2024-04-15T15:17:47.5429417Z Current runner version: '2.315.0' 2024-04-15T15:17:47.5453201Z ##[group]Operating System 2024-04-15T15:17:47.5453964Z Ubuntu 2024-04-15T15:17:47.5454272Z 22.04.4 2024-04-15T15:17:47.5454640Z LTS 2024-04-15T15:17:47.5455052Z ##[endgroup] 2024-04-15T15:17:47.5455393Z ##[group]Runner Image 2024-04-15T15:17:47.5455838Z Image: ubuntu-22.04 2024-04-15T15:17:47.5456313Z Version: 20240407.1.0 2024-04-15T15:17:47.5457276Z Included Software: https://github.com/actions/runner-images/blob/ubuntu22/20240407.1/images/ubuntu/Ubuntu2204-Readme.md 2024-04-15T15:17:47.5458728Z Image Release: https://github.com/actions/runner-images/releases/tag/ubuntu22%2F20240407.1 2024-04-15T15:17:47.5459671Z ##[endgroup] 2024-04-15T15:17:47.5460087Z ##[group]Runner Image Provisioner 2024-04-15T15:17:47.5460543Z 2.0.361.1 2024-04-15T15:17:47.5460959Z ##[endgroup] 2024-04-15T15:17:47.5463241Z ##[group]GITHUB_TOKEN Permissions 2024-04-15T15:17:47.5464963Z Actions: write 2024-04-15T15:17:47.5465648Z Attestations: write 2024-04-15T15:17:47.5466251Z Checks: write 2024-04-15T15:17:47.5466665Z Contents: write 2024-04-15T15:17:47.5467021Z Deployments: write 2024-04-15T15:17:47.5467564Z Discussions: write 2024-04-15T15:17:47.5468033Z Issues: write 2024-04-15T15:17:47.5468360Z Metadata: read 2024-04-15T15:17:47.5468821Z Packages: write 2024-04-15T15:17:47.5469199Z Pages: write 2024-04-15T15:17:47.5469554Z PullRequests: write 2024-04-15T15:17:47.5470271Z RepositoryProjects: write 2024-04-15T15:17:47.5470729Z SecurityEvents: write 2024-04-15T15:17:47.5471113Z Statuses: write 2024-04-15T15:17:47.5471585Z ##[endgroup] 2024-04-15T15:17:47.5474703Z Secret source: Actions 2024-04-15T15:17:47.5475264Z Prepare workflow directory 2024-04-15T15:17:47.6526317Z Prepare all required actions 2024-04-15T15:17:47.6684437Z Getting action download info 2024-04-15T15:17:47.8569580Z Download action repository 'actions/checkout@v2' (SHA:ee0669bd1cc54295c223e0bb666b733df41de1c5) 2024-04-15T15:17:47.9776041Z Download action repository 'r-lib/actions@v2' (SHA:b7e68d63e51bdf225997973e2add36d551f60f02) 2024-04-15T15:17:56.3724941Z Download action repository 'actions/cache@v2' (SHA:8492260343ad570701412c2f464a5877dc76bace) 2024-04-15T15:17:56.6015162Z Download action repository 'actions/upload-artifact@main' (SHA:ef09cdac3e2d3e60d8ccadda691f4f1cec5035cb) 2024-04-15T15:17:56.7498360Z Download action repository 'docker/build-push-action@v1' (SHA:3e7a4f6646880c6f63758d73ac32392d323eaf8f) 2024-04-15T15:17:57.1601356Z Complete job name: ubuntu-latest (devel) 2024-04-15T15:17:57.2244595Z ##[group]Pull down action image 'docker/github-actions:v1' 2024-04-15T15:17:57.2258375Z ##[command]/usr/bin/docker pull docker/github-actions:v1 2024-04-15T15:17:57.6559444Z v1: Pulling from docker/github-actions 2024-04-15T15:17:57.6560495Z aad63a933944: Pulling fs layer 2024-04-15T15:17:57.6561066Z 69846a6807b3: Pulling fs layer 2024-04-15T15:17:57.6561852Z 5517540127c6: Pulling fs layer 2024-04-15T15:17:57.6562403Z da4bc653673c: Pulling fs layer 2024-04-15T15:17:57.6565940Z 7d6a82484b25: Pulling fs layer 2024-04-15T15:17:57.6566728Z 98d7178a08bc: Pulling fs layer 2024-04-15T15:17:57.6567256Z 06fedb666dd1: Pulling fs layer 2024-04-15T15:17:57.6567945Z 32b24c4afa9c: Pulling fs layer 2024-04-15T15:17:57.6568715Z da4bc653673c: Waiting 2024-04-15T15:17:57.6569173Z 7d6a82484b25: Waiting 2024-04-15T15:17:57.6569608Z 06fedb666dd1: Waiting 2024-04-15T15:17:57.6570218Z 98d7178a08bc: Waiting 2024-04-15T15:17:57.6570628Z 32b24c4afa9c: Waiting 2024-04-15T15:17:57.7683658Z 5517540127c6: Verifying Checksum 2024-04-15T15:17:57.7684895Z 5517540127c6: Download complete 2024-04-15T15:17:57.7969879Z 69846a6807b3: Verifying Checksum 2024-04-15T15:17:57.7971377Z 69846a6807b3: Download complete 2024-04-15T15:17:57.8076226Z aad63a933944: Verifying Checksum 2024-04-15T15:17:57.8076834Z aad63a933944: Download complete 2024-04-15T15:17:57.9087753Z aad63a933944: Pull complete 2024-04-15T15:17:57.9229018Z 7d6a82484b25: Verifying Checksum 2024-04-15T15:17:57.9229897Z 7d6a82484b25: Download complete 2024-04-15T15:17:58.0109984Z 98d7178a08bc: Verifying Checksum 2024-04-15T15:17:58.0111261Z 98d7178a08bc: Download complete 2024-04-15T15:17:58.0208660Z 06fedb666dd1: Verifying Checksum 2024-04-15T15:17:58.0209262Z 06fedb666dd1: Download complete 2024-04-15T15:17:58.1640485Z 69846a6807b3: Pull complete 2024-04-15T15:17:58.1790416Z 5517540127c6: Pull complete 2024-04-15T15:17:58.1896117Z 32b24c4afa9c: Verifying Checksum 2024-04-15T15:17:58.1896676Z 32b24c4afa9c: Download complete 2024-04-15T15:17:58.7843105Z da4bc653673c: Verifying Checksum 2024-04-15T15:17:58.7843766Z da4bc653673c: Download complete 2024-04-15T15:18:00.1205704Z da4bc653673c: Pull complete 2024-04-15T15:18:00.1940460Z 7d6a82484b25: Pull complete 2024-04-15T15:18:00.2100787Z 98d7178a08bc: Pull complete 2024-04-15T15:18:00.2196016Z 06fedb666dd1: Pull complete 2024-04-15T15:18:00.2611986Z 32b24c4afa9c: Pull complete 2024-04-15T15:18:00.2648010Z Digest: sha256:734ba0218b8eb812a7ca64b09d9262a9ee461907c611c3da20b41a5183f9c195 2024-04-15T15:18:00.2661924Z Status: Downloaded newer image for docker/github-actions:v1 2024-04-15T15:18:00.2672068Z docker.io/docker/github-actions:v1 2024-04-15T15:18:00.2695692Z ##[endgroup] 2024-04-15T15:18:00.2800036Z ##[group]Checking docker version 2024-04-15T15:18:00.2813655Z ##[command]/usr/bin/docker version --format '{{.Server.APIVersion}}' 2024-04-15T15:18:00.2983455Z '1.43' 2024-04-15T15:18:00.3003933Z Docker daemon API version: '1.43' 2024-04-15T15:18:00.3004476Z ##[command]/usr/bin/docker version --format '{{.Client.APIVersion}}' 2024-04-15T15:18:00.3179303Z '1.43' 2024-04-15T15:18:00.3192398Z Docker client API version: '1.43' 2024-04-15T15:18:00.3197792Z ##[endgroup] 2024-04-15T15:18:00.3201036Z ##[group]Clean up resources from previous jobs 2024-04-15T15:18:00.3206357Z ##[command]/usr/bin/docker ps --all --quiet --no-trunc --filter "label=da51d6" 2024-04-15T15:18:00.3343777Z ##[command]/usr/bin/docker network prune --force --filter "label=da51d6" 2024-04-15T15:18:00.3486525Z ##[endgroup] 2024-04-15T15:18:00.3486843Z ##[group]Create local container network 2024-04-15T15:18:00.3496964Z ##[command]/usr/bin/docker network create --label da51d6 github_network_a42e48f0a7e5480499fc5f2869798a30 2024-04-15T15:18:00.4330391Z bee54f3c247f47408abf480d65c9aa674b8c73f8d4816d77cbdf10ac56f26cf9 2024-04-15T15:18:00.4352335Z ##[endgroup] 2024-04-15T15:18:00.4430122Z ##[group]Starting job container 2024-04-15T15:18:00.4475219Z ##[command]/usr/bin/docker pull bioconductor/bioconductor_docker:devel 2024-04-15T15:18:00.7070121Z devel: Pulling from bioconductor/bioconductor_docker 2024-04-15T15:18:00.7931467Z bccd10f490ab: Already exists 2024-04-15T15:18:00.7947005Z 3fc7592ceb7f: Pulling fs layer 2024-04-15T15:18:00.7947541Z 3b2b0c0d42b9: Pulling fs layer 2024-04-15T15:18:00.7948055Z 4a2103fc96cd: Pulling fs layer 2024-04-15T15:18:00.7948545Z 5ffe3b9c3f7a: Pulling fs layer 2024-04-15T15:18:00.7949029Z 2eaa733b24e1: Pulling fs layer 2024-04-15T15:18:00.7949499Z 0649fb54f715: Pulling fs layer 2024-04-15T15:18:00.7950146Z a38780dbb7d9: Pulling fs layer 2024-04-15T15:18:00.7950613Z 10827e439100: Pulling fs layer 2024-04-15T15:18:00.7951288Z 5ffe3b9c3f7a: Waiting 2024-04-15T15:18:00.7951789Z 2eaa733b24e1: Waiting 2024-04-15T15:18:00.7952075Z 0649fb54f715: Waiting 2024-04-15T15:18:00.7952313Z a38780dbb7d9: Waiting 2024-04-15T15:18:00.7952691Z 10827e439100: Waiting 2024-04-15T15:18:00.9057358Z 4a2103fc96cd: Verifying Checksum 2024-04-15T15:18:00.9057988Z 4a2103fc96cd: Download complete 2024-04-15T15:18:00.9149390Z 3fc7592ceb7f: Verifying Checksum 2024-04-15T15:18:00.9150351Z 3fc7592ceb7f: Download complete 2024-04-15T15:18:00.9259388Z 3fc7592ceb7f: Pull complete 2024-04-15T15:18:01.2338432Z 5ffe3b9c3f7a: Verifying Checksum 2024-04-15T15:18:01.2339057Z 5ffe3b9c3f7a: Download complete 2024-04-15T15:18:01.3342595Z 0649fb54f715: Download complete 2024-04-15T15:18:01.4481678Z a38780dbb7d9: Verifying Checksum 2024-04-15T15:18:01.4482877Z a38780dbb7d9: Download complete 2024-04-15T15:18:04.9005514Z 2eaa733b24e1: Verifying Checksum 2024-04-15T15:18:04.9006057Z 2eaa733b24e1: Download complete 2024-04-15T15:18:05.0776944Z 3b2b0c0d42b9: Verifying Checksum 2024-04-15T15:18:05.0777518Z 3b2b0c0d42b9: Download complete 2024-04-15T15:18:14.6786159Z 10827e439100: Verifying Checksum 2024-04-15T15:18:14.6786724Z 10827e439100: Download complete 2024-04-15T15:18:14.8122360Z 3b2b0c0d42b9: Pull complete 2024-04-15T15:18:14.9873414Z 4a2103fc96cd: Pull complete 2024-04-15T15:18:15.7670879Z 5ffe3b9c3f7a: Pull complete 2024-04-15T15:18:29.0432791Z 2eaa733b24e1: Pull complete 2024-04-15T15:18:29.0678854Z 0649fb54f715: Pull complete 2024-04-15T15:18:29.0853565Z a38780dbb7d9: Pull complete 2024-04-15T15:18:58.9539749Z 10827e439100: Pull complete 2024-04-15T15:18:58.9831061Z Digest: sha256:3b42e8cbd3d86cc1aa2a5c4345e718e783bbadf612b3af1a1924360cab5262b9 2024-04-15T15:18:58.9845227Z Status: Downloaded newer image for bioconductor/bioconductor_docker:devel 2024-04-15T15:18:58.9853212Z docker.io/bioconductor/bioconductor_docker:devel 2024-04-15T15:18:58.9990136Z ##[command]/usr/bin/docker create --name 13075ce3795f434dabd74aa90a90f74f_bioconductorbioconductor_dockerdevel_e55861 --label da51d6 --workdir /__w/plotgardener/plotgardener --network github_network_a42e48f0a7e5480499fc5f2869798a30 -e "HOME=/github/home" -e GITHUB_ACTIONS=true -e CI=true -v "/var/run/docker.sock":"/var/run/docker.sock" -v "/home/runner/work":"/__w" -v "/home/runner/runners/2.315.0/externals":"/__e":ro -v "/home/runner/work/_temp":"/__w/_temp" -v "/home/runner/work/_actions":"/__w/_actions" -v "/opt/hostedtoolcache":"/__t" -v "/home/runner/work/_temp/_github_home":"/github/home" -v "/home/runner/work/_temp/_github_workflow":"/github/workflow" --entrypoint "tail" bioconductor/bioconductor_docker:devel "-f" "/dev/null" 2024-04-15T15:18:59.0499183Z 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 2024-04-15T15:18:59.0525735Z ##[command]/usr/bin/docker start 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 2024-04-15T15:18:59.3013682Z 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 2024-04-15T15:18:59.3034974Z ##[command]/usr/bin/docker ps --all --filter id=001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 --filter status=running --no-trunc --format "{{.ID}} {{.Status}}" 2024-04-15T15:18:59.3152316Z 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 Up Less than a second 2024-04-15T15:18:59.3171176Z ##[command]/usr/bin/docker inspect --format "{{range .Config.Env}}{{println .}}{{end}}" 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 2024-04-15T15:18:59.3296770Z HOME=/github/home 2024-04-15T15:18:59.3297231Z GITHUB_ACTIONS=true 2024-04-15T15:18:59.3297670Z CI=true 2024-04-15T15:18:59.3299612Z PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 2024-04-15T15:18:59.3300624Z R_VERSION=devel 2024-04-15T15:18:59.3301040Z R_HOME=/usr/local/lib/R 2024-04-15T15:18:59.3301470Z TZ=Etc/UTC 2024-04-15T15:18:59.3301863Z CRAN=https://cloud.r-project.org 2024-04-15T15:18:59.3306937Z LANG=en_US.UTF-8 2024-04-15T15:18:59.3307329Z S6_VERSION=v2.1.0.2 2024-04-15T15:18:59.3307739Z RSTUDIO_VERSION=2023.12.0+369 2024-04-15T15:18:59.3309108Z DEFAULT_USER=rstudio 2024-04-15T15:18:59.3309543Z PANDOC_VERSION=default 2024-04-15T15:18:59.3310201Z QUARTO_VERSION=default 2024-04-15T15:18:59.3310816Z BIOCONDUCTOR_USE_CONTAINER_REPOSITORY=TRUE 2024-04-15T15:18:59.3311570Z TARGETARCH=amd64 2024-04-15T15:18:59.3311973Z TARGETPLATFORM=linux/amd64 2024-04-15T15:18:59.3312414Z PLATFORM=linux/amd64 2024-04-15T15:18:59.3312838Z LIBSBML_CFLAGS=-I/usr/include 2024-04-15T15:18:59.3313294Z LIBSBML_LIBS=-lsbml 2024-04-15T15:18:59.3313707Z BIOCONDUCTOR_DOCKER_VERSION=3.19.28 2024-04-15T15:18:59.3314230Z BIOCONDUCTOR_VERSION=3.19 2024-04-15T15:18:59.3314712Z BIOCONDUCTOR_NAME=bioconductor_docker 2024-04-15T15:18:59.3326126Z ##[endgroup] 2024-04-15T15:18:59.3353465Z ##[group]Waiting for all services to be ready 2024-04-15T15:18:59.3355002Z ##[endgroup] 2024-04-15T15:18:59.3659868Z ##[group]Run mkdir /__w/_temp/Library 2024-04-15T15:18:59.3660306Z mkdir /__w/_temp/Library 2024-04-15T15:18:59.3660753Z echo ".libPaths('/__w/_temp/Library')" > ~/.Rprofile 2024-04-15T15:18:59.3664046Z shell: sh -e {0} 2024-04-15T15:18:59.3664301Z env: 2024-04-15T15:18:59.3664507Z has_testthat: false 2024-04-15T15:18:59.3664767Z run_covr: false 2024-04-15T15:18:59.3664999Z run_pkgdown: false 2024-04-15T15:18:59.3665240Z has_RUnit: false 2024-04-15T15:18:59.3665484Z cache-version: cache-v1 2024-04-15T15:18:59.3665749Z run_docker: false 2024-04-15T15:18:59.3666010Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:18:59.3666504Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:18:59.3666978Z NOT_CRAN: true 2024-04-15T15:18:59.3667198Z TZ: UTC 2024-04-15T15:18:59.3667731Z GITHUB_TOKEN: *** 2024-04-15T15:18:59.3668113Z GITHUB_PAT: *** 2024-04-15T15:18:59.3668353Z ##[endgroup] 2024-04-15T15:18:59.4890632Z ##[group]Run actions/checkout@v2 2024-04-15T15:18:59.4890979Z with: 2024-04-15T15:18:59.4891241Z repository: PhanstielLab/plotgardener 2024-04-15T15:18:59.4891762Z token: *** 2024-04-15T15:18:59.4891992Z ssh-strict: true 2024-04-15T15:18:59.4892249Z persist-credentials: true 2024-04-15T15:18:59.4892539Z clean: true 2024-04-15T15:18:59.4892757Z fetch-depth: 1 2024-04-15T15:18:59.4892987Z lfs: false 2024-04-15T15:18:59.4893203Z submodules: false 2024-04-15T15:18:59.4893453Z set-safe-directory: true 2024-04-15T15:18:59.4893718Z env: 2024-04-15T15:18:59.4893919Z has_testthat: false 2024-04-15T15:18:59.4894161Z run_covr: false 2024-04-15T15:18:59.4894389Z run_pkgdown: false 2024-04-15T15:18:59.4894629Z has_RUnit: false 2024-04-15T15:18:59.4894858Z cache-version: cache-v1 2024-04-15T15:18:59.4895122Z run_docker: false 2024-04-15T15:18:59.4895391Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:18:59.4895925Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:18:59.4896379Z NOT_CRAN: true 2024-04-15T15:18:59.4896604Z TZ: UTC 2024-04-15T15:18:59.4896947Z GITHUB_TOKEN: *** 2024-04-15T15:18:59.4897290Z GITHUB_PAT: *** 2024-04-15T15:18:59.4897518Z ##[endgroup] 2024-04-15T15:18:59.4996467Z ##[command]/usr/bin/docker exec 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 sh -c "cat /etc/*release | grep ^ID" 2024-04-15T15:18:59.9115132Z Syncing repository: PhanstielLab/plotgardener 2024-04-15T15:18:59.9116682Z ##[group]Getting Git version info 2024-04-15T15:18:59.9117271Z Working directory is '/__w/plotgardener/plotgardener' 2024-04-15T15:18:59.9117941Z [command]/usr/bin/git version 2024-04-15T15:18:59.9118232Z git version 2.34.1 2024-04-15T15:18:59.9118900Z ##[endgroup] 2024-04-15T15:18:59.9130758Z Temporarily overriding HOME='/__w/_temp/29b5e983-4aa8-4764-b3f7-74f52838b294' before making global git config changes 2024-04-15T15:18:59.9132349Z Adding repository directory to the temporary git global config as a safe directory 2024-04-15T15:18:59.9133779Z [command]/usr/bin/git config --global --add safe.directory /__w/plotgardener/plotgardener 2024-04-15T15:18:59.9183606Z Deleting the contents of '/__w/plotgardener/plotgardener' 2024-04-15T15:18:59.9189219Z ##[group]Initializing the repository 2024-04-15T15:18:59.9192778Z [command]/usr/bin/git init /__w/plotgardener/plotgardener 2024-04-15T15:18:59.9236760Z hint: Using 'master' as the name for the initial branch. This default branch name 2024-04-15T15:18:59.9237989Z hint: is subject to change. To configure the initial branch name to use in all 2024-04-15T15:18:59.9239320Z hint: of your new repositories, which will suppress this warning, call: 2024-04-15T15:18:59.9240086Z hint: 2024-04-15T15:18:59.9240687Z hint: git config --global init.defaultBranch 2024-04-15T15:18:59.9241312Z hint: 2024-04-15T15:18:59.9244375Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2024-04-15T15:18:59.9245354Z hint: 'development'. The just-created branch can be renamed via this command: 2024-04-15T15:18:59.9245830Z hint: 2024-04-15T15:18:59.9246087Z hint: git branch -m 2024-04-15T15:18:59.9250934Z Initialized empty Git repository in /__w/plotgardener/plotgardener/.git/ 2024-04-15T15:18:59.9259144Z [command]/usr/bin/git remote add origin https://github.com/PhanstielLab/plotgardener 2024-04-15T15:18:59.9301319Z ##[endgroup] 2024-04-15T15:18:59.9302150Z ##[group]Disabling automatic garbage collection 2024-04-15T15:18:59.9305985Z [command]/usr/bin/git config --local gc.auto 0 2024-04-15T15:18:59.9345385Z ##[endgroup] 2024-04-15T15:18:59.9346074Z ##[group]Setting up auth 2024-04-15T15:18:59.9352801Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2024-04-15T15:18:59.9391855Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :" 2024-04-15T15:18:59.9693708Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2024-04-15T15:18:59.9734586Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :" 2024-04-15T15:19:00.0009030Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2024-04-15T15:19:00.0059013Z ##[endgroup] 2024-04-15T15:19:00.0059822Z ##[group]Fetching the repository 2024-04-15T15:19:00.0069164Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +a161f7b63357ace24fc4953a655d13a7398334e2:refs/remotes/pull/113/merge 2024-04-15T15:19:00.2384125Z remote: Enumerating objects: 202, done. 2024-04-15T15:19:00.2385042Z remote: Counting objects: 0% (1/202) 2024-04-15T15:19:00.2385729Z remote: Counting objects: 1% (3/202) 2024-04-15T15:19:00.2386413Z remote: Counting objects: 2% (5/202) 2024-04-15T15:19:00.2387038Z remote: Counting objects: 3% (7/202) 2024-04-15T15:19:00.2387693Z remote: Counting objects: 4% (9/202) 2024-04-15T15:19:00.2388345Z remote: Counting objects: 5% (11/202) 2024-04-15T15:19:00.2389033Z remote: Counting objects: 6% (13/202) 2024-04-15T15:19:00.2390030Z remote: Counting objects: 7% (15/202) 2024-04-15T15:19:00.2390737Z remote: Counting objects: 8% (17/202) 2024-04-15T15:19:00.2391441Z remote: Counting objects: 9% (19/202) 2024-04-15T15:19:00.2392127Z remote: Counting objects: 10% (21/202) 2024-04-15T15:19:00.2392827Z remote: Counting objects: 11% (23/202) 2024-04-15T15:19:00.2393533Z remote: Counting objects: 12% (25/202) 2024-04-15T15:19:00.2395281Z remote: Counting objects: 13% (27/202) 2024-04-15T15:19:00.2397177Z remote: Counting objects: 14% (29/202) 2024-04-15T15:19:00.2397844Z remote: Counting objects: 15% (31/202) 2024-04-15T15:19:00.2398529Z remote: Counting objects: 16% (33/202) 2024-04-15T15:19:00.2399215Z remote: Counting objects: 17% (35/202) 2024-04-15T15:19:00.2399869Z remote: Counting objects: 18% (37/202) 2024-04-15T15:19:00.2400525Z remote: Counting objects: 19% (39/202) 2024-04-15T15:19:00.2401173Z remote: Counting objects: 20% (41/202) 2024-04-15T15:19:00.2401829Z remote: Counting objects: 21% (43/202) 2024-04-15T15:19:00.2402482Z remote: Counting objects: 22% (45/202) 2024-04-15T15:19:00.2403128Z remote: Counting objects: 23% (47/202) 2024-04-15T15:19:00.2403751Z remote: Counting objects: 24% (49/202) 2024-04-15T15:19:00.2404396Z remote: Counting objects: 25% (51/202) 2024-04-15T15:19:00.2405044Z remote: Counting objects: 26% (53/202) 2024-04-15T15:19:00.2405787Z remote: Counting objects: 27% (55/202) 2024-04-15T15:19:00.2406448Z remote: Counting objects: 28% (57/202) 2024-04-15T15:19:00.2407216Z remote: Counting objects: 29% (59/202) 2024-04-15T15:19:00.2407850Z remote: Counting objects: 30% (61/202) 2024-04-15T15:19:00.2408959Z remote: Counting objects: 31% (63/202) 2024-04-15T15:19:00.2409673Z remote: Counting objects: 32% (65/202) 2024-04-15T15:19:00.2410363Z remote: Counting objects: 33% (67/202) 2024-04-15T15:19:00.2411054Z remote: Counting objects: 34% (69/202) 2024-04-15T15:19:00.2411706Z remote: Counting objects: 35% (71/202) 2024-04-15T15:19:00.2412312Z remote: Counting objects: 36% (73/202) 2024-04-15T15:19:00.2412686Z remote: Counting objects: 37% (75/202) 2024-04-15T15:19:00.2413044Z remote: Counting objects: 38% (77/202) 2024-04-15T15:19:00.2413407Z remote: Counting objects: 39% (79/202) 2024-04-15T15:19:00.2413768Z remote: Counting objects: 40% (81/202) 2024-04-15T15:19:00.2414118Z remote: Counting objects: 41% (83/202) 2024-04-15T15:19:00.2414737Z remote: Counting objects: 42% (85/202) 2024-04-15T15:19:00.2415115Z remote: Counting objects: 43% (87/202) 2024-04-15T15:19:00.2415477Z remote: Counting objects: 44% (89/202) 2024-04-15T15:19:00.2415861Z remote: Counting objects: 45% (91/202) 2024-04-15T15:19:00.2416232Z remote: Counting objects: 46% (93/202) 2024-04-15T15:19:00.2416587Z remote: Counting objects: 47% (95/202) 2024-04-15T15:19:00.2416956Z remote: Counting objects: 48% (97/202) 2024-04-15T15:19:00.2417326Z remote: Counting objects: 49% (99/202) 2024-04-15T15:19:00.2417693Z remote: Counting objects: 50% (101/202) 2024-04-15T15:19:00.2418076Z remote: Counting objects: 51% (104/202) 2024-04-15T15:19:00.2418455Z remote: Counting objects: 52% (106/202) 2024-04-15T15:19:00.2418819Z remote: Counting objects: 53% (108/202) 2024-04-15T15:19:00.2419185Z remote: Counting objects: 54% (110/202) 2024-04-15T15:19:00.2419570Z remote: Counting objects: 55% (112/202) 2024-04-15T15:19:00.2419938Z remote: Counting objects: 56% (114/202) 2024-04-15T15:19:00.2420724Z remote: Counting objects: 57% (116/202) 2024-04-15T15:19:00.2421344Z remote: Counting objects: 58% (118/202) 2024-04-15T15:19:00.2421790Z remote: Counting objects: 59% (120/202) 2024-04-15T15:19:00.2422419Z remote: Counting objects: 60% (122/202) 2024-04-15T15:19:00.2423119Z remote: Counting objects: 61% (124/202) 2024-04-15T15:19:00.2423778Z remote: Counting objects: 62% (126/202) 2024-04-15T15:19:00.2424259Z remote: Counting objects: 63% (128/202) 2024-04-15T15:19:00.2424629Z remote: Counting objects: 64% (130/202) 2024-04-15T15:19:00.2425001Z remote: Counting objects: 65% (132/202) 2024-04-15T15:19:00.2425361Z remote: Counting objects: 66% (134/202) 2024-04-15T15:19:00.2425729Z remote: Counting objects: 67% (136/202) 2024-04-15T15:19:00.2426104Z remote: Counting objects: 68% (138/202) 2024-04-15T15:19:00.2426461Z remote: Counting objects: 69% (140/202) 2024-04-15T15:19:00.2426826Z remote: Counting objects: 70% (142/202) 2024-04-15T15:19:00.2427198Z remote: Counting objects: 71% (144/202) 2024-04-15T15:19:00.2427555Z remote: Counting objects: 72% (146/202) 2024-04-15T15:19:00.2427921Z remote: Counting objects: 73% (148/202) 2024-04-15T15:19:00.2428286Z remote: Counting objects: 74% (150/202) 2024-04-15T15:19:00.2428644Z remote: Counting objects: 75% (152/202) 2024-04-15T15:19:00.2429009Z remote: Counting objects: 76% (154/202) 2024-04-15T15:19:00.2429376Z remote: Counting objects: 77% (156/202) 2024-04-15T15:19:00.2430065Z remote: Counting objects: 78% (158/202) 2024-04-15T15:19:00.2430461Z remote: Counting objects: 79% (160/202) 2024-04-15T15:19:00.2430826Z remote: Counting objects: 80% (162/202) 2024-04-15T15:19:00.2431196Z remote: Counting objects: 81% (164/202) 2024-04-15T15:19:00.2431552Z remote: Counting objects: 82% (166/202) 2024-04-15T15:19:00.2431917Z remote: Counting objects: 83% (168/202) 2024-04-15T15:19:00.2432507Z remote: Counting objects: 84% (170/202) 2024-04-15T15:19:00.2432873Z remote: Counting objects: 85% (172/202) 2024-04-15T15:19:00.2433239Z remote: Counting objects: 86% (174/202) 2024-04-15T15:19:00.2433600Z remote: Counting objects: 87% (176/202) 2024-04-15T15:19:00.2433955Z remote: Counting objects: 88% (178/202) 2024-04-15T15:19:00.2434317Z remote: Counting objects: 89% (180/202) 2024-04-15T15:19:00.2434679Z remote: Counting objects: 90% (182/202) 2024-04-15T15:19:00.2435037Z remote: Counting objects: 91% (184/202) 2024-04-15T15:19:00.2435401Z remote: Counting objects: 92% (186/202) 2024-04-15T15:19:00.2435766Z remote: Counting objects: 93% (188/202) 2024-04-15T15:19:00.2436263Z remote: Counting objects: 94% (190/202) 2024-04-15T15:19:00.2436650Z remote: Counting objects: 95% (192/202) 2024-04-15T15:19:00.2437025Z remote: Counting objects: 96% (194/202) 2024-04-15T15:19:00.2437672Z remote: Counting objects: 97% (196/202) 2024-04-15T15:19:00.2438210Z remote: Counting objects: 98% (198/202) 2024-04-15T15:19:00.2438611Z remote: Counting objects: 99% (200/202) 