.10.0
- hicstuff==3.2.2
- imagesize==1.4.1
- importlib-metadata==7.0.1
- ipympl==0.9.3
- ipython-genutils==0.2.0
- ipywidgets==8.1.2
- joblib==1.3.2
- jupyterlab-widgets==3.0.10
- multiprocess==0.70.16
- natsort==8.4.0
- ncls==0.0.68
- numpydoc==1.6.0
- pandas==2.2.0
- patsy==0.5.6
- pillow==10.2.0
- plotly==5.19.0
- py2bit==0.3.0
- pybedtools==0.9.1
- pybigwig==0.3.22
- pyfaidx==0.8.1.1
- pyfastx==2.0.2
- pyranges==0.0.129
- pysam==0.22.0
- scikit-learn==1.4.1.post1
- scipy==1.12.0
- simplejson==3.19.2
- snowballstemmer==2.2.0
- sorted-nearest==0.0.39
- sphinx==7.2.6
- sphinxcontrib-applehelp==1.0.8
- sphinxcontrib-devhelp==1.0.6
- sphinxcontrib-htmlhelp==2.0.5
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.7
- sphinxcontrib-serializinghtml==1.1.10
- statsmodels==0.14.1
- tenacity==8.2.3
- threadpoolctl==3.3.0
- toolz==0.12.1
- urllib3==2.2.1
- widgetsnbextension==4.0.10
prefix: /home/sardine/mambaforge/envs/hicberg