python runGMExperiments.py

[yinshiyi]

When I run this step the following error pop out, thanks for your time
('H3K27AC', 'chr13', 0.4998916106655105)
('H3K27AC', 'chr12', 0.5)
('H3K27AC', 'chr11', 0.5001105460977228)
('H3K27AC', 'chr10', 0.5001097694840835)
('H3K27AC', 'chr17', 0.5001108401684771)
('H3K27AC', 'chr16', 0.4998892089519167)
('H3K27AC', 'chr15', 0.5)
('H3K27AC', 'chr14', 0.5)
('H3K27AC', 'chr19', 0.5)
('H3K27AC', 'chr18', 0.4998903749177812)
('H3K27AC', 'chr22', 0.5)
('H3K27AC', 'chr20', 0.5)
('H3K27AC', 'chr21', 0.4998915165979605)
('H3K27AC', 'chr7', 0.49989170457006715)
('H3K27AC', 'chr6', 0.5001103509159126)
('H3K27AC', 'chr5', 0.49989281886388)
('H3K27AC', 'chr4', 0.5)
('H3K27AC', 'chr3', 0.49988669839111716)
('H3K27AC', 'chr2', 0.4998906625847365)
('H3K27AC', 'chr1', 0.49988771614641814)
('H3K27AC', 'chr9', 0.5001109385400488)
('H3K27AC', 'chr8', 0.5)
Writing output to /mnt/NFS/homeGene/HarrisLab/sxx128/denoise/data/datasets/processed-seq/GM12878_5+1marks-K4me3_all_subsample-0.5e6-None_rS-0_numEx-100000_seqLen-1001_peakFrac-0.5_peaksFac-H3K27AC_norm-arcsinh.npz
Traceback (most recent call last):
File "runGMExperiments.py", line 70, in
test_GM18526()
File "runGMExperiments.py", line 65, in test_GM18526
run_model(model_params)
File "runGMExperiments.py", line 19, in run_model
m.compile_and_train_model()
File "/mnt/NFS/homeGene/HarrisLab/sxx128/denoise/coda/models.py", line 297, in compile_and_train_model
self.train_dataset)
File "/mnt/NFS/homeGene/HarrisLab/sxx128/denoise/coda/models.py", line 274, in get_processed_data
Y = self.process_Y(Y)
File "/mnt/NFS/homeGene/HarrisLab/sxx128/denoise/coda/models.py", line 941, in process_Y
return Y[:, mid:mid+1, :]
TypeError: slice indices must be integers or None or have an index method