2024-04-15T15:19:00.2439204Z remote: Counting objects: 100% (202/202) 2024-04-15T15:19:00.2439963Z remote: Counting objects: 100% (202/202), done. 2024-04-15T15:19:00.2440643Z remote: Compressing objects: 0% (1/195) 2024-04-15T15:19:00.2441038Z remote: Compressing objects: 1% (2/195) 2024-04-15T15:19:00.2441430Z remote: Compressing objects: 2% (4/195) 2024-04-15T15:19:00.2441821Z remote: Compressing objects: 3% (6/195) 2024-04-15T15:19:00.2442203Z remote: Compressing objects: 4% (8/195) 2024-04-15T15:19:00.2442595Z remote: Compressing objects: 5% (10/195) 2024-04-15T15:19:00.2443005Z remote: Compressing objects: 6% (12/195) 2024-04-15T15:19:00.2443409Z remote: Compressing objects: 7% (14/195) 2024-04-15T15:19:00.2443829Z remote: Compressing objects: 8% (16/195) 2024-04-15T15:19:00.2444231Z remote: Compressing objects: 9% (18/195) 2024-04-15T15:19:00.2444627Z remote: Compressing objects: 10% (20/195) 2024-04-15T15:19:00.2445022Z remote: Compressing objects: 11% (22/195) 2024-04-15T15:19:00.2445414Z remote: Compressing objects: 12% (24/195) 2024-04-15T15:19:00.2445808Z remote: Compressing objects: 13% (26/195) 2024-04-15T15:19:00.2446194Z remote: Compressing objects: 14% (28/195) 2024-04-15T15:19:00.2446590Z remote: Compressing objects: 15% (30/195) 2024-04-15T15:19:00.2446978Z remote: Compressing objects: 16% (32/195) 2024-04-15T15:19:00.2447367Z remote: Compressing objects: 17% (34/195) 2024-04-15T15:19:00.2447753Z remote: Compressing objects: 18% (36/195) 2024-04-15T15:19:00.2448138Z remote: Compressing objects: 19% (38/195) 2024-04-15T15:19:00.2448525Z remote: Compressing objects: 20% (39/195) 2024-04-15T15:19:00.2448910Z remote: Compressing objects: 21% (41/195) 2024-04-15T15:19:00.2449294Z remote: Compressing objects: 22% (43/195) 2024-04-15T15:19:00.2449680Z remote: Compressing objects: 23% (45/195) 2024-04-15T15:19:00.2450061Z remote: Compressing objects: 24% (47/195) 2024-04-15T15:19:00.2450446Z remote: Compressing objects: 25% (49/195) 2024-04-15T15:19:00.2450832Z remote: Compressing objects: 26% (51/195) 2024-04-15T15:19:00.2460608Z remote: Compressing objects: 27% (53/195) 2024-04-15T15:19:00.2461360Z remote: Compressing objects: 28% (55/195) 2024-04-15T15:19:00.2461882Z remote: Compressing objects: 29% (57/195) 2024-04-15T15:19:00.2482278Z remote: Compressing objects: 30% (59/195) 2024-04-15T15:19:00.2483048Z remote: Compressing objects: 31% (61/195) 2024-04-15T15:19:00.2483799Z remote: Compressing objects: 32% (63/195) 2024-04-15T15:19:00.2484235Z remote: Compressing objects: 33% (65/195) 2024-04-15T15:19:00.2504471Z remote: Compressing objects: 34% (67/195) 2024-04-15T15:19:00.2505172Z remote: Compressing objects: 35% (69/195) 2024-04-15T15:19:00.2505857Z remote: Compressing objects: 36% (71/195) 2024-04-15T15:19:00.2506405Z remote: Compressing objects: 37% (73/195) 2024-04-15T15:19:00.2512705Z remote: Compressing objects: 38% (75/195) 2024-04-15T15:19:00.2513783Z remote: Compressing objects: 39% (77/195) 2024-04-15T15:19:00.2514404Z remote: Compressing objects: 40% (78/195) 2024-04-15T15:19:00.2515162Z remote: Compressing objects: 41% (80/195) 2024-04-15T15:19:00.2515993Z remote: Compressing objects: 42% (82/195) 2024-04-15T15:19:00.2516719Z remote: Compressing objects: 43% (84/195) 2024-04-15T15:19:00.2517677Z remote: Compressing objects: 44% (86/195) 2024-04-15T15:19:00.2524266Z remote: Compressing objects: 45% (88/195) 2024-04-15T15:19:00.2527819Z remote: Compressing objects: 46% (90/195) 2024-04-15T15:19:00.2532246Z remote: Compressing objects: 47% (92/195) 2024-04-15T15:19:00.2537297Z remote: Compressing objects: 48% (94/195) 2024-04-15T15:19:00.2542093Z remote: Compressing objects: 49% (96/195) 2024-04-15T15:19:00.2545817Z remote: Compressing objects: 50% (98/195) 2024-04-15T15:19:00.2547170Z remote: Compressing objects: 51% (100/195) 2024-04-15T15:19:00.2553974Z remote: Compressing objects: 52% (102/195) 2024-04-15T15:19:00.2555463Z remote: Compressing objects: 53% (104/195) 2024-04-15T15:19:00.2556789Z remote: Compressing objects: 54% (106/195) 2024-04-15T15:19:00.2572542Z remote: Compressing objects: 55% (108/195) 2024-04-15T15:19:00.2593729Z remote: Compressing objects: 56% (110/195) 2024-04-15T15:19:00.2594647Z remote: Compressing objects: 57% (112/195) 2024-04-15T15:19:00.2595362Z remote: Compressing objects: 58% (114/195) 2024-04-15T15:19:00.2595891Z remote: Compressing objects: 59% (116/195) 2024-04-15T15:19:00.2596400Z remote: Compressing objects: 60% (117/195) 2024-04-15T15:19:00.2596910Z remote: Compressing objects: 61% (119/195) 2024-04-15T15:19:00.2609109Z remote: Compressing objects: 62% (121/195) 2024-04-15T15:19:00.2620954Z remote: Compressing objects: 63% (123/195) 2024-04-15T15:19:00.2622209Z remote: Compressing objects: 64% (125/195) 2024-04-15T15:19:00.2622834Z remote: Compressing objects: 65% (127/195) 2024-04-15T15:19:00.2639075Z remote: Compressing objects: 66% (129/195) 2024-04-15T15:19:00.2641402Z remote: Compressing objects: 67% (131/195) 2024-04-15T15:19:00.2646097Z remote: Compressing objects: 68% (133/195) 2024-04-15T15:19:00.2653670Z remote: Compressing objects: 69% (135/195) 2024-04-15T15:19:00.2661682Z remote: Compressing objects: 70% (137/195) 2024-04-15T15:19:00.2671415Z remote: Compressing objects: 71% (139/195) 2024-04-15T15:19:00.2691453Z remote: Compressing objects: 72% (141/195) 2024-04-15T15:19:00.2702777Z remote: Compressing objects: 73% (143/195) 2024-04-15T15:19:00.2703457Z remote: Compressing objects: 74% (145/195) 2024-04-15T15:19:00.2714099Z remote: Compressing objects: 75% (147/195) 2024-04-15T15:19:00.2729870Z remote: Compressing objects: 76% (149/195) 2024-04-15T15:19:00.2732247Z remote: Compressing objects: 77% (151/195) 2024-04-15T15:19:00.2762848Z remote: Compressing objects: 78% (153/195) 2024-04-15T15:19:00.2794021Z remote: Compressing objects: 79% (155/195) 2024-04-15T15:19:00.2794920Z remote: Compressing objects: 80% (156/195) 2024-04-15T15:19:00.2841121Z remote: Compressing objects: 81% (158/195) 2024-04-15T15:19:00.2856167Z remote: Compressing objects: 82% (160/195) 2024-04-15T15:19:00.2856682Z remote: Compressing objects: 83% (162/195) 2024-04-15T15:19:00.2863947Z remote: Compressing objects: 84% (164/195) 2024-04-15T15:19:00.2879149Z remote: Compressing objects: 85% (166/195) 2024-04-15T15:19:00.2904842Z remote: Compressing objects: 86% (168/195) 2024-04-15T15:19:00.2913367Z remote: Compressing objects: 87% (170/195) 2024-04-15T15:19:00.2944500Z remote: Compressing objects: 88% (172/195) 2024-04-15T15:19:00.2954147Z remote: Compressing objects: 89% (174/195) 2024-04-15T15:19:00.2957062Z remote: Compressing objects: 90% (176/195) 2024-04-15T15:19:00.2957811Z remote: Compressing objects: 91% (178/195) 2024-04-15T15:19:00.2958536Z remote: Compressing objects: 92% (180/195) 2024-04-15T15:19:00.2959208Z remote: Compressing objects: 93% (182/195) 2024-04-15T15:19:00.2960246Z remote: Compressing objects: 94% (184/195) 2024-04-15T15:19:00.2961001Z remote: Compressing objects: 95% (186/195) 2024-04-15T15:19:00.2961482Z remote: Compressing objects: 96% (188/195) 2024-04-15T15:19:00.2962134Z remote: Compressing objects: 97% (190/195) 2024-04-15T15:19:00.2962596Z remote: Compressing objects: 98% (192/195) 2024-04-15T15:19:00.2963052Z remote: Compressing objects: 99% (194/195) 2024-04-15T15:19:00.2963743Z remote: Compressing objects: 100% (195/195) 2024-04-15T15:19:00.2964385Z remote: Compressing objects: 100% (195/195), done. 2024-04-15T15:19:00.2983142Z Receiving objects: 0% (1/202) 2024-04-15T15:19:00.2983682Z Receiving objects: 1% (3/202) 2024-04-15T15:19:00.2986594Z Receiving objects: 2% (5/202) 2024-04-15T15:19:00.2987364Z Receiving objects: 3% (7/202) 2024-04-15T15:19:00.2988139Z Receiving objects: 4% (9/202) 2024-04-15T15:19:00.2988950Z Receiving objects: 5% (11/202) 2024-04-15T15:19:00.2989785Z Receiving objects: 6% (13/202) 2024-04-15T15:19:00.2992151Z Receiving objects: 7% (15/202) 2024-04-15T15:19:00.3013653Z Receiving objects: 8% (17/202) 2024-04-15T15:19:00.3021525Z Receiving objects: 9% (19/202) 2024-04-15T15:19:00.3025349Z Receiving objects: 10% (21/202) 2024-04-15T15:19:00.3025947Z Receiving objects: 11% (23/202) 2024-04-15T15:19:00.3026464Z Receiving objects: 12% (25/202) 2024-04-15T15:19:00.3053573Z Receiving objects: 13% (27/202) 2024-04-15T15:19:00.3056609Z Receiving objects: 14% (29/202) 2024-04-15T15:19:00.3057303Z Receiving objects: 15% (31/202) 2024-04-15T15:19:00.3057872Z Receiving objects: 16% (33/202) 2024-04-15T15:19:00.3058267Z Receiving objects: 17% (35/202) 2024-04-15T15:19:00.3069233Z Receiving objects: 18% (37/202) 2024-04-15T15:19:00.3069812Z Receiving objects: 19% (39/202) 2024-04-15T15:19:00.3075572Z Receiving objects: 20% (41/202) 2024-04-15T15:19:00.3078729Z Receiving objects: 21% (43/202) 2024-04-15T15:19:00.3089857Z Receiving objects: 22% (45/202) 2024-04-15T15:19:00.3090459Z Receiving objects: 23% (47/202) 2024-04-15T15:19:00.3094079Z Receiving objects: 24% (49/202) 2024-04-15T15:19:00.3123322Z Receiving objects: 25% (51/202) 2024-04-15T15:19:00.3124198Z Receiving objects: 26% (53/202) 2024-04-15T15:19:00.3132583Z Receiving objects: 27% (55/202) 2024-04-15T15:19:00.3144684Z Receiving objects: 28% (57/202) 2024-04-15T15:19:00.3178139Z Receiving objects: 29% (59/202) 2024-04-15T15:19:00.3187068Z Receiving objects: 30% (61/202) 2024-04-15T15:19:00.3197508Z Receiving objects: 31% (63/202) 2024-04-15T15:19:00.3198691Z Receiving objects: 32% (65/202) 2024-04-15T15:19:00.3199478Z Receiving objects: 33% (67/202) 2024-04-15T15:19:00.3200190Z Receiving objects: 34% (69/202) 2024-04-15T15:19:00.3231879Z Receiving objects: 35% (71/202) 2024-04-15T15:19:00.4033967Z Receiving objects: 36% (73/202) 2024-04-15T15:19:00.4035562Z Receiving objects: 37% (75/202) 2024-04-15T15:19:00.4036096Z Receiving objects: 38% (77/202) 2024-04-15T15:19:00.4036606Z Receiving objects: 39% (79/202) 2024-04-15T15:19:00.4037107Z Receiving objects: 40% (81/202) 2024-04-15T15:19:00.4037631Z Receiving objects: 41% (83/202) 2024-04-15T15:19:00.4038140Z Receiving objects: 42% (85/202) 2024-04-15T15:19:00.4038897Z Receiving objects: 43% (87/202) 2024-04-15T15:19:00.4039397Z Receiving objects: 44% (89/202) 2024-04-15T15:19:00.4039881Z Receiving objects: 45% (91/202) 2024-04-15T15:19:00.4040370Z Receiving objects: 46% (93/202) 2024-04-15T15:19:00.4040861Z Receiving objects: 47% (95/202) 2024-04-15T15:19:00.4041369Z Receiving objects: 48% (97/202) 2024-04-15T15:19:00.4045650Z Receiving objects: 49% (99/202) 2024-04-15T15:19:00.4096216Z Receiving objects: 50% (101/202) 2024-04-15T15:19:00.4157724Z Receiving objects: 51% (104/202) 2024-04-15T15:19:00.4210162Z Receiving objects: 52% (106/202) 2024-04-15T15:19:00.4211874Z Receiving objects: 53% (108/202) 2024-04-15T15:19:00.4212500Z Receiving objects: 54% (110/202) 2024-04-15T15:19:00.4214095Z Receiving objects: 55% (112/202) 2024-04-15T15:19:00.4217703Z Receiving objects: 56% (114/202) 2024-04-15T15:19:00.4219564Z Receiving objects: 57% (116/202) 2024-04-15T15:19:00.4220112Z Receiving objects: 58% (118/202) 2024-04-15T15:19:00.4220612Z Receiving objects: 59% (120/202) 2024-04-15T15:19:00.4220967Z Receiving objects: 60% (122/202) 2024-04-15T15:19:00.4221259Z Receiving objects: 61% (124/202) 2024-04-15T15:19:00.4221567Z Receiving objects: 62% (126/202) 2024-04-15T15:19:00.4221877Z Receiving objects: 63% (128/202) 2024-04-15T15:19:00.4609805Z Receiving objects: 64% (130/202) 2024-04-15T15:19:00.4664139Z Receiving objects: 65% (132/202) 2024-04-15T15:19:00.4665209Z Receiving objects: 66% (134/202) 2024-04-15T15:19:00.4666540Z Receiving objects: 67% (136/202) 2024-04-15T15:19:00.4667409Z Receiving objects: 68% (138/202) 2024-04-15T15:19:00.4668043Z Receiving objects: 69% (140/202) 2024-04-15T15:19:00.4668667Z Receiving objects: 70% (142/202) 2024-04-15T15:19:00.4669257Z Receiving objects: 71% (144/202) 2024-04-15T15:19:00.4670000Z Receiving objects: 72% (146/202) 2024-04-15T15:19:00.4670510Z Receiving objects: 73% (148/202) 2024-04-15T15:19:00.4670876Z Receiving objects: 74% (150/202) 2024-04-15T15:19:00.4692149Z Receiving objects: 75% (152/202) 2024-04-15T15:19:00.4692847Z Receiving objects: 76% (154/202) 2024-04-15T15:19:00.4693242Z Receiving objects: 77% (156/202) 2024-04-15T15:19:00.4693596Z Receiving objects: 78% (158/202) 2024-04-15T15:19:00.4705126Z Receiving objects: 79% (160/202) 2024-04-15T15:19:00.4705648Z Receiving objects: 80% (162/202) 2024-04-15T15:19:00.4706126Z Receiving objects: 81% (164/202) 2024-04-15T15:19:00.4706601Z Receiving objects: 82% (166/202) 2024-04-15T15:19:00.4731412Z Receiving objects: 83% (168/202) 2024-04-15T15:19:00.4731999Z Receiving objects: 84% (170/202) 2024-04-15T15:19:00.4732565Z Receiving objects: 85% (172/202) 2024-04-15T15:19:00.4736425Z Receiving objects: 86% (174/202) 2024-04-15T15:19:00.4736970Z Receiving objects: 87% (176/202) 2024-04-15T15:19:00.4737470Z Receiving objects: 88% (178/202) 2024-04-15T15:19:00.4737985Z Receiving objects: 89% (180/202) 2024-04-15T15:19:00.4738506Z Receiving objects: 90% (182/202) 2024-04-15T15:19:00.4739035Z Receiving objects: 91% (184/202) 2024-04-15T15:19:00.4739562Z Receiving objects: 92% (186/202) 2024-04-15T15:19:00.4740067Z Receiving objects: 93% (188/202) 2024-04-15T15:19:00.4740569Z Receiving objects: 94% (190/202) 2024-04-15T15:19:00.4746097Z Receiving objects: 95% (192/202) 2024-04-15T15:19:00.4746920Z Receiving objects: 96% (194/202) 2024-04-15T15:19:00.4747694Z Receiving objects: 97% (196/202) 2024-04-15T15:19:00.4748467Z Receiving objects: 98% (198/202) 2024-04-15T15:19:00.4750181Z remote: Total 202 (delta 44), reused 84 (delta 3), pack-reused 0 2024-04-15T15:19:00.4750980Z Receiving objects: 99% (200/202) 2024-04-15T15:19:00.4751306Z Receiving objects: 100% (202/202) 2024-04-15T15:19:00.4751720Z Receiving objects: 100% (202/202), 2.24 MiB | 12.90 MiB/s, done. 2024-04-15T15:19:00.4752167Z Resolving deltas: 0% (0/44) 2024-04-15T15:19:00.4752480Z Resolving deltas: 2% (1/44) 2024-04-15T15:19:00.4752771Z Resolving deltas: 4% (2/44) 2024-04-15T15:19:00.4753054Z Resolving deltas: 6% (3/44) 2024-04-15T15:19:00.4756845Z Resolving deltas: 9% (4/44) 2024-04-15T15:19:00.4757216Z Resolving deltas: 11% (5/44) 2024-04-15T15:19:00.4757513Z Resolving deltas: 13% (6/44) 2024-04-15T15:19:00.4757881Z Resolving deltas: 15% (7/44) 2024-04-15T15:19:00.4758241Z Resolving deltas: 18% (8/44) 2024-04-15T15:19:00.4758600Z Resolving deltas: 20% (9/44) 2024-04-15T15:19:00.4759006Z Resolving deltas: 22% (10/44) 2024-04-15T15:19:00.4759432Z Resolving deltas: 25% (11/44) 2024-04-15T15:19:00.4759777Z Resolving deltas: 27% (12/44) 2024-04-15T15:19:00.4760061Z Resolving deltas: 29% (13/44) 2024-04-15T15:19:00.4760484Z Resolving deltas: 31% (14/44) 2024-04-15T15:19:00.4760800Z Resolving deltas: 34% (15/44) 2024-04-15T15:19:00.4761091Z Resolving deltas: 36% (16/44) 2024-04-15T15:19:00.4761374Z Resolving deltas: 38% (17/44) 2024-04-15T15:19:00.4761849Z Resolving deltas: 40% (18/44) 2024-04-15T15:19:00.4762154Z Resolving deltas: 43% (19/44) 2024-04-15T15:19:00.4763490Z Resolving deltas: 45% (20/44) 2024-04-15T15:19:00.4764058Z Resolving deltas: 47% (21/44) 2024-04-15T15:19:00.4764577Z Resolving deltas: 50% (22/44) 2024-04-15T15:19:00.4765057Z Resolving deltas: 52% (23/44) 2024-04-15T15:19:00.4765536Z Resolving deltas: 54% (24/44) 2024-04-15T15:19:00.4765990Z Resolving deltas: 56% (25/44) 2024-04-15T15:19:00.4766452Z Resolving deltas: 59% (26/44) 2024-04-15T15:19:00.4766906Z Resolving deltas: 61% (27/44) 2024-04-15T15:19:00.4767353Z Resolving deltas: 63% (28/44) 2024-04-15T15:19:00.4767815Z Resolving deltas: 65% (29/44) 2024-04-15T15:19:00.4768272Z Resolving deltas: 68% (30/44) 2024-04-15T15:19:00.4768728Z Resolving deltas: 70% (31/44) 2024-04-15T15:19:00.4769188Z Resolving deltas: 72% (32/44) 2024-04-15T15:19:00.4769648Z Resolving deltas: 75% (33/44) 2024-04-15T15:19:00.4770092Z Resolving deltas: 77% (34/44) 2024-04-15T15:19:00.4770535Z Resolving deltas: 79% (35/44) 2024-04-15T15:19:00.4770997Z Resolving deltas: 81% (36/44) 2024-04-15T15:19:00.4771433Z Resolving deltas: 84% (37/44) 2024-04-15T15:19:00.4771876Z Resolving deltas: 86% (38/44) 2024-04-15T15:19:00.4772330Z Resolving deltas: 88% (39/44) 2024-04-15T15:19:00.4772789Z Resolving deltas: 90% (40/44) 2024-04-15T15:19:00.4773236Z Resolving deltas: 93% (41/44) 2024-04-15T15:19:00.4773702Z Resolving deltas: 95% (42/44) 2024-04-15T15:19:00.4774143Z Resolving deltas: 97% (43/44) 2024-04-15T15:19:00.4774610Z Resolving deltas: 100% (44/44) 2024-04-15T15:19:00.4775084Z Resolving deltas: 100% (44/44), done. 2024-04-15T15:19:00.4837571Z From https://github.com/PhanstielLab/plotgardener 2024-04-15T15:19:00.4838813Z * [new ref] a161f7b63357ace24fc4953a655d13a7398334e2 -> pull/113/merge 2024-04-15T15:19:00.4863540Z ##[endgroup] 2024-04-15T15:19:00.4864099Z ##[group]Determining the checkout info 2024-04-15T15:19:00.4866194Z ##[endgroup] 2024-04-15T15:19:00.4866839Z ##[group]Checking out the ref 2024-04-15T15:19:00.4870698Z [command]/usr/bin/git checkout --progress --force refs/remotes/pull/113/merge 2024-04-15T15:19:00.5153645Z Note: switching to 'refs/remotes/pull/113/merge'. 2024-04-15T15:19:00.5154189Z 2024-04-15T15:19:00.5154750Z You are in 'detached HEAD' state. You can look around, make experimental 2024-04-15T15:19:00.5155651Z changes and commit them, and you can discard any commits you make in this 2024-04-15T15:19:00.5156260Z state without impacting any branches by switching back to a branch. 2024-04-15T15:19:00.5156610Z 2024-04-15T15:19:00.5156868Z If you want to create a new branch to retain commits you create, you may 2024-04-15T15:19:00.5157538Z do so (now or later) by using -c with the switch command. Example: 2024-04-15T15:19:00.5157893Z 2024-04-15T15:19:00.5158049Z git switch -c 2024-04-15T15:19:00.5158262Z 2024-04-15T15:19:00.5158374Z Or undo this operation with: 2024-04-15T15:19:00.5158566Z 2024-04-15T15:19:00.5158657Z git switch - 2024-04-15T15:19:00.5158820Z 2024-04-15T15:19:00.5159097Z Turn off this advice by setting config variable advice.detachedHead to false 2024-04-15T15:19:00.5159497Z 2024-04-15T15:19:00.5160215Z HEAD is now at a161f7b Merge d6a0baef3a1a91e086891869aca085ebb7f7c4f9 into bbadfbaca43e565b245307d986261849990f0d0e 2024-04-15T15:19:00.5162234Z ##[endgroup] 2024-04-15T15:19:00.5220913Z [command]/usr/bin/git log -1 --format='%H' 2024-04-15T15:19:00.5259701Z 'a161f7b63357ace24fc4953a655d13a7398334e2' 2024-04-15T15:19:00.5467369Z ##[group]Run install.packages('remotes') 2024-04-15T15:19:00.5467777Z install.packages('remotes') 2024-04-15T15:19:00.5468371Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2024-04-15T15:19:00.5470972Z shell: Rscript {0} 2024-04-15T15:19:00.5471234Z env: 2024-04-15T15:19:00.5471441Z has_testthat: false 2024-04-15T15:19:00.5471699Z run_covr: false 2024-04-15T15:19:00.5471933Z run_pkgdown: false 2024-04-15T15:19:00.5472176Z has_RUnit: false 2024-04-15T15:19:00.5472417Z cache-version: cache-v1 2024-04-15T15:19:00.5472679Z run_docker: false 2024-04-15T15:19:00.5472940Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:19:00.5473457Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:19:00.5473921Z NOT_CRAN: true 2024-04-15T15:19:00.5474145Z TZ: UTC 2024-04-15T15:19:00.5474613Z GITHUB_TOKEN: *** 2024-04-15T15:19:00.5474967Z GITHUB_PAT: *** 2024-04-15T15:19:00.5475227Z ##[endgroup] 2024-04-15T15:19:00.8011029Z Installing package into ‘/__w/_temp/Library’ 2024-04-15T15:19:00.8011604Z (as ‘lib’ is unspecified) 2024-04-15T15:19:01.3226564Z trying URL 'https://cloud.r-project.org/src/contrib/remotes_2.5.0.tar.gz' 2024-04-15T15:19:01.3708750Z Content type 'application/x-gzip' length 164496 bytes (160 KB) 2024-04-15T15:19:01.3835961Z ================================================== 2024-04-15T15:19:01.3836638Z downloaded 160 KB 2024-04-15T15:19:01.3836914Z 2024-04-15T15:19:01.6311823Z * installing *source* package ‘remotes’ ... 2024-04-15T15:19:01.6368262Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2024-04-15T15:19:01.6369145Z ** using staged installation 2024-04-15T15:19:01.6545283Z ** R 2024-04-15T15:19:01.6725455Z ** inst 2024-04-15T15:19:01.6740021Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:19:03.3545167Z ** help 2024-04-15T15:19:03.4197243Z *** installing help indices 2024-04-15T15:19:03.4643435Z ** building package indices 2024-04-15T15:19:03.6589331Z ** installing vignettes 2024-04-15T15:19:03.6643671Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:19:03.8366306Z ** testing if installed package can be loaded from final location 2024-04-15T15:19:04.0290783Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:19:04.0315637Z * DONE (remotes) 2024-04-15T15:19:04.0438622Z 2024-04-15T15:19:04.0439284Z The downloaded source packages are in 2024-04-15T15:19:04.0440139Z ‘/tmp/RtmpvRBaEo/downloaded_packages’ 2024-04-15T15:19:06.9021841Z ##[group]Run actions/cache@v2 2024-04-15T15:19:06.9022182Z with: 2024-04-15T15:19:06.9022424Z path: /home/runner/work/_temp/Library 2024-04-15T15:19:06.9023237Z key: cache-v1-Linux-biocversion-devel-r-devel-6efdd6abff11f6e23da0f970f1b0b42de40952a053b43aefe2e9d185de1a30f1 2024-04-15T15:19:06.9024118Z restore-keys: cache-v1-Linux-biocversion-devel-r-devel- 2024-04-15T15:19:06.9024519Z env: 2024-04-15T15:19:06.9024719Z has_testthat: false 2024-04-15T15:19:06.9024971Z run_covr: false 2024-04-15T15:19:06.9025201Z run_pkgdown: false 2024-04-15T15:19:06.9025444Z has_RUnit: false 2024-04-15T15:19:06.9025686Z cache-version: cache-v1 2024-04-15T15:19:06.9025948Z run_docker: false 2024-04-15T15:19:06.9026219Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:19:06.9026720Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:19:06.9027185Z NOT_CRAN: true 2024-04-15T15:19:06.9027399Z TZ: UTC 2024-04-15T15:19:06.9028025Z GITHUB_TOKEN: *** 2024-04-15T15:19:06.9028395Z GITHUB_PAT: *** 2024-04-15T15:19:06.9028633Z ##[endgroup] 2024-04-15T15:19:06.9032159Z ##[command]/usr/bin/docker exec 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 sh -c "cat /etc/*release | grep ^ID" 2024-04-15T15:19:07.2407532Z Cache not found for input keys: cache-v1-Linux-biocversion-devel-r-devel-6efdd6abff11f6e23da0f970f1b0b42de40952a053b43aefe2e9d185de1a30f1, cache-v1-Linux-biocversion-devel-r-devel- 2024-04-15T15:19:07.2534331Z ##[group]Run sysreqs=$(Rscript -e 'cat("apt-get update -y && apt-get install -y", paste(gsub("apt-get install -y ", "", remotes::system_requirements("ubuntu", "20.04")), collapse = " "))') 2024-04-15T15:19:07.2535756Z sysreqs=$(Rscript -e 'cat("apt-get update -y && apt-get install -y", paste(gsub("apt-get install -y ", "", remotes::system_requirements("ubuntu", "20.04")), collapse = " "))') 2024-04-15T15:19:07.2536586Z echo $sysreqs 2024-04-15T15:19:07.2536856Z sudo -s eval "$sysreqs" 2024-04-15T15:19:07.2537929Z shell: sh -e {0} 2024-04-15T15:19:07.2538157Z env: 2024-04-15T15:19:07.2538366Z has_testthat: false 2024-04-15T15:19:07.2538631Z run_covr: false 2024-04-15T15:19:07.2538867Z run_pkgdown: false 2024-04-15T15:19:07.2539111Z has_RUnit: false 2024-04-15T15:19:07.2539352Z cache-version: cache-v1 2024-04-15T15:19:07.2539613Z run_docker: false 2024-04-15T15:19:07.2539892Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:19:07.2540411Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:19:07.2540879Z NOT_CRAN: true 2024-04-15T15:19:07.2541101Z TZ: UTC 2024-04-15T15:19:07.2541542Z GITHUB_TOKEN: *** 2024-04-15T15:19:07.2541936Z GITHUB_PAT: *** 2024-04-15T15:19:07.2542164Z ##[endgroup] 2024-04-15T15:19:07.7787293Z apt-get update -y && apt-get install -y libcurl4-openssl-dev libssl-dev make pandoc libjpeg-dev libpoppler-cpp-dev libpng-dev libfreetype6-dev zlib1g-dev 2024-04-15T15:19:08.0228760Z Get:1 http://archive.ubuntu.com/ubuntu jammy InRelease [270 kB] 2024-04-15T15:19:08.0230248Z Get:2 http://security.ubuntu.com/ubuntu jammy-security InRelease [110 kB] 2024-04-15T15:19:08.0975458Z Get:3 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] 2024-04-15T15:19:08.1194387Z Get:4 http://archive.ubuntu.com/ubuntu jammy-backports InRelease [109 kB] 2024-04-15T15:19:08.2558986Z Get:5 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [1,083 kB] 2024-04-15T15:19:08.3370399Z Get:6 http://security.ubuntu.com/ubuntu jammy-security/multiverse amd64 Packages [44.7 kB] 2024-04-15T15:19:08.3372747Z Get:7 http://security.ubuntu.com/ubuntu jammy-security/main amd64 Packages [1,691 kB] 2024-04-15T15:19:08.3510551Z Get:8 http://archive.ubuntu.com/ubuntu jammy/restricted amd64 Packages [164 kB] 2024-04-15T15:19:08.3600837Z Get:9 http://security.ubuntu.com/ubuntu jammy-security/restricted amd64 Packages [2,135 kB] 2024-04-15T15:19:08.3770453Z Get:10 http://archive.ubuntu.com/ubuntu jammy/main amd64 Packages [1,792 kB] 2024-04-15T15:19:08.4307615Z Get:11 http://archive.ubuntu.com/ubuntu jammy/universe amd64 Packages [17.5 MB] 2024-04-15T15:19:08.5467013Z Get:12 http://archive.ubuntu.com/ubuntu jammy/multiverse amd64 Packages [266 kB] 2024-04-15T15:19:08.5482341Z Get:13 http://archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [2,176 kB] 2024-04-15T15:19:08.5601124Z Get:14 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1,375 kB] 2024-04-15T15:19:08.5686965Z Get:15 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1,974 kB] 2024-04-15T15:19:08.5797372Z Get:16 http://archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 Packages [61.3 kB] 2024-04-15T15:19:08.5801447Z Get:17 http://archive.ubuntu.com/ubuntu jammy-backports/main amd64 Packages [80.9 kB] 2024-04-15T15:19:08.5807891Z Get:18 http://archive.ubuntu.com/ubuntu jammy-backports/universe amd64 Packages [33.3 kB] 2024-04-15T15:19:09.3537197Z Fetched 31.0 MB in 1s (22.2 MB/s) 2024-04-15T15:19:10.0199371Z Reading package lists... 2024-04-15T15:19:10.7199301Z Reading package lists... 2024-04-15T15:19:10.8926168Z Building dependency tree... 2024-04-15T15:19:10.8933609Z Reading state information... 2024-04-15T15:19:11.0247224Z libjpeg-dev is already the newest version (8c-2ubuntu10). 2024-04-15T15:19:11.0248523Z libpng-dev is already the newest version (1.6.37-3build5). 2024-04-15T15:19:11.0249680Z make is already the newest version (4.3-4.1build1). 2024-04-15T15:19:11.0251725Z libfreetype6-dev is already the newest version (2.11.1+dfsg-1ubuntu0.2). 2024-04-15T15:19:11.0253207Z libfreetype6-dev set to manually installed. 2024-04-15T15:19:11.0254492Z libpoppler-cpp-dev is already the newest version (22.02.0-2ubuntu0.3). 2024-04-15T15:19:11.0255708Z libssl-dev is already the newest version (3.0.2-0ubuntu1.15). 2024-04-15T15:19:11.0256582Z zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu9.2). 2024-04-15T15:19:11.0257330Z The following packages were automatically installed and are no longer required: 2024-04-15T15:19:11.0258172Z libmhash2 libraptor2-0 librasqal3 librdf0 libxslt1-dev libyajl-dev libyajl2 2024-04-15T15:19:11.0258832Z Use 'sudo apt autoremove' to remove them. 2024-04-15T15:19:11.0259621Z The following additional packages will be installed: 2024-04-15T15:19:11.0260903Z libcmark-gfm-extensions0.29.0.gfm.3 libcmark-gfm0.29.0.gfm.3 pandoc-data 2024-04-15T15:19:11.0266566Z Suggested packages: 2024-04-15T15:19:11.0267378Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev texlive-latex-recommended 2024-04-15T15:19:11.0268121Z texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context 2024-04-15T15:19:11.0268821Z wkhtmltopdf librsvg2-bin groff ghc nodejs php python ruby r-base-core 2024-04-15T15:19:11.0269418Z libjs-mathjax libjs-katex citation-style-language-styles 2024-04-15T15:19:11.0805760Z The following packages will be REMOVED: 2024-04-15T15:19:11.0816159Z libcurl4-gnutls-dev libraptor2-dev librasqal3-dev librdf0-dev 2024-04-15T15:19:11.0817683Z The following NEW packages will be installed: 2024-04-15T15:19:11.0818658Z libcmark-gfm-extensions0.29.0.gfm.3 libcmark-gfm0.29.0.gfm.3 2024-04-15T15:19:11.0823404Z libcurl4-openssl-dev pandoc pandoc-data 2024-04-15T15:19:11.1306106Z 0 upgraded, 5 newly installed, 4 to remove and 7 not upgraded. 2024-04-15T15:19:11.1306996Z Need to get 20.9 MB of archives. 2024-04-15T15:19:11.1307470Z After this operation, 152 MB of additional disk space will be used. 2024-04-15T15:19:11.1308674Z Get:1 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 libcurl4-openssl-dev amd64 7.81.0-1ubuntu1.16 [386 kB] 2024-04-15T15:19:11.2321840Z Get:2 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libcmark-gfm0.29.0.gfm.3 amd64 0.29.0.gfm.3-3 [115 kB] 2024-04-15T15:19:11.2354339Z Get:3 http://archive.ubuntu.com/ubuntu jammy/universe amd64 libcmark-gfm-extensions0.29.0.gfm.3 amd64 0.29.0.gfm.3-3 [25.1 kB] 2024-04-15T15:19:11.2361517Z Get:4 http://archive.ubuntu.com/ubuntu jammy/universe amd64 pandoc-data all 2.9.2.1-3ubuntu2 [81.8 kB] 2024-04-15T15:19:11.2382724Z Get:5 http://archive.ubuntu.com/ubuntu jammy/universe amd64 pandoc amd64 2.9.2.1-3ubuntu2 [20.3 MB] 2024-04-15T15:19:11.9144933Z debconf: unable to initialize frontend: Dialog 2024-04-15T15:19:11.9146081Z debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) 2024-04-15T15:19:11.9146909Z debconf: falling back to frontend: Readline 2024-04-15T15:19:11.9214610Z debconf: unable to initialize frontend: Readline 2024-04-15T15:19:11.9215403Z debconf: (This frontend requires a controlling tty.) 2024-04-15T15:19:11.9216128Z debconf: falling back to frontend: Teletype 2024-04-15T15:19:11.9256277Z dpkg-preconfigure: unable to re-open stdin: 2024-04-15T15:19:12.0106543Z Fetched 20.9 MB in 0s (66.8 MB/s) 2024-04-15T15:19:12.0416882Z (Reading database ... 2024-04-15T15:19:12.0417537Z (Reading database ... 5% 2024-04-15T15:19:12.0418095Z (Reading database ... 10% 2024-04-15T15:19:12.0418664Z (Reading database ... 15% 2024-04-15T15:19:12.0419205Z (Reading database ... 20% 2024-04-15T15:19:12.0419734Z (Reading database ... 25% 2024-04-15T15:19:12.0420263Z (Reading database ... 30% 2024-04-15T15:19:12.0421117Z (Reading database ... 35% 2024-04-15T15:19:12.0421433Z (Reading database ... 40% 2024-04-15T15:19:12.0421751Z (Reading database ... 45% 2024-04-15T15:19:12.0449525Z (Reading database ... 50% 2024-04-15T15:19:12.0477292Z (Reading database ... 55% 2024-04-15T15:19:12.0502566Z (Reading database ... 60% 2024-04-15T15:19:12.0527775Z (Reading database ... 65% 2024-04-15T15:19:12.0550474Z (Reading database ... 70% 2024-04-15T15:19:12.0575435Z (Reading database ... 75% 2024-04-15T15:19:12.0640255Z (Reading database ... 80% 2024-04-15T15:19:12.0725086Z (Reading database ... 85% 2024-04-15T15:19:12.0749965Z (Reading database ... 90% 2024-04-15T15:19:12.2891527Z (Reading database ... 95% 2024-04-15T15:19:12.2892254Z (Reading database ... 100% 2024-04-15T15:19:12.2893164Z (Reading database ... 92829 files and directories currently installed.) 2024-04-15T15:19:12.2917876Z Removing librdf0-dev (1.0.17-1.1ubuntu3) ... 2024-04-15T15:19:12.3659227Z dpkg: libcurl4-gnutls-dev:amd64: dependency problems, but removing anyway as you requested: 2024-04-15T15:19:12.3660335Z libraptor2-dev depends on libcurl4-gnutls-dev. 2024-04-15T15:19:12.3661026Z libproj-dev:amd64 depends on libcurl4-gnutls-dev | libcurl-ssl-dev; however: 2024-04-15T15:19:12.3661750Z Package libcurl4-gnutls-dev:amd64 is to be removed. 2024-04-15T15:19:12.3662265Z Package libcurl-ssl-dev is not installed. 2024-04-15T15:19:12.3662968Z Package libcurl4-gnutls-dev:amd64 which provides libcurl-ssl-dev is to be removed. 2024-04-15T15:19:12.3663807Z libnetcdf-dev depends on libcurl4-gnutls-dev | libcurl-ssl-dev; however: 2024-04-15T15:19:12.3664458Z Package libcurl4-gnutls-dev:amd64 is to be removed. 2024-04-15T15:19:12.3664962Z Package libcurl-ssl-dev is not installed. 2024-04-15T15:19:12.3665642Z Package libcurl4-gnutls-dev:amd64 which provides libcurl-ssl-dev is to be removed. 2024-04-15T15:19:12.3666462Z libgdal-dev depends on libcurl4-gnutls-dev | libcurl-ssl-dev; however: 2024-04-15T15:19:12.3667100Z Package libcurl4-gnutls-dev:amd64 is to be removed. 2024-04-15T15:19:12.3667608Z Package libcurl-ssl-dev is not installed. 2024-04-15T15:19:12.3668289Z Package libcurl4-gnutls-dev:amd64 which provides libcurl-ssl-dev is to be removed. 2024-04-15T15:19:12.3669083Z libhdf5-dev depends on libcurl4-openssl-dev | libcurl-dev; however: 2024-04-15T15:19:12.3669923Z Package libcurl4-openssl-dev is not installed. 2024-04-15T15:19:12.3670382Z Package libcurl-dev is not installed. 2024-04-15T15:19:12.3670932Z Package libcurl4-gnutls-dev:amd64 which provides libcurl-dev is to be removed. 2024-04-15T15:19:12.3671648Z libproj-dev:amd64 depends on libcurl4-gnutls-dev | libcurl-ssl-dev; however: 2024-04-15T15:19:12.3672234Z Package libcurl4-gnutls-dev:amd64 is to be removed. 2024-04-15T15:19:12.3672667Z Package libcurl-ssl-dev is not installed. 2024-04-15T15:19:12.3673255Z Package libcurl4-gnutls-dev:amd64 which provides libcurl-ssl-dev is to be removed. 2024-04-15T15:19:12.3673964Z libnetcdf-dev depends on libcurl4-gnutls-dev | libcurl-ssl-dev; however: 2024-04-15T15:19:12.3674537Z Package libcurl4-gnutls-dev:amd64 is to be removed. 2024-04-15T15:19:12.3674967Z Package libcurl-ssl-dev is not installed. 2024-04-15T15:19:12.3675551Z Package libcurl4-gnutls-dev:amd64 which provides libcurl-ssl-dev is to be removed. 2024-04-15T15:19:12.3676252Z libgdal-dev depends on libcurl4-gnutls-dev | libcurl-ssl-dev; however: 2024-04-15T15:19:12.3676797Z Package libcurl4-gnutls-dev:amd64 is to be removed. 2024-04-15T15:19:12.3677236Z Package libcurl-ssl-dev is not installed. 2024-04-15T15:19:12.3677816Z Package libcurl4-gnutls-dev:amd64 which provides libcurl-ssl-dev is to be removed. 2024-04-15T15:19:12.3678224Z 2024-04-15T15:19:12.3686863Z Removing libcurl4-gnutls-dev:amd64 (7.81.0-1ubuntu1.16) ... 2024-04-15T15:19:12.3840157Z dpkg: libraptor2-dev: dependency problems, but removing anyway as you requested: 2024-04-15T15:19:12.3841418Z librasqal3-dev depends on libraptor2-dev (>= 2.0.12-2). 2024-04-15T15:19:12.3841968Z 2024-04-15T15:19:12.3867480Z Removing libraptor2-dev (2.0.15-0ubuntu4) ... 2024-04-15T15:19:12.4709060Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2024-04-15T15:19:12.4801095Z (Reading database ... 2024-04-15T15:19:12.4801729Z (Reading database ... 5% 2024-04-15T15:19:12.4802200Z (Reading database ... 10% 2024-04-15T15:19:12.4803011Z (Reading database ... 15% 2024-04-15T15:19:12.4803484Z (Reading database ... 20% 2024-04-15T15:19:12.4803941Z (Reading database ... 25% 2024-04-15T15:19:12.4804389Z (Reading database ... 30% 2024-04-15T15:19:12.4804834Z (Reading database ... 35% 2024-04-15T15:19:12.4805282Z (Reading database ... 40% 2024-04-15T15:19:12.4805731Z (Reading database ... 45% 2024-04-15T15:19:12.4818839Z (Reading database ... 50% 2024-04-15T15:19:12.4859873Z (Reading database ... 55% 2024-04-15T15:19:12.4883871Z (Reading database ... 60% 2024-04-15T15:19:12.4907304Z (Reading database ... 65% 2024-04-15T15:19:12.4928804Z (Reading database ... 70% 2024-04-15T15:19:12.4952815Z (Reading database ... 75% 2024-04-15T15:19:12.5014495Z (Reading database ... 80% 2024-04-15T15:19:12.5096154Z (Reading database ... 85% 2024-04-15T15:19:12.5120085Z (Reading database ... 90% 2024-04-15T15:19:12.5153028Z (Reading database ... 95% 2024-04-15T15:19:12.5153450Z (Reading database ... 100% 2024-04-15T15:19:12.5154097Z (Reading database ... 92686 files and directories currently installed.) 2024-04-15T15:19:12.5176068Z Preparing to unpack .../libcurl4-openssl-dev_7.81.0-1ubuntu1.16_amd64.deb ... 2024-04-15T15:19:12.5187796Z Unpacking libcurl4-openssl-dev:amd64 (7.81.0-1ubuntu1.16) ... 2024-04-15T15:19:12.5755109Z (Reading database ... 2024-04-15T15:19:12.5755773Z (Reading database ... 5% 2024-04-15T15:19:12.5756210Z (Reading database ... 10% 2024-04-15T15:19:12.5756538Z (Reading database ... 15% 2024-04-15T15:19:12.5756868Z (Reading database ... 20% 2024-04-15T15:19:12.5757188Z (Reading database ... 25% 2024-04-15T15:19:12.5757494Z (Reading database ... 30% 2024-04-15T15:19:12.5757810Z (Reading database ... 35% 2024-04-15T15:19:12.5758146Z (Reading database ... 40% 2024-04-15T15:19:12.5758453Z (Reading database ... 45% 2024-04-15T15:19:12.5782969Z (Reading database ... 50% 2024-04-15T15:19:12.5807334Z (Reading database ... 55% 2024-04-15T15:19:12.5831537Z (Reading database ... 60% 2024-04-15T15:19:12.5855341Z (Reading database ... 65% 2024-04-15T15:19:12.5876994Z (Reading database ... 70% 2024-04-15T15:19:12.5901009Z (Reading database ... 75% 2024-04-15T15:19:12.5960709Z (Reading database ... 80% 2024-04-15T15:19:12.6038209Z (Reading database ... 85% 2024-04-15T15:19:12.6061185Z (Reading database ... 90% 2024-04-15T15:19:12.6092068Z (Reading database ... 95% 2024-04-15T15:19:12.6092544Z (Reading database ... 100% 2024-04-15T15:19:12.6093088Z (Reading database ... 92707 files and directories currently installed.) 2024-04-15T15:19:12.6113291Z Removing librasqal3-dev (0.9.33-0.2ubuntu1) ... 2024-04-15T15:19:12.6589018Z Selecting previously unselected package libcmark-gfm0.29.0.gfm.3:amd64. 2024-04-15T15:19:12.6681503Z (Reading database ... 2024-04-15T15:19:12.6681888Z (Reading database ... 5% 2024-04-15T15:19:12.6682202Z (Reading database ... 10% 2024-04-15T15:19:12.6682508Z (Reading database ... 15% 2024-04-15T15:19:12.6682802Z (Reading database ... 20% 2024-04-15T15:19:12.6683095Z (Reading database ... 25% 2024-04-15T15:19:12.6683399Z (Reading database ... 30% 2024-04-15T15:19:12.6683683Z (Reading database ... 35% 2024-04-15T15:19:12.6683977Z (Reading database ... 40% 2024-04-15T15:19:12.6684268Z (Reading database ... 45% 2024-04-15T15:19:12.6716869Z (Reading database ... 50% 2024-04-15T15:19:12.6739344Z (Reading database ... 55% 2024-04-15T15:19:12.6765690Z (Reading database ... 60% 2024-04-15T15:19:12.6791476Z (Reading database ... 65% 2024-04-15T15:19:12.6814480Z (Reading database ... 70% 2024-04-15T15:19:12.6841732Z (Reading database ... 75% 2024-04-15T15:19:12.6906544Z (Reading database ... 80% 2024-04-15T15:19:12.6998841Z (Reading database ... 85% 2024-04-15T15:19:12.7023562Z (Reading database ... 90% 2024-04-15T15:19:12.7056284Z (Reading database ... 95% 2024-04-15T15:19:12.7056739Z (Reading database ... 100% 2024-04-15T15:19:12.7057375Z (Reading database ... 92691 files and directories currently installed.) 2024-04-15T15:19:12.7083315Z Preparing to unpack .../libcmark-gfm0.29.0.gfm.3_0.29.0.gfm.3-3_amd64.deb ... 2024-04-15T15:19:12.7145605Z Unpacking libcmark-gfm0.29.0.gfm.3:amd64 (0.29.0.gfm.3-3) ... 2024-04-15T15:19:12.7415054Z Selecting previously unselected package libcmark-gfm-extensions0.29.0.gfm.3:amd64. 2024-04-15T15:19:12.7476778Z Preparing to unpack .../libcmark-gfm-extensions0.29.0.gfm.3_0.29.0.gfm.3-3_amd64.deb ... 2024-04-15T15:19:12.7489148Z Unpacking libcmark-gfm-extensions0.29.0.gfm.3:amd64 (0.29.0.gfm.3-3) ... 2024-04-15T15:19:12.7697463Z Selecting previously unselected package pandoc-data. 2024-04-15T15:19:12.7758121Z Preparing to unpack .../pandoc-data_2.9.2.1-3ubuntu2_all.deb ... 2024-04-15T15:19:12.7769791Z Unpacking pandoc-data (2.9.2.1-3ubuntu2) ... 2024-04-15T15:19:12.8269056Z Selecting previously unselected package pandoc. 2024-04-15T15:19:12.8330966Z Preparing to unpack .../pandoc_2.9.2.1-3ubuntu2_amd64.deb ... 2024-04-15T15:19:12.8343809Z Unpacking pandoc (2.9.2.1-3ubuntu2) ... 2024-04-15T15:19:13.3286681Z Setting up libcurl4-openssl-dev:amd64 (7.81.0-1ubuntu1.16) ... 2024-04-15T15:19:13.3320238Z Setting up libcmark-gfm0.29.0.gfm.3:amd64 (0.29.0.gfm.3-3) ... 2024-04-15T15:19:13.3353857Z Setting up libcmark-gfm-extensions0.29.0.gfm.3:amd64 (0.29.0.gfm.3-3) ... 2024-04-15T15:19:13.3380565Z Setting up pandoc-data (2.9.2.1-3ubuntu2) ... 2024-04-15T15:19:13.3410398Z Setting up pandoc (2.9.2.1-3ubuntu2) ... 2024-04-15T15:19:13.3450063Z Processing triggers for libc-bin (2.35-0ubuntu3.6) ... 2024-04-15T15:19:13.6152312Z ##[group]Run message(paste('****', Sys.time(), 'installing BiocManager ****')) 2024-04-15T15:19:13.6152984Z message(paste('****', Sys.time(), 'installing BiocManager ****')) 2024-04-15T15:19:13.6153467Z remotes::install_cran("BiocManager") 2024-04-15T15:19:13.6153874Z shell: Rscript {0} 2024-04-15T15:19:13.6154113Z env: 2024-04-15T15:19:13.6154306Z has_testthat: false 2024-04-15T15:19:13.6154551Z run_covr: false 2024-04-15T15:19:13.6154774Z run_pkgdown: false 2024-04-15T15:19:13.6155004Z has_RUnit: false 2024-04-15T15:19:13.6155236Z cache-version: cache-v1 2024-04-15T15:19:13.6155491Z run_docker: false 2024-04-15T15:19:13.6155744Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:19:13.6156219Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:19:13.6156664Z NOT_CRAN: true 2024-04-15T15:19:13.6156872Z TZ: UTC 2024-04-15T15:19:13.6157324Z GITHUB_TOKEN: *** 2024-04-15T15:19:13.6157800Z GITHUB_PAT: *** 2024-04-15T15:19:13.6158038Z ##[endgroup] 2024-04-15T15:19:13.8575346Z **** 2024-04-15 15:19:13.856292 installing BiocManager **** 2024-04-15T15:19:14.2398335Z Skipping install of 'BiocManager' from a cran remote, the SHA1 (1.30.22) has not changed since last install. 2024-04-15T15:19:14.2399758Z Use `force = TRUE` to force installation 2024-04-15T15:19:14.2552746Z ##[group]Run BiocManager::install(version = "3.19", ask = FALSE, force = TRUE) 2024-04-15T15:19:14.2553422Z BiocManager::install(version = "3.19", ask = FALSE, force = TRUE) 2024-04-15T15:19:14.2553943Z shell: Rscript {0} 2024-04-15T15:19:14.2554175Z env: 2024-04-15T15:19:14.2554375Z has_testthat: false 2024-04-15T15:19:14.2554617Z run_covr: false 2024-04-15T15:19:14.2554847Z run_pkgdown: false 2024-04-15T15:19:14.2555087Z has_RUnit: false 2024-04-15T15:19:14.2555319Z cache-version: cache-v1 2024-04-15T15:19:14.2555585Z run_docker: false 2024-04-15T15:19:14.2555851Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:19:14.2556332Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:19:14.2556790Z NOT_CRAN: true 2024-04-15T15:19:14.2557015Z TZ: UTC 2024-04-15T15:19:14.2557382Z GITHUB_TOKEN: *** 2024-04-15T15:19:14.2557724Z GITHUB_PAT: *** 2024-04-15T15:19:14.2557955Z ##[endgroup] 2024-04-15T15:19:15.3188179Z 'getOption("repos")' replaces Bioconductor standard repositories, see 2024-04-15T15:19:15.3189515Z 'help("repositories", package = "BiocManager")' for details. 2024-04-15T15:19:15.3190757Z Replacement repositories: 2024-04-15T15:19:15.3191521Z CRAN: https://cloud.r-project.org 2024-04-15T15:19:18.2605741Z Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable) 2024-04-15T15:19:18.2606865Z (2024-04-10 r86396) 2024-04-15T15:19:19.1171853Z Old packages: 'testthat' 2024-04-15T15:19:19.8458978Z trying URL 'https://cloud.r-project.org/src/contrib/testthat_3.2.1.1.tar.gz' 2024-04-15T15:19:19.8942709Z Content type 'application/x-gzip' length 739761 bytes (722 KB) 2024-04-15T15:19:19.9220887Z ================================================== 2024-04-15T15:19:19.9221553Z downloaded 722 KB 2024-04-15T15:19:19.9221830Z 2024-04-15T15:19:20.3799344Z * installing *source* package ‘testthat’ ... 2024-04-15T15:19:20.3982951Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2024-04-15T15:19:20.4013320Z ** using staged installation 2024-04-15T15:19:20.4183977Z ** libs 2024-04-15T15:19:20.4301995Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:19:20.4325196Z using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:19:20.4350804Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o 2024-04-15T15:19:20.4749441Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reassign.c -o reassign.o 2024-04-15T15:19:20.5171694Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-catch.cpp -o test-catch.o 2024-04-15T15:19:21.2430108Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-example.cpp -o test-example.o 2024-04-15T15:19:21.8590509Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-runner.cpp -o test-runner.o 2024-04-15T15:19:31.6738091Z g++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:19:31.7811859Z installing to /usr/local/lib/R/site-library/00LOCK-testthat/00new/testthat/libs 2024-04-15T15:19:31.7877326Z ** R 2024-04-15T15:19:31.8238017Z ** inst 2024-04-15T15:19:31.8295700Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:19:40.5206113Z ** help 2024-04-15T15:19:40.6979290Z *** installing help indices 2024-04-15T15:19:40.8444605Z *** copying figures 2024-04-15T15:19:40.8454379Z ** building package indices 2024-04-15T15:19:41.1045316Z ** installing vignettes 2024-04-15T15:19:41.1117038Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:19:41.3733975Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:19:41.4022038Z ** testing if installed package can be loaded from final location 2024-04-15T15:19:41.8931582Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:19:41.9021487Z * DONE (testthat) 2024-04-15T15:19:41.9357124Z 2024-04-15T15:19:41.9359291Z The downloaded source packages are in 2024-04-15T15:19:41.9360532Z ‘/tmp/Rtmpwa13Ge/downloaded_packages’ 2024-04-15T15:19:41.9560805Z ##[group]Run ## Try installing the package dependencies in steps. First the local 2024-04-15T15:19:41.9561788Z ## Try installing the package dependencies in steps. First the local 2024-04-15T15:19:41.9562401Z ## dependencies, then any remaining dependencies to avoid the 2024-04-15T15:19:41.9562853Z ## issues described at 2024-04-15T15:19:41.9563321Z ## https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016675.html 2024-04-15T15:19:41.9563854Z ## https://github.com/r-lib/remotes/issues/296 2024-04-15T15:19:41.9564386Z ## Ideally, all dependencies should get installed in the first pass. 2024-04-15T15:19:41.9564840Z  2024-04-15T15:19:41.9565106Z ## Set the repos source depending on the OS 2024-04-15T15:19:41.9565691Z ## Alternatively use https://storage.googleapis.com/bioconductor_docker/packages/ 2024-04-15T15:19:41.9566400Z ## though based on https://bit.ly/bioc2021-package-binaries 2024-04-15T15:19:41.9566924Z ## the Azure link will be the main one going forward. 2024-04-15T15:19:41.9567335Z gha_repos <- if( 2024-04-15T15:19:41.9567745Z  .Platform$OS.type == "unix" && Sys.info()["sysname"] != "Darwin" 2024-04-15T15:19:41.9568179Z ) c( 2024-04-15T15:19:41.9568638Z  "AnVIL" = "https://bioconductordocker.blob.core.windows.net/packages/3.19/bioc", 2024-04-15T15:19:41.9569207Z  BiocManager::repositories() 2024-04-15T15:19:41.9569566Z  ) else BiocManager::repositories() 2024-04-15T15:19:41.9569902Z  2024-04-15T15:19:41.9570122Z ## For running the checks 2024-04-15T15:19:41.9570612Z message(paste('****', Sys.time(), 'installing rcmdcheck and BiocCheck ****')) 2024-04-15T15:19:41.9571243Z install.packages(c("rcmdcheck", "BiocCheck"), repos = gha_repos) 2024-04-15T15:19:41.9571686Z  2024-04-15T15:19:41.9571943Z ## Pass #1 at installing dependencies 2024-04-15T15:19:41.9572404Z ## This pass uses AnVIL-powered fast binaries 2024-04-15T15:19:41.9572959Z ## details at https://github.com/nturaga/bioc2021-bioconductor-binaries 2024-04-15T15:19:41.9573534Z ## The speed gains only apply to the docker builds. 2024-04-15T15:19:41.9574190Z message(paste('****', Sys.time(), 'pass number 1 at installing dependencies: local dependencies ****')) 2024-04-15T15:19:41.9575064Z remotes::install_local(dependencies = TRUE, repos = gha_repos, build_vignettes = FALSE, upgrade = TRUE) 2024-04-15T15:19:41.9575727Z shell: Rscript {0} 2024-04-15T15:19:41.9575956Z env: 2024-04-15T15:19:41.9576151Z has_testthat: false 2024-04-15T15:19:41.9576396Z run_covr: false 2024-04-15T15:19:41.9576619Z run_pkgdown: false 2024-04-15T15:19:41.9576858Z has_RUnit: false 2024-04-15T15:19:41.9577094Z cache-version: cache-v1 2024-04-15T15:19:41.9577349Z run_docker: false 2024-04-15T15:19:41.9577619Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:19:41.9578100Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:19:41.9578554Z NOT_CRAN: true 2024-04-15T15:19:41.9578767Z TZ: UTC 2024-04-15T15:19:41.9579127Z GITHUB_TOKEN: *** 2024-04-15T15:19:41.9579464Z GITHUB_PAT: *** 2024-04-15T15:19:41.9579688Z ##[endgroup] 2024-04-15T15:19:42.7922219Z 'getOption("repos")' replaces Bioconductor standard repositories, see 2024-04-15T15:19:42.7923107Z 'help("repositories", package = "BiocManager")' for details. 2024-04-15T15:19:42.7923630Z Replacement repositories: 2024-04-15T15:19:42.7924066Z CRAN: https://cloud.r-project.org 2024-04-15T15:19:43.0062268Z **** 2024-04-15 15:19:43.005423 installing rcmdcheck and BiocCheck **** 2024-04-15T15:19:43.0081073Z Installing packages into ‘/__w/_temp/Library’ 2024-04-15T15:19:43.0081845Z (as ‘lib’ is unspecified) 2024-04-15T15:19:43.5130060Z Warning: unable to access index for repository https://bioconductordocker.blob.core.windows.net/packages/3.19/bioc/src/contrib: 2024-04-15T15:19:43.5131651Z cannot open URL 'https://bioconductordocker.blob.core.windows.net/packages/3.19/bioc/src/contrib/PACKAGES' 2024-04-15T15:19:45.8152610Z also installing the dependencies ‘bit’, ‘blob’, ‘tidyr’, ‘tidyselect’, ‘generics’, ‘bit64’, ‘plogr’, ‘BH’, ‘bitops’, ‘dbplyr’, ‘dplyr’, ‘RSQLite’, ‘DBI’, ‘filelock’, ‘Biobase’, ‘RBGL’, ‘XML’, ‘RCurl’, ‘RUnit’, ‘BiocGenerics’, ‘selectr’, ‘BiocBaseUtils’, ‘BiocFileCache’, ‘biocViews’, ‘graph’, ‘rvest’, ‘stringdist’ 2024-04-15T15:19:45.8154393Z 2024-04-15T15:19:45.8162312Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/bit_4.0.5_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:46.3221120Z Content type 'application/gzip' length 1264737 bytes (1.2 MB) 2024-04-15T15:19:46.3590473Z ================================================== 2024-04-15T15:19:46.3591153Z downloaded 1.2 MB 2024-04-15T15:19:46.3591354Z 2024-04-15T15:19:46.3626716Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/blob_1.2.4_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:46.6124112Z Content type 'application/gzip' length 47735 bytes (46 KB) 2024-04-15T15:19:46.6195091Z ================================================== 2024-04-15T15:19:46.6195693Z downloaded 46 KB 2024-04-15T15:19:46.6199119Z 2024-04-15T15:19:46.6230257Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/tidyr_1.3.1_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:46.7817372Z Content type 'application/gzip' length 1402435 bytes (1.3 MB) 2024-04-15T15:19:46.8159916Z ================================================== 2024-04-15T15:19:46.8160549Z downloaded 1.3 MB 2024-04-15T15:19:46.8160811Z 2024-04-15T15:19:46.8194237Z trying URL 'https://cloud.r-project.org/src/contrib/tidyselect_1.2.1.tar.gz' 2024-04-15T15:19:46.8694959Z Content type 'application/x-gzip' length 103591 bytes (101 KB) 2024-04-15T15:19:46.8796376Z ================================================== 2024-04-15T15:19:46.8796991Z downloaded 101 KB 2024-04-15T15:19:46.8797290Z 2024-04-15T15:19:46.8821755Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/generics_0.1.3_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:47.1674132Z Content type 'application/gzip' length 82889 bytes (80 KB) 2024-04-15T15:19:47.1781290Z ================================================== 2024-04-15T15:19:47.1781958Z downloaded 80 KB 2024-04-15T15:19:47.1782227Z 2024-04-15T15:19:47.1819868Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/bit64_4.0.5_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:47.6593055Z Content type 'application/gzip' length 587513 bytes (573 KB) 2024-04-15T15:19:47.6882930Z ================================================== 2024-04-15T15:19:47.6883627Z downloaded 573 KB 2024-04-15T15:19:47.6883928Z 2024-04-15T15:19:47.6919896Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/plogr_0.2.0_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:47.9931788Z Content type 'application/gzip' length 13105 bytes (12 KB) 2024-04-15T15:19:47.9934907Z ================================================== 2024-04-15T15:19:47.9935748Z downloaded 12 KB 2024-04-15T15:19:47.9936051Z 2024-04-15T15:19:47.9970976Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/BH_1.84.0-0_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:48.5028921Z Content type 'application/gzip' length 13029062 bytes (12.4 MB) 2024-04-15T15:19:48.6262824Z ================================================== 2024-04-15T15:19:48.6263516Z downloaded 12.4 MB 2024-04-15T15:19:48.6263703Z 2024-04-15T15:19:48.6299052Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/bitops_1.0-7_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:48.8537610Z Content type 'application/gzip' length 32994 bytes (32 KB) 2024-04-15T15:19:48.8595947Z ================================================== 2024-04-15T15:19:48.8596882Z downloaded 32 KB 2024-04-15T15:19:48.8597087Z 2024-04-15T15:19:48.8632183Z trying URL 'https://cloud.r-project.org/src/contrib/dbplyr_2.5.0.tar.gz' 2024-04-15T15:19:48.9117679Z Content type 'application/x-gzip' length 770647 bytes (752 KB) 2024-04-15T15:19:48.9374098Z ================================================== 2024-04-15T15:19:48.9374707Z downloaded 752 KB 2024-04-15T15:19:48.9374981Z 2024-04-15T15:19:48.9400176Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/dplyr_1.1.4_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:49.4463815Z Content type 'application/gzip' length 1603661 bytes (1.5 MB) 2024-04-15T15:19:49.4889512Z ================================================== 2024-04-15T15:19:49.4890158Z downloaded 1.5 MB 2024-04-15T15:19:49.4890417Z 2024-04-15T15:19:49.4925063Z trying URL 'https://cloud.r-project.org/src/contrib/RSQLite_2.3.6.tar.gz' 2024-04-15T15:19:49.5437236Z Content type 'application/x-gzip' length 4249332 bytes (4.1 MB) 2024-04-15T15:19:49.5862399Z ================================================== 2024-04-15T15:19:49.5862989Z downloaded 4.1 MB 2024-04-15T15:19:49.5863366Z 2024-04-15T15:19:49.5888964Z trying URL 'https://cloud.r-project.org/src/contrib/DBI_1.2.2.tar.gz' 2024-04-15T15:19:49.6424011Z Content type 'application/x-gzip' length 1132818 bytes (1.1 MB) 2024-04-15T15:19:49.6709247Z ================================================== 2024-04-15T15:19:49.6710031Z downloaded 1.1 MB 2024-04-15T15:19:49.6710265Z 2024-04-15T15:19:49.6735469Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/filelock_1.0.3_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:50.0260214Z Content type 'application/gzip' length 33592 bytes (32 KB) 2024-04-15T15:19:50.0317878Z ================================================== 2024-04-15T15:19:50.0318630Z downloaded 32 KB 2024-04-15T15:19:50.0318955Z 2024-04-15T15:19:50.0355906Z trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/Biobase_2.63.1.tar.gz' 2024-04-15T15:19:50.2896473Z Content type 'application/x-gzip' length 1796047 bytes (1.7 MB) 2024-04-15T15:19:50.3261542Z ================================================== 2024-04-15T15:19:50.3262189Z downloaded 1.7 MB 2024-04-15T15:19:50.3262360Z 2024-04-15T15:19:50.3289324Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/RBGL_1.79.0_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:50.8351141Z Content type 'application/gzip' length 10365512 bytes (9.9 MB) 2024-04-15T15:19:50.9171490Z ================================================== 2024-04-15T15:19:50.9172191Z downloaded 9.9 MB 2024-04-15T15:19:50.9172460Z 2024-04-15T15:19:50.9207246Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/XML_3.99-0.16.1_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:51.6306009Z Content type 'application/gzip' length 1984875 bytes (1.9 MB) 2024-04-15T15:19:51.6799077Z ================================================== 2024-04-15T15:19:51.6800078Z downloaded 1.9 MB 2024-04-15T15:19:51.6800378Z 2024-04-15T15:19:51.6834420Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/RCurl_1.98-1.14_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:51.9887194Z Content type 'application/gzip' length 1150963 bytes (1.1 MB) 2024-04-15T15:19:52.0228636Z ================================================== 2024-04-15T15:19:52.0229296Z downloaded 1.1 MB 2024-04-15T15:19:52.0229480Z 2024-04-15T15:19:52.0264047Z trying URL 'https://cloud.r-project.org/src/contrib/RUnit_0.4.33.tar.gz' 2024-04-15T15:19:52.0837207Z Content type 'application/x-gzip' length 430737 bytes (420 KB) 2024-04-15T15:19:52.1076697Z ================================================== 2024-04-15T15:19:52.1077422Z downloaded 420 KB 2024-04-15T15:19:52.1077697Z 2024-04-15T15:19:52.1103236Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/BiocGenerics_0.49.1_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:19:52.6169315Z Content type 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2024-04-15T15:19:54.9089141Z trying URL 'https://cloud.r-project.org/src/contrib/rcmdcheck_1.4.0.tar.gz' 2024-04-15T15:19:54.9593955Z Content type 'application/x-gzip' length 73522 bytes (71 KB) 2024-04-15T15:19:54.9654060Z ================================================== 2024-04-15T15:19:54.9654677Z downloaded 71 KB 2024-04-15T15:19:54.9654943Z 2024-04-15T15:19:54.9677362Z trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/BiocCheck_1.39.32.tar.gz' 2024-04-15T15:19:55.0200249Z Content type 'application/x-gzip' length 4380233 bytes (4.2 MB) 2024-04-15T15:19:55.0615756Z ================================================== 2024-04-15T15:19:55.0616453Z downloaded 4.2 MB 2024-04-15T15:19:55.0616689Z 2024-04-15T15:19:55.2924096Z * installing *binary* package ‘bit’ ... 2024-04-15T15:19:55.2990290Z * DONE (bit) 2024-04-15T15:19:55.4763940Z * installing *binary* package ‘blob’ ... 2024-04-15T15:19:55.4805845Z * DONE (blob) 2024-04-15T15:19:55.7145956Z * installing *source* package ‘tidyselect’ ... 2024-04-15T15:19:55.7185704Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2024-04-15T15:19:55.7186816Z ** using staged installation 2024-04-15T15:19:55.7334237Z ** R 2024-04-15T15:19:55.7428028Z ** inst 2024-04-15T15:19:55.7443853Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:19:56.6282098Z ** help 2024-04-15T15:19:56.6722015Z *** installing help indices 2024-04-15T15:19:56.7018084Z ** building package indices 2024-04-15T15:19:56.8851929Z ** installing vignettes 2024-04-15T15:19:56.8894164Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:19:57.1635812Z ** testing if installed package can be loaded from final location 2024-04-15T15:19:57.4488635Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:19:57.4502950Z * DONE (tidyselect) 2024-04-15T15:19:57.6347483Z * installing *binary* package ‘generics’ ... 2024-04-15T15:19:57.6391304Z * DONE (generics) 2024-04-15T15:19:57.8262640Z * installing *binary* package ‘plogr’ ... 2024-04-15T15:19:57.8321396Z * DONE (plogr) 2024-04-15T15:20:07.7208304Z * installing *binary* package ‘BH’ ... 2024-04-15T15:20:08.7385571Z * DONE (BH) 2024-04-15T15:20:09.3539662Z * installing *binary* package ‘bitops’ ... 2024-04-15T15:20:09.3584624Z * DONE (bitops) 2024-04-15T15:20:09.7232015Z * installing *source* package ‘DBI’ ... 2024-04-15T15:20:09.7353692Z ** package ‘DBI’ successfully unpacked and MD5 sums checked 2024-04-15T15:20:09.7354907Z ** using staged installation 2024-04-15T15:20:09.7492084Z ** R 2024-04-15T15:20:09.7789005Z ** inst 2024-04-15T15:20:09.7824591Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:20:11.4957584Z ** help 2024-04-15T15:20:11.8758122Z *** installing help indices 2024-04-15T15:20:12.0026992Z *** copying figures 2024-04-15T15:20:12.0035272Z ** building package indices 2024-04-15T15:20:12.2919479Z ** installing vignettes 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2024-04-15T15:20:14.5536680Z *** installing help indices 2024-04-15T15:20:14.5768831Z ** building package indices 2024-04-15T15:20:14.7573364Z ** installing vignettes 2024-04-15T15:20:14.7610661Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:20:14.9176083Z ** testing if installed package can be loaded from final location 2024-04-15T15:20:15.0816403Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:20:15.0830000Z * DONE (RUnit) 2024-04-15T15:20:15.2992831Z * installing *binary* package ‘BiocGenerics’ ... 2024-04-15T15:20:15.3047923Z * DONE (BiocGenerics) 2024-04-15T15:20:15.5050227Z * installing *binary* package ‘selectr’ ... 2024-04-15T15:20:15.5101011Z * DONE (selectr) 2024-04-15T15:20:15.7275514Z * installing *source* package ‘BiocBaseUtils’ ... 2024-04-15T15:20:15.7276724Z ** using staged installation 2024-04-15T15:20:15.7381375Z ** R 2024-04-15T15:20:15.7408063Z ** inst 2024-04-15T15:20:15.7431350Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:20:15.9550039Z ** help 2024-04-15T15:20:15.9695741Z *** installing help indices 2024-04-15T15:20:15.9852480Z ** building package indices 2024-04-15T15:20:16.1567246Z ** installing vignettes 2024-04-15T15:20:16.1607083Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:20:16.3132202Z ** testing if installed package can be loaded from final location 2024-04-15T15:20:16.4680616Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:20:16.4688178Z * DONE (BiocBaseUtils) 2024-04-15T15:20:16.6915075Z * installing *binary* package ‘stringdist’ ... 2024-04-15T15:20:16.6984620Z * DONE (stringdist) 2024-04-15T15:20:16.9410270Z * installing *source* package ‘rcmdcheck’ ... 2024-04-15T15:20:16.9453908Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2024-04-15T15:20:16.9455019Z ** using staged installation 2024-04-15T15:20:16.9569285Z ** R 2024-04-15T15:20:16.9651440Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:20:18.0500751Z ** help 2024-04-15T15:20:18.0801500Z *** installing help indices 2024-04-15T15:20:18.1038901Z ** building package indices 2024-04-15T15:20:18.2902797Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:20:18.5417824Z ** testing if installed package can be loaded from final location 2024-04-15T15:20:18.8018187Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:20:18.8036299Z * DONE (rcmdcheck) 2024-04-15T15:20:19.0212440Z * installing *binary* package ‘bit64’ ... 2024-04-15T15:20:19.0271538Z * DONE (bit64) 2024-04-15T15:20:19.3106743Z * installing *binary* package ‘dplyr’ ... 2024-04-15T15:20:19.3206631Z * DONE (dplyr) 2024-04-15T15:20:19.6960100Z * installing *source* package ‘Biobase’ ... 2024-04-15T15:20:19.6961172Z ** using staged installation 2024-04-15T15:20:19.7082642Z ** libs 2024-04-15T15:20:19.7199813Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:20:19.7223662Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rinit.c -o Rinit.o 2024-04-15T15:20:19.7552767Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c anyMissing.c -o anyMissing.o 2024-04-15T15:20:19.7990646Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o 2024-04-15T15:20:19.8587557Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matchpt.c -o matchpt.o 2024-04-15T15:20:19.9079140Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowMedians.c -o rowMedians.o 2024-04-15T15:20:20.0160181Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sublist_extract.c -o sublist_extract.o 2024-04-15T15:20:20.0852926Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:20:20.1070549Z installing to /__w/_temp/Library/00LOCK-Biobase/00new/Biobase/libs 2024-04-15T15:20:20.1078229Z ** R 2024-04-15T15:20:20.1193507Z ** data 2024-04-15T15:20:20.1209102Z ** inst 2024-04-15T15:20:20.1337201Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:20:23.4981965Z ** help 2024-04-15T15:20:23.6755194Z *** installing help indices 2024-04-15T15:20:23.8212088Z ** building package indices 2024-04-15T15:20:24.1272053Z ** installing vignettes 2024-04-15T15:20:24.1320753Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:20:24.5207584Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:20:24.5326914Z ** testing if installed package can be loaded from final location 2024-04-15T15:20:24.9795940Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:20:24.9857620Z * DONE (Biobase) 2024-04-15T15:20:25.2673078Z * installing *binary* package ‘RCurl’ ... 2024-04-15T15:20:25.2784217Z * DONE (RCurl) 2024-04-15T15:20:25.6483227Z * installing *binary* package ‘graph’ ... 2024-04-15T15:20:25.6625449Z * DONE (graph) 2024-04-15T15:20:25.8962282Z * installing *source* package ‘rvest’ ... 2024-04-15T15:20:25.9000690Z ** package ‘rvest’ successfully unpacked and MD5 sums checked 2024-04-15T15:20:25.9001648Z ** using staged installation 2024-04-15T15:20:25.9125804Z ** R 2024-04-15T15:20:25.9268896Z ** demo 2024-04-15T15:20:25.9276803Z ** inst 2024-04-15T15:20:25.9293215Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:20:27.3562291Z ** help 2024-04-15T15:20:27.3960178Z *** installing help indices 2024-04-15T15:20:27.4243824Z *** copying figures 2024-04-15T15:20:27.4252875Z ** building package indices 2024-04-15T15:20:27.6096109Z ** installing vignettes 2024-04-15T15:20:27.6143734Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:20:27.9057940Z ** testing if installed package can be loaded from final location 2024-04-15T15:20:28.2229403Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:20:28.2252500Z * DONE (rvest) 2024-04-15T15:20:28.4983663Z * installing *binary* package ‘tidyr’ ... 2024-04-15T15:20:28.5074613Z * DONE (tidyr) 2024-04-15T15:20:30.2347665Z * installing *source* package ‘RSQLite’ ... 2024-04-15T15:20:30.3416139Z ** package ‘RSQLite’ successfully unpacked and MD5 sums checked 2024-04-15T15:20:30.3615935Z ** using staged installation 2024-04-15T15:20:30.3616584Z ** libs 2024-04-15T15:20:30.3750455Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:20:30.3772571Z using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:20:30.3799509Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbColumn.cpp -o DbColumn.o 2024-04-15T15:20:31.7974043Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbColumnDataSource.cpp -o DbColumnDataSource.o 2024-04-15T15:20:32.8194360Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbColumnDataSourceFactory.cpp -o DbColumnDataSourceFactory.o 2024-04-15T15:20:33.8288142Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbColumnStorage.cpp -o DbColumnStorage.o 2024-04-15T15:20:35.2700503Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbConnection.cpp -o DbConnection.o 2024-04-15T15:20:36.5938010Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbDataFrame.cpp -o DbDataFrame.o 2024-04-15T15:20:37.4942683Z In file included from vendor/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, 2024-04-15T15:20:37.4943771Z from vendor/boost/smart_ptr/detail/yield_k.hpp:23, 2024-04-15T15:20:37.4946214Z from vendor/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, 2024-04-15T15:20:37.4947246Z from vendor/boost/smart_ptr/detail/spinlock.hpp:42, 2024-04-15T15:20:37.4948109Z from vendor/boost/smart_ptr/detail/spinlock_pool.hpp:25, 2024-04-15T15:20:37.4948950Z from vendor/boost/smart_ptr/shared_ptr.hpp:29, 2024-04-15T15:20:37.4990754Z from vendor/boost/shared_ptr.hpp:17, 2024-04-15T15:20:37.4991521Z from DbColumn.h:9, 2024-04-15T15:20:37.4992405Z from DbDataFrame.cpp:3: 2024-04-15T15:20:37.5010562Z vendor/boost/config/pragma_message.hpp:24:34: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 2024-04-15T15:20:37.5013420Z 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) 2024-04-15T15:20:37.5014218Z | ^~~~~~~ 2024-04-15T15:20:37.5015198Z vendor/boost/bind.hpp:36:1: note: in expansion of macro ‘BOOST_PRAGMA_MESSAGE’ 2024-04-15T15:20:37.5018595Z 36 | BOOST_PRAGMA_MESSAGE( 2024-04-15T15:20:37.5019078Z | ^~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.6637424Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.6643334Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.6649594Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6653012Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6655510Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6664355Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6670306Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6674606Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6678306Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6679070Z from RSQLite.h:17, 2024-04-15T15:20:37.6685548Z from pch.h:1, 2024-04-15T15:20:37.6686107Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6689111Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.6692724Z vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible >’ 2024-04-15T15:20:37.6695559Z vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.6698511Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.6703092Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.6707962Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6711254Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.6715514Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.6719985Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6723239Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6726562Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.6731295Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.6734475Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.6735763Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.6737081Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6738153Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.6739210Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.6740028Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6740791Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6741522Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6742246Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6743924Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6744965Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6745850Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6746555Z from RSQLite.h:17, 2024-04-15T15:20:37.6747082Z from pch.h:1, 2024-04-15T15:20:37.6747627Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6750394Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible >]’ 2024-04-15T15:20:37.6752814Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6753473Z | ^ 2024-04-15T15:20:37.6754027Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.6754866Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.6755623Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6756356Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6757072Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6757785Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6758709Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6759808Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6760776Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6761488Z from RSQLite.h:17, 2024-04-15T15:20:37.6762031Z from pch.h:1, 2024-04-15T15:20:37.6762534Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6765596Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: 2024-04-15T15:20:37.6769580Z vendor/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 2024-04-15T15:20:37.6774208Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::Convertible]’ 2024-04-15T15:20:37.6779022Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 2024-04-15T15:20:37.6782757Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 2024-04-15T15:20:37.6786737Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ 2024-04-15T15:20:37.6790074Z vendor/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.6794095Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.6798366Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6801648Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6804827Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.6809521Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.6812573Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.6813848Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.6815125Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6815876Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.6816659Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.6817443Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6818179Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6818874Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6819575Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6820514Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6821587Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6822466Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6823177Z from RSQLite.h:17, 2024-04-15T15:20:37.6823722Z from pch.h:1, 2024-04-15T15:20:37.6824262Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6827036Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 2024-04-15T15:20:37.6829791Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6830678Z | ^ 2024-04-15T15:20:37.6831105Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.6831677Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.6832181Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6832685Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6833167Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6833655Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6834593Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6835524Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6836167Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6836656Z from RSQLite.h:17, 2024-04-15T15:20:37.6837016Z from pch.h:1, 2024-04-15T15:20:37.6837380Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6839395Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: 2024-04-15T15:20:37.6841715Z vendor/boost/iterator/iterator_concepts.hpp:114:7: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.6843534Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.6846329Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.6849247Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6851266Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6852815Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.6855006Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.6857297Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6859001Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6860655Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.6863150Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.6864842Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.6865490Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.6866158Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6866697Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.6867116Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.6867679Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6868086Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6868474Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6868863Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6869380Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6870378Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6870892Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6871284Z from RSQLite.h:17, 2024-04-15T15:20:37.6871572Z from pch.h:1, 2024-04-15T15:20:37.6871868Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6873212Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’ 2024-04-15T15:20:37.6874291Z 37 | ~model() 2024-04-15T15:20:37.6874521Z | ^ 2024-04-15T15:20:37.6875024Z vendor/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.6875587Z 208 | BOOST_CONCEPT_USAGE(Convertible) { 2024-04-15T15:20:37.6875918Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.6876287Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.6876736Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.6877134Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6877538Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6877942Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6878358Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6878884Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6879475Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6879987Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6880381Z from RSQLite.h:17, 2024-04-15T15:20:37.6880676Z from pch.h:1, 2024-04-15T15:20:37.6880969Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6882636Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.6884768Z vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.6886331Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.6888794Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.6891610Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6893613Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6895383Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.6897546Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.6899851Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6901567Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6903225Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.6905724Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.6907373Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.6908028Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.6908696Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6909103Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.6909519Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.6910170Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6910573Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6910969Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6911362Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6911875Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6912464Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6912972Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6913355Z from RSQLite.h:17, 2024-04-15T15:20:37.6913662Z from pch.h:1, 2024-04-15T15:20:37.6913958Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6915457Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept >]’ 2024-04-15T15:20:37.6916843Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6917205Z | ^ 2024-04-15T15:20:37.6917510Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.6917939Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.6918334Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6918737Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6919121Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6919699Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6920224Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6920940Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6921436Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6921824Z from RSQLite.h:17, 2024-04-15T15:20:37.6922116Z from pch.h:1, 2024-04-15T15:20:37.6922410Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6923980Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.6925882Z vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable >’ 2024-04-15T15:20:37.6927335Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.6929798Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.6932357Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6934343Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6935879Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.6938027Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.6940332Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6942038Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6943699Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.6946229Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.6947872Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.6948505Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.6949294Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6949867Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.6950775Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.6951217Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6951629Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6952017Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6952408Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6952934Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6953516Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6954017Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6954406Z from RSQLite.h:17, 2024-04-15T15:20:37.6954703Z from pch.h:1, 2024-04-15T15:20:37.6954994Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6956395Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable >]’ 2024-04-15T15:20:37.6957674Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6958026Z | ^ 2024-04-15T15:20:37.6958330Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.6958771Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.6959158Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6959558Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6959952Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6960332Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6960846Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6961441Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6961935Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.6962321Z from RSQLite.h:17, 2024-04-15T15:20:37.6962615Z from pch.h:1, 2024-04-15T15:20:37.6962910Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.6964547Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: 2024-04-15T15:20:37.6966605Z vendor/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 2024-04-15T15:20:37.6969048Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::Convertible]’ 2024-04-15T15:20:37.6971626Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 2024-04-15T15:20:37.6973602Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 2024-04-15T15:20:37.6975673Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ 2024-04-15T15:20:37.6977288Z vendor/boost/range/concepts.hpp:152:13: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.6979414Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.6981708Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.6983411Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.6985064Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.6988252Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.6991029Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.6992205Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.6993434Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.6993933Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.6994556Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.6995375Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.6996058Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.6996713Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.6997390Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.6998216Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.6999224Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.6999877Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7000482Z from RSQLite.h:17, 2024-04-15T15:20:37.7000798Z from pch.h:1, 2024-04-15T15:20:37.7001214Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7003463Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 2024-04-15T15:20:37.7005127Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7005624Z | ^ 2024-04-15T15:20:37.7005972Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7006769Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7007460Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7008159Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7008832Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7009496Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7010651Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7011881Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7012745Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7013357Z from RSQLite.h:17, 2024-04-15T15:20:37.7013664Z from pch.h:1, 2024-04-15T15:20:37.7013960Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7015885Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: 2024-04-15T15:20:37.7018749Z vendor/boost/range/concepts.hpp:152:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7023049Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7027238Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7029266Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7031613Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7035387Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7039276Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7041248Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7043689Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7046223Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7047907Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7048569Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7049239Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7049656Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7050079Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7050876Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7051320Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7051864Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7052266Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7052794Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7053391Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7053897Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7054287Z from RSQLite.h:17, 2024-04-15T15:20:37.7054586Z from pch.h:1, 2024-04-15T15:20:37.7054884Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7056182Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’ 2024-04-15T15:20:37.7057269Z 37 | ~model() 2024-04-15T15:20:37.7057524Z | ^ 2024-04-15T15:20:37.7058028Z vendor/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7058600Z 208 | BOOST_CONCEPT_USAGE(Convertible) { 2024-04-15T15:20:37.7058939Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7059301Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7059749Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7060160Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7060574Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7060969Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7061361Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7061886Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7062485Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7063002Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7063400Z from RSQLite.h:17, 2024-04-15T15:20:37.7063697Z from pch.h:1, 2024-04-15T15:20:37.7063992Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7065663Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.7067769Z vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7070501Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7073113Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7075103Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7076651Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7079012Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7081477Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7083178Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7084857Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7087382Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7089066Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7089714Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7090385Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7090790Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7091204Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7091630Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7092050Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7092449Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7092842Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7093354Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7093941Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7094473Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7094870Z from RSQLite.h:17, 2024-04-15T15:20:37.7095171Z from pch.h:1, 2024-04-15T15:20:37.7095459Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7096932Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7098292Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7098662Z | ^ 2024-04-15T15:20:37.7098963Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7099403Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7099802Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7100197Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7100591Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7100987Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7101489Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7102081Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7102578Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7103097Z from RSQLite.h:17, 2024-04-15T15:20:37.7103409Z from pch.h:1, 2024-04-15T15:20:37.7103833Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7105336Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept >]’: 2024-04-15T15:20:37.7107138Z vendor/boost/range/concepts.hpp:278:9: required from ‘struct boost::SinglePassRangeConcept >’ 2024-04-15T15:20:37.7109333Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7111866Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7113586Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7115250Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7117753Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7119436Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7120086Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7120749Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7121146Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7121564Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7121994Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7122397Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7122794Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7123186Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7123692Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7124296Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7124810Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7125198Z from RSQLite.h:17, 2024-04-15T15:20:37.7125497Z from pch.h:1, 2024-04-15T15:20:37.7125794Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7127177Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7128323Z 37 | ~model() 2024-04-15T15:20:37.7128559Z | ^ 2024-04-15T15:20:37.7129089Z vendor/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7129722Z 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) 2024-04-15T15:20:37.7130123Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7130678Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7131257Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7131669Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7132074Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7132465Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7132853Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7133369Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7133954Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7134445Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7134838Z from RSQLite.h:17, 2024-04-15T15:20:37.7135133Z from pch.h:1, 2024-04-15T15:20:37.7135429Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7136985Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.7138872Z vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible >’ 2024-04-15T15:20:37.7140328Z vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.7141867Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7144341Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7146920Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7148516Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7150890Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7153192Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7154900Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7156561Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7159251Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7161086Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7161737Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7162409Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7162810Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7163222Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7163662Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7164076Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7164476Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7164861Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7165385Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7165968Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7166469Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7166861Z from RSQLite.h:17, 2024-04-15T15:20:37.7167152Z from pch.h:1, 2024-04-15T15:20:37.7167441Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7168807Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible >]’ 2024-04-15T15:20:37.7170073Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7170432Z | ^ 2024-04-15T15:20:37.7170739Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7171184Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7171583Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7171988Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7172385Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7172777Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7173288Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7173873Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7174378Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7174761Z from RSQLite.h:17, 2024-04-15T15:20:37.7175052Z from pch.h:1, 2024-04-15T15:20:37.7175350Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7177009Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.7179128Z vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.7180688Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7183290Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7185896Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7188009Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7189560Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7191942Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7194245Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7195995Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7197655Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7200159Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7201825Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7202475Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7203152Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7203551Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7203972Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7204410Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7204818Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7205216Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7205610Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7206115Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7206722Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7207231Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7207630Z from RSQLite.h:17, 2024-04-15T15:20:37.7207921Z from pch.h:1, 2024-04-15T15:20:37.7208220Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7209706Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept >]’ 2024-04-15T15:20:37.7211065Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7211430Z | ^ 2024-04-15T15:20:37.7211739Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7212176Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7212750Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7213284Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7213672Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7214063Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7214577Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7215162Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7215652Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7216041Z from RSQLite.h:17, 2024-04-15T15:20:37.7216332Z from pch.h:1, 2024-04-15T15:20:37.7216622Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7218175Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.7220083Z vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable >’ 2024-04-15T15:20:37.7221534Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7223982Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7226570Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7228577Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7230297Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7232486Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7234791Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7236511Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7238168Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7240831Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7242517Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7243303Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7243966Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7244368Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7244778Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7245209Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7245615Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7246012Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7246400Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7246920Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7247517Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7248012Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7248414Z from RSQLite.h:17, 2024-04-15T15:20:37.7248706Z from pch.h:1, 2024-04-15T15:20:37.7248997Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7250369Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable >]’ 2024-04-15T15:20:37.7251634Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7251998Z | ^ 2024-04-15T15:20:37.7252297Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7252736Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7253135Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7253539Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7253935Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7254331Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7254838Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7255430Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7255932Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7256318Z from RSQLite.h:17, 2024-04-15T15:20:37.7256618Z from pch.h:1, 2024-04-15T15:20:37.7256913Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7258554Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.7260641Z vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7263099Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7265672Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7267786Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7269476Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7271849Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7274143Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7275859Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7277528Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7280023Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7281690Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7282340Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7283014Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7283419Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7283837Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7284282Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7284690Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7285078Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7285469Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7285993Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7286574Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7287077Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7287472Z from RSQLite.h:17, 2024-04-15T15:20:37.7287765Z from pch.h:1, 2024-04-15T15:20:37.7288067Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7289534Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7290894Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7291252Z | ^ 2024-04-15T15:20:37.7291559Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7292001Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7292392Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7292798Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7293194Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7293576Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7294269Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7295032Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7295525Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7295917Z from RSQLite.h:17, 2024-04-15T15:20:37.7296212Z from pch.h:1, 2024-04-15T15:20:37.7296503Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7298002Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept >]’: 2024-04-15T15:20:37.7299801Z vendor/boost/range/concepts.hpp:281:9: required from ‘struct boost::SinglePassRangeConcept >’ 2024-04-15T15:20:37.7301986Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7304286Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7305983Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7307648Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7310313Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7311988Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7312645Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7313301Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7313707Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7314123Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7314548Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7314966Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7315369Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7315768Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7316285Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7316875Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7317389Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7317779Z from RSQLite.h:17, 2024-04-15T15:20:37.7318078Z from pch.h:1, 2024-04-15T15:20:37.7318376Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7319740Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7320893Z 37 | ~model() 2024-04-15T15:20:37.7321306Z | ^ 2024-04-15T15:20:37.7321841Z vendor/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7322635Z 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) 2024-04-15T15:20:37.7323038Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7323422Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7323863Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7324266Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7324671Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7325073Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7325469Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7325992Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7326581Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7327084Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7327482Z from RSQLite.h:17, 2024-04-15T15:20:37.7327771Z from pch.h:1, 2024-04-15T15:20:37.7328066Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7329584Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’: 2024-04-15T15:20:37.7331390Z vendor/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept >’ 2024-04-15T15:20:37.7333576Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7335887Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7337589Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7339255Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7341759Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7343543Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7344213Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7344882Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7345280Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7345715Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7346175Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7346603Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7347004Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7347535Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7348079Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7348668Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7349176Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7349567Z from RSQLite.h:17, 2024-04-15T15:20:37.7350018Z from pch.h:1, 2024-04-15T15:20:37.7350314Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7351656Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7352886Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7353252Z | ^ 2024-04-15T15:20:37.7353564Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7354006Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7354400Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7354806Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7355200Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7355585Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7356102Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7356697Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7357185Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7357588Z from RSQLite.h:17, 2024-04-15T15:20:37.7357888Z from pch.h:1, 2024-04-15T15:20:37.7358177Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7359533Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::SinglePassRangeConcept >]’: 2024-04-15T15:20:37.7362268Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7363931Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7364568Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7365233Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7365634Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7366053Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7366696Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7367104Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7367504Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7367892Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7368411Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7369007Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7369500Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7369891Z from RSQLite.h:17, 2024-04-15T15:20:37.7370186Z from pch.h:1, 2024-04-15T15:20:37.7370473Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7371772Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = boost::container::stable_vector]’ 2024-04-15T15:20:37.7372737Z 37 | ~model() 2024-04-15T15:20:37.7372974Z | ^ 2024-04-15T15:20:37.7373488Z vendor/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7374100Z 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) 2024-04-15T15:20:37.7374477Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7374848Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7375289Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7375686Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7376084Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7376488Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7376891Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7377402Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7377994Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7378491Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7378872Z from RSQLite.h:17, 2024-04-15T15:20:37.7379170Z from pch.h:1, 2024-04-15T15:20:37.7379465Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7381229Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’: 2024-04-15T15:20:37.7383476Z vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7385316Z vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7387236Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7390419Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7393536Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.7395339Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7397527Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7399860Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7401604Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7403296Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7405925Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7407669Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7408317Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7408981Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7409386Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7409798Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7410235Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7410641Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7411028Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7411417Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7411933Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7412521Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7413024Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7413420Z from RSQLite.h:17, 2024-04-15T15:20:37.7413715Z from pch.h:1, 2024-04-15T15:20:37.7414012Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7415582Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7417028Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7417387Z | ^ 2024-04-15T15:20:37.7417695Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7418134Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7418670Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7419080Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7419590Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7419976Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7420495Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7421089Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7421589Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7421975Z from RSQLite.h:17, 2024-04-15T15:20:37.7422272Z from pch.h:1, 2024-04-15T15:20:37.7422569Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7424447Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’: 2024-04-15T15:20:37.7426941Z vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7428867Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7431890Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7434839Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.7437189Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied*, std::vector > > > >’ 2024-04-15T15:20:37.7438886Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7441069Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7443410Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7445144Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7446826Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7449634Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7451521Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7452175Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7452839Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7453238Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7453656Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7454088Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7454494Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7454905Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7455311Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7455830Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7456409Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7456910Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7457303Z from RSQLite.h:17, 2024-04-15T15:20:37.7457594Z from pch.h:1, 2024-04-15T15:20:37.7457889Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7459578Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7461120Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7461480Z | ^ 2024-04-15T15:20:37.7461787Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7462227Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7462618Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7463023Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7463423Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7463806Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7464322Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7464906Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7465399Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7465798Z from RSQLite.h:17, 2024-04-15T15:20:37.7466096Z from pch.h:1, 2024-04-15T15:20:37.7466437Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7468192Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’: 2024-04-15T15:20:37.7470582Z vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7472571Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7475402Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7478479Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.7480818Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied*, std::vector > > > >’ 2024-04-15T15:20:37.7482528Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7484711Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7487035Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7488779Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7490474Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7493067Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7494830Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7495479Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7496148Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7496550Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7496971Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7497400Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7497797Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7498202Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7498610Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7499140Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7499726Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7500232Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7500615Z from RSQLite.h:17, 2024-04-15T15:20:37.7500914Z from pch.h:1, 2024-04-15T15:20:37.7501207Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7502912Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7504461Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7504841Z | ^ 2024-04-15T15:20:37.7505149Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7505583Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7505978Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7506379Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7506766Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7507156Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7507681Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7508272Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7508762Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7509152Z from RSQLite.h:17, 2024-04-15T15:20:37.7509450Z from pch.h:1, 2024-04-15T15:20:37.7509890Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7511743Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’: 2024-04-15T15:20:37.7514202Z vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7517029Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7519987Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.7522339Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied*, std::vector > > > >’ 2024-04-15T15:20:37.7524049Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7526229Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7528559Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7530448Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7532277Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7534893Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7536659Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7537312Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7537988Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7538404Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7538828Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7539261Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7539665Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7540065Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7540456Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7540963Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7541552Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7542053Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7542443Z from RSQLite.h:17, 2024-04-15T15:20:37.7542747Z from pch.h:1, 2024-04-15T15:20:37.7543044Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7544771Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7546279Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7546643Z | ^ 2024-04-15T15:20:37.7546951Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7547384Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7547784Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7548190Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7548583Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7548984Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7549504Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7550244Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7550737Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7551129Z from RSQLite.h:17, 2024-04-15T15:20:37.7551428Z from pch.h:1, 2024-04-15T15:20:37.7551715Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7553416Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.7555570Z vendor/boost/range/concepts.hpp:278:9: required from ‘struct boost::SinglePassRangeConcept > >’ 2024-04-15T15:20:37.7557957Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7560288Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7562020Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7563730Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7566353Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7568093Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7568738Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7569406Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7569821Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7570241Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7570665Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7571082Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7571485Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7571873Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7572389Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7572975Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7573470Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7573864Z from RSQLite.h:17, 2024-04-15T15:20:37.7574166Z from pch.h:1, 2024-04-15T15:20:37.7574456Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7576031Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.7577347Z 37 | ~model() 2024-04-15T15:20:37.7577585Z | ^ 2024-04-15T15:20:37.7578096Z vendor/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7578736Z 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) 2024-04-15T15:20:37.7579141Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7579522Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7579967Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7580373Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7580771Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7581165Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7581683Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7582299Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7582890Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7583388Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7583782Z from RSQLite.h:17, 2024-04-15T15:20:37.7584071Z from pch.h:1, 2024-04-15T15:20:37.7584372Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7586155Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’: 2024-04-15T15:20:37.7588439Z vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7590475Z vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7592459Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7595365Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7598367Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.7600158Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7602356Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7604690Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7606435Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7608127Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7610903Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7612787Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7613433Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7614099Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7614500Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7614930Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7615366Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7615783Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7616175Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7616571Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7617087Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7617678Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7618182Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7618568Z from RSQLite.h:17, 2024-04-15T15:20:37.7618864Z from pch.h:1, 2024-04-15T15:20:37.7619157Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7620738Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7622195Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7622557Z | ^ 2024-04-15T15:20:37.7622860Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7623296Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7623693Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7624105Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7624489Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7624882Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7625395Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7625969Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7626471Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7626860Z from RSQLite.h:17, 2024-04-15T15:20:37.7627149Z from pch.h:1, 2024-04-15T15:20:37.7627789Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7629892Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’: 2024-04-15T15:20:37.7632443Z vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7634417Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7637441Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7640573Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.7642964Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied*, std::vector > > > >’ 2024-04-15T15:20:37.7644694Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7646872Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7649194Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7650926Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7652620Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7655247Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7657016Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7657664Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7658491Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7658891Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7659374Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7660141Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7660672Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7661138Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7661713Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7662346Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7662993Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7663665Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7664169Z from RSQLite.h:17, 2024-04-15T15:20:37.7664629Z from pch.h:1, 2024-04-15T15:20:37.7664999Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7666963Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7668866Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7669293Z | ^ 2024-04-15T15:20:37.7670036Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7670775Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7671244Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7712375Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7713097Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7713718Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7714505Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7715478Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7716286Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7716937Z from RSQLite.h:17, 2024-04-15T15:20:37.7717407Z from pch.h:1, 2024-04-15T15:20:37.7717850Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7720919Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’: 2024-04-15T15:20:37.7725207Z vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7728726Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7734059Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7739675Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.7744237Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied*, std::vector > > > >’ 2024-04-15T15:20:37.7747508Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7751933Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7756749Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7758978Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7760920Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7763546Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7765276Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7765947Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7766621Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7767024Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7767444Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7767872Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7768289Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7768684Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7769083Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7769603Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7770206Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7770707Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7771116Z from RSQLite.h:17, 2024-04-15T15:20:37.7771426Z from pch.h:1, 2024-04-15T15:20:37.7771723Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7774084Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7776011Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7776406Z | ^ 2024-04-15T15:20:37.7776717Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7777156Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7777559Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7777965Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7778368Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7778771Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7779288Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7779870Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7780374Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7780765Z from RSQLite.h:17, 2024-04-15T15:20:37.7781058Z from pch.h:1, 2024-04-15T15:20:37.7781352Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7783452Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’: 2024-04-15T15:20:37.7786095Z vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.7788972Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7792293Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.7794740Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied*, std::vector > > > >’ 2024-04-15T15:20:37.7796470Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7798036Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7798950Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7799822Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7800679Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7802654Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7802801Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7803226Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7803441Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7803563Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7803739Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7803890Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7804033Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7804164Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7804312Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7804566Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7804969Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7805155Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7805387Z from RSQLite.h:17, 2024-04-15T15:20:37.7805485Z from pch.h:1, 2024-04-15T15:20:37.7805596Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7807078Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.7807299Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7807378Z | ^ 2024-04-15T15:20:37.7807555Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7807705Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7807849Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7808002Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7808133Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7808272Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7808528Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7808735Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7808902Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7809004Z from RSQLite.h:17, 2024-04-15T15:20:37.7809095Z from pch.h:1, 2024-04-15T15:20:37.7809206Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7810702Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.7811363Z vendor/boost/range/concepts.hpp:281:9: required from ‘struct boost::SinglePassRangeConcept > >’ 2024-04-15T15:20:37.7812937Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7813843Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7814729Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7815609Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7817392Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7817520Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7818043Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7818262Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7818492Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7818664Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7818813Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7818953Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7819091Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7819231Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7819483Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7819690Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7819856Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7819955Z from RSQLite.h:17, 2024-04-15T15:20:37.7820055Z from pch.h:1, 2024-04-15T15:20:37.7820164Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7821546Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.7821643Z 37 | ~model() 2024-04-15T15:20:37.7821725Z | ^ 2024-04-15T15:20:37.7822116Z vendor/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7822303Z 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) 2024-04-15T15:20:37.7822396Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7822577Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7822715Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7822861Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7823014Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7823144Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7823283Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7823544Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7823749Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7823921Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7824017Z from RSQLite.h:17, 2024-04-15T15:20:37.7824108Z from pch.h:1, 2024-04-15T15:20:37.7824221Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7825513Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: 2024-04-15T15:20:37.7826168Z vendor/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept > >’ 2024-04-15T15:20:37.7827728Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7828629Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.7829908Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.7831058Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.7832866Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7832996Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7833408Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7833623Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7833750Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7833938Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7834082Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7834226Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7834363Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7834503Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7834756Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7834969Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7835136Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7835239Z from RSQLite.h:17, 2024-04-15T15:20:37.7835334Z from pch.h:1, 2024-04-15T15:20:37.7835444Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7836559Z vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.7836766Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7836843Z | ^ 2024-04-15T15:20:37.7837025Z In file included from vendor/boost/concept/assert.hpp:35, 2024-04-15T15:20:37.7837164Z from vendor/boost/concept_check.hpp:20, 2024-04-15T15:20:37.7837300Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7837446Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7837574Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7837719Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7837974Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7838185Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7838356Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7838453Z from RSQLite.h:17, 2024-04-15T15:20:37.7838543Z from pch.h:1, 2024-04-15T15:20:37.7838660Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7839787Z vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::SinglePassRangeConcept > >]’: 2024-04-15T15:20:37.7841718Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7841994Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7842400Z vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7842613Z 50 | static void failed() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7842732Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7842901Z In file included from vendor/boost/concept_check.hpp:31, 2024-04-15T15:20:37.7843049Z from vendor/boost/range/concepts.hpp:19, 2024-04-15T15:20:37.7843189Z from vendor/boost/range/size_type.hpp:20, 2024-04-15T15:20:37.7843327Z from vendor/boost/range/size.hpp:21, 2024-04-15T15:20:37.7843465Z from vendor/boost/range/functions.hpp:20, 2024-04-15T15:20:37.7843724Z from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30, 2024-04-15T15:20:37.7843941Z from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20, 2024-04-15T15:20:37.7844105Z from vendor/boost/ptr_container/ptr_vector.hpp:20, 2024-04-15T15:20:37.7844203Z from RSQLite.h:17, 2024-04-15T15:20:37.7844304Z from pch.h:1, 2024-04-15T15:20:37.7844413Z from DbDataFrame.cpp:1: 2024-04-15T15:20:37.7845348Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = std::vector >]’ 2024-04-15T15:20:37.7845441Z 37 | ~model() 2024-04-15T15:20:37.7845521Z | ^ 2024-04-15T15:20:37.7845900Z vendor/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7846079Z 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) 2024-04-15T15:20:37.7846169Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7847329Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible >]’: 2024-04-15T15:20:37.7848639Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.7849362Z vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible >’ 2024-04-15T15:20:37.7850171Z vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.7850952Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7852678Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7853291Z vendor/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7854948Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7855961Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7856812Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7857648Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7859344Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7859477Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7859831Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7860048Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7860172Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7861115Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible::~CopyConstructible() [with TT = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7861201Z 37 | ~model() 2024-04-15T15:20:37.7861283Z | ^ 2024-04-15T15:20:37.7861657Z vendor/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7861807Z 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { 2024-04-15T15:20:37.7861899Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7863004Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: 2024-04-15T15:20:37.7864429Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ 2024-04-15T15:20:37.7865218Z vendor/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 2024-04-15T15:20:37.7866923Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::Convertible]’ 2024-04-15T15:20:37.7867983Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 2024-04-15T15:20:37.7868985Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 2024-04-15T15:20:37.7870077Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7871847Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7872747Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7873612Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7874463Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7876156Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7876287Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7876646Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7876857Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7876979Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7878036Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’ 2024-04-15T15:20:37.7878128Z 37 | ~model() 2024-04-15T15:20:37.7878207Z | ^ 2024-04-15T15:20:37.7878582Z vendor/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7878714Z 208 | BOOST_CONCEPT_USAGE(Convertible) { 2024-04-15T15:20:37.7878799Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7879910Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept >]’: 2024-04-15T15:20:37.7881339Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.7882152Z vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.7882930Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7884634Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7885795Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7886537Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7888083Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7888982Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7889834Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7890679Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7892370Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7892496Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7892849Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7893067Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7893189Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7894366Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7894452Z 37 | ~model() 2024-04-15T15:20:37.7894570Z | ^ 2024-04-15T15:20:37.7894954Z vendor/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7895152Z 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) 2024-04-15T15:20:37.7895251Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7896234Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable >]’: 2024-04-15T15:20:37.7897548Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.7898234Z vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable >’ 2024-04-15T15:20:37.7899019Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7900844Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7901992Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7902615Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7904154Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7905054Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7905901Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7906739Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7908420Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7908552Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7908904Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7909119Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7909239Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7910431Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable::~EqualityComparable() [with TT = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7910522Z 37 | ~model() 2024-04-15T15:20:37.7910611Z | ^ 2024-04-15T15:20:37.7910980Z vendor/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7911135Z 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { 2024-04-15T15:20:37.7911228Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7912325Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: 2024-04-15T15:20:37.7913746Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ 2024-04-15T15:20:37.7914505Z vendor/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 2024-04-15T15:20:37.7916359Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::Convertible]’ 2024-04-15T15:20:37.7917549Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 2024-04-15T15:20:37.7918540Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 2024-04-15T15:20:37.7919135Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7920676Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7921576Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7922417Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7923261Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7924944Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7925074Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7925426Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7925634Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7925759Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7926794Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’ 2024-04-15T15:20:37.7926880Z 37 | ~model() 2024-04-15T15:20:37.7926966Z | ^ 2024-04-15T15:20:37.7927332Z vendor/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7927463Z 208 | BOOST_CONCEPT_USAGE(Convertible) { 2024-04-15T15:20:37.7927565Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7928645Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept >]’: 2024-04-15T15:20:37.7930054Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.7930843Z vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7932659Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7933834Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7934837Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7935433Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7936965Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7937870Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7938713Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7939566Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7941245Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7941382Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7941726Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7941934Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7942061Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7943207Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7943299Z 37 | ~model() 2024-04-15T15:20:37.7943387Z | ^ 2024-04-15T15:20:37.7943768Z vendor/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7943971Z 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) 2024-04-15T15:20:37.7944064Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7945041Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible >]’: 2024-04-15T15:20:37.7946469Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.7947139Z vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible >’ 2024-04-15T15:20:37.7948082Z vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.7948887Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7950974Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7951601Z vendor/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7953146Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7954042Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7954887Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7955739Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7957425Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7957558Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7957905Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7958114Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7958241Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7959173Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible::~CopyConstructible() [with TT = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7959271Z 37 | ~model() 2024-04-15T15:20:37.7959351Z | ^ 2024-04-15T15:20:37.7959713Z vendor/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7959872Z 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { 2024-04-15T15:20:37.7959959Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7961052Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept >]’: 2024-04-15T15:20:37.7962630Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.7963569Z vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’ 2024-04-15T15:20:37.7964356Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7966051Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7967096Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7967715Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7969250Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7970136Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7970992Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7971871Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7973548Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7973680Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7974028Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7974243Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7974376Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7975544Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7975637Z 37 | ~model() 2024-04-15T15:20:37.7975716Z | ^ 2024-04-15T15:20:37.7976099Z vendor/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7976299Z 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) 2024-04-15T15:20:37.7976392Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7977491Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable >]’: 2024-04-15T15:20:37.7978923Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.7979589Z vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable >’ 2024-04-15T15:20:37.7980374Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7982064Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7983105Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7983715Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.7985247Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.7986138Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7986983Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.7987830Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.7989886Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.7990050Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.7990574Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.7990792Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.7990913Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.7991873Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable::~EqualityComparable() [with TT = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.7991967Z 37 | ~model() 2024-04-15T15:20:37.7992049Z | ^ 2024-04-15T15:20:37.7992414Z vendor/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.7992577Z 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { 2024-04-15T15:20:37.7992663Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.7993757Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept >]’: 2024-04-15T15:20:37.7995208Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.7995990Z vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’ 2024-04-15T15:20:37.7997691Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’ 2024-04-15T15:20:37.7998725Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.7999732Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.8000324Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8001866Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.8002762Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.8003612Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.8004454Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.8006265Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8006508Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8006864Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8007081Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8007200Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8008327Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = boost::container::stable_vector_iterator]’ 2024-04-15T15:20:37.8008419Z 37 | ~model() 2024-04-15T15:20:37.8008498Z | ^ 2024-04-15T15:20:37.8008895Z vendor/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8009090Z 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) 2024-04-15T15:20:37.8009183Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8010116Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]’: 2024-04-15T15:20:37.8011375Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’ 2024-04-15T15:20:37.8012010Z vendor/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept >’ 2024-04-15T15:20:37.8013553Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’ 2024-04-15T15:20:37.8014447Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’ 2024-04-15T15:20:37.8015291Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’ 2024-04-15T15:20:37.8016126Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’ 2024-04-15T15:20:37.8017807Z vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8017940Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8018297Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8018507Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8018625Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8019531Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = boost::container::stable_vector]’ 2024-04-15T15:20:37.8019745Z 37 | ~model() 2024-04-15T15:20:37.8019829Z | ^ 2024-04-15T15:20:37.8020333Z vendor/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8020503Z 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) 2024-04-15T15:20:37.8020594Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8021793Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.8023311Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’ 2024-04-15T15:20:37.8024175Z vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8025176Z vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8026155Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8028050Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.8028675Z vendor/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8030506Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8031442Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8032314Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8033180Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8034960Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8035088Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8035611Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8035831Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8036095Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8037231Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.8037318Z 37 | ~model() 2024-04-15T15:20:37.8037403Z | ^ 2024-04-15T15:20:37.8037764Z vendor/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8037915Z 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { 2024-04-15T15:20:37.8038010Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8039318Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.8040948Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’ 2024-04-15T15:20:37.8041942Z vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8042928Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8044819Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.8046054Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.8046674Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8048225Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8049142Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8050006Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8051006Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8052800Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8053048Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8053403Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8053610Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8053738Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8055116Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.8055215Z 37 | ~model() 2024-04-15T15:20:37.8055295Z | ^ 2024-04-15T15:20:37.8055686Z vendor/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8055889Z 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) 2024-04-15T15:20:37.8055983Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8057169Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.8058717Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’ 2024-04-15T15:20:37.8059588Z vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8060573Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8062464Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.8063702Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.8064314Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8065868Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8066897Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8067875Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8068736Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8070699Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8070841Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8071192Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8071406Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8071524Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8072668Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.8072759Z 37 | ~model() 2024-04-15T15:20:37.8072842Z | ^ 2024-04-15T15:20:37.8073212Z vendor/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8073372Z 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { 2024-04-15T15:20:37.8073459Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8074752Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.8076356Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’ 2024-04-15T15:20:37.8077350Z vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8079236Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.8080481Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.8081816Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied*, std::vector > > > >’ 2024-04-15T15:20:37.8082549Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8084103Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8085018Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8085895Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8086766Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8088551Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8088677Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8089028Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8089241Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8089362Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8090711Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.8090796Z 37 | ~model() 2024-04-15T15:20:37.8090881Z | ^ 2024-04-15T15:20:37.8091260Z vendor/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8091448Z 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) 2024-04-15T15:20:37.8091551Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8092767Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.8094316Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’ 2024-04-15T15:20:37.8095239Z vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8096261Z vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8097389Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8099448Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.8100068Z vendor/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8101637Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8102558Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8103418Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8104282Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8106071Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8106212Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8106559Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8106768Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8106894Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8108055Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.8108148Z 37 | ~model() 2024-04-15T15:20:37.8108234Z | ^ 2024-04-15T15:20:37.8108600Z vendor/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8108759Z 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { 2024-04-15T15:20:37.8108846Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8110336Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.8112190Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’ 2024-04-15T15:20:37.8113362Z vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8114376Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8116296Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.8117563Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.8118187Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8119751Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8120664Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8121538Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8122399Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8124178Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8124318Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8124667Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8124886Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8125007Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8126400Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.8126494Z 37 | ~model() 2024-04-15T15:20:37.8126575Z | ^ 2024-04-15T15:20:37.8126962Z vendor/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8127155Z 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) 2024-04-15T15:20:37.8127374Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8128606Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.8130260Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’ 2024-04-15T15:20:37.8131151Z vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8132167Z vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8134094Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.8135356Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.8135976Z vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8137532Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8138442Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8139309Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8140177Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8141965Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8142091Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8142451Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8142658Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8142777Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8144478Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.8144685Z 37 | ~model() 2024-04-15T15:20:37.8144766Z | ^ 2024-04-15T15:20:37.8145163Z vendor/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8145318Z 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { 2024-04-15T15:20:37.8145411Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8146728Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’: 2024-04-15T15:20:37.8148369Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements*, std::vector > > > >]’ 2024-04-15T15:20:37.8149394Z vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >’ 2024-04-15T15:20:37.8151501Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator*, std::vector > > >]’ 2024-04-15T15:20:37.8152779Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied*, std::vector > > > >::value’ 2024-04-15T15:20:37.8153993Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied*, std::vector > > > >’ 2024-04-15T15:20:37.8154585Z vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 2024-04-15T15:20:37.8156152Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8157070Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8157927Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8158789Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8160733Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8161025Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8161378Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8161585Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8161709Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8163076Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ 2024-04-15T15:20:37.8163164Z 37 | ~model() 2024-04-15T15:20:37.8163256Z | ^ 2024-04-15T15:20:37.8163637Z vendor/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8163826Z 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) 2024-04-15T15:20:37.8163918Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:37.8164866Z vendor/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept > >]’: 2024-04-15T15:20:37.8166154Z vendor/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ 2024-04-15T15:20:37.8166812Z vendor/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept > >’ 2024-04-15T15:20:37.8168371Z vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, boost::concepts::detail::wrap_constraints*) [with Model = boost::SinglePassRangeConcept > >]’ 2024-04-15T15:20:37.8169279Z vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ 2024-04-15T15:20:37.8170140Z vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ 2024-04-15T15:20:37.8171041Z vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ 2024-04-15T15:20:37.8172821Z vendor/boost/range/algorithm_ext/for_each.hpp:54:13: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’ 2024-04-15T15:20:37.8172955Z DbDataFrame.cpp:54:18: required from here 2024-04-15T15:20:37.8173298Z vendor/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 2024-04-15T15:20:37.8173510Z 20 | ~usage_requirements() { ((Model*)0)->~Model(); } 2024-04-15T15:20:37.8173634Z | ~~~~~~~~~~~~~~~~~~~^~ 2024-04-15T15:20:37.8174676Z vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = std::vector >]’ 2024-04-15T15:20:37.8174875Z 37 | ~model() 2024-04-15T15:20:37.8174955Z | ^ 2024-04-15T15:20:37.8175338Z vendor/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 2024-04-15T15:20:37.8175517Z 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) 2024-04-15T15:20:37.8175606Z | ^~~~~~~~~~~~~~~~~~~ 2024-04-15T15:20:38.7351721Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbResult.cpp -o DbResult.o 2024-04-15T15:20:40.0662341Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteColumnDataSource.cpp -o SqliteColumnDataSource.o 2024-04-15T15:20:42.8503013Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteColumnDataSourceFactory.cpp -o SqliteColumnDataSourceFactory.o 2024-04-15T15:20:43.8763097Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteDataFrame.cpp -o SqliteDataFrame.o 2024-04-15T15:20:44.9761464Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteResult.cpp -o SqliteResult.o 2024-04-15T15:20:46.0490939Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteResultImpl.cpp -o SqliteResultImpl.o 2024-04-15T15:20:47.8689895Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c affinity.c -o affinity.o 2024-04-15T15:20:47.8933956Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connection.cpp -o connection.o 2024-04-15T15:20:49.0716045Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cpp11.cpp -o cpp11.o 2024-04-15T15:20:50.5029076Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ext-csv.c -o ext-csv.o 2024-04-15T15:20:50.6901640Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ext-math.c -o ext-math.o 2024-04-15T15:20:51.0231365Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ext-regexp.c -o ext-regexp.o 2024-04-15T15:20:51.2734743Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ext-series.c -o ext-series.o 2024-04-15T15:20:51.3525434Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c extensions.cpp -o extensions.o 2024-04-15T15:20:52.4490208Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c import-file.c -o import-file.o 2024-04-15T15:20:52.5319932Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c result.cpp -o result.o 2024-04-15T15:20:53.6609388Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rsqlite.cpp -o rsqlite.o 2024-04-15T15:20:54.8483889Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/__w/_temp/Library/plogr/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vendor/sqlite3/sqlite3.c -o vendor/sqlite3/sqlite3.o 2024-04-15T15:21:30.0897729Z g++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o RSQLite.so DbColumn.o DbColumnDataSource.o DbColumnDataSourceFactory.o DbColumnStorage.o DbConnection.o DbDataFrame.o DbResult.o SqliteColumnDataSource.o SqliteColumnDataSourceFactory.o SqliteDataFrame.o SqliteResult.o SqliteResultImpl.o affinity.o connection.o cpp11.o ext-csv.o ext-math.o ext-regexp.o ext-series.o extensions.o import-file.o result.o rsqlite.o vendor/sqlite3/sqlite3.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:21:30.2403214Z installing to /__w/_temp/Library/00LOCK-RSQLite/00new/RSQLite/libs 2024-04-15T15:21:30.2527722Z ** R 2024-04-15T15:21:30.2669108Z ** inst 2024-04-15T15:21:30.2685606Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:21:31.6877711Z ** help 2024-04-15T15:21:31.7351844Z *** installing help indices 2024-04-15T15:21:31.7676023Z ** building package indices 2024-04-15T15:21:31.9553772Z ** installing vignettes 2024-04-15T15:21:31.9602703Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:21:32.4173768Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:21:32.4626082Z ** testing if installed package can be loaded from final location 2024-04-15T15:21:32.9925918Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:21:32.9963618Z * DONE (RSQLite) 2024-04-15T15:21:34.2542127Z * installing *binary* package ‘RBGL’ ... 2024-04-15T15:21:34.2975903Z * DONE (RBGL) 2024-04-15T15:21:34.7101899Z * installing *source* package ‘dbplyr’ ... 2024-04-15T15:21:34.7241792Z ** package ‘dbplyr’ successfully unpacked and MD5 sums checked 2024-04-15T15:21:34.7242655Z ** using staged installation 2024-04-15T15:21:34.7423452Z ** R 2024-04-15T15:21:34.7907225Z ** inst 2024-04-15T15:21:34.7937782Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:21:41.9682469Z ** help 2024-04-15T15:21:42.2480530Z *** installing help indices 2024-04-15T15:21:42.3822283Z *** copying figures 2024-04-15T15:21:42.3832586Z ** building package indices 2024-04-15T15:21:42.6316350Z ** installing vignettes 2024-04-15T15:21:42.6467080Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:21:43.3517314Z ** testing if installed package can be loaded from final location 2024-04-15T15:21:44.1687083Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:21:44.1770377Z * DONE (dbplyr) 2024-04-15T15:21:44.4392411Z * installing *binary* package ‘biocViews’ ... 2024-04-15T15:21:44.4476668Z * DONE (biocViews) 2024-04-15T15:21:44.6728209Z * installing *source* package ‘BiocFileCache’ ... 2024-04-15T15:21:44.6729366Z ** using staged installation 2024-04-15T15:21:44.6844427Z ** R 2024-04-15T15:21:44.6923314Z ** inst 2024-04-15T15:21:44.6944438Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:21:46.9543145Z ** help 2024-04-15T15:21:46.9790510Z *** installing help indices 2024-04-15T15:21:46.9943843Z ** building package indices 2024-04-15T15:21:47.1636076Z ** installing vignettes 2024-04-15T15:21:47.1681894Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:21:47.9788389Z ** testing if installed package can be loaded from final location 2024-04-15T15:21:48.8436608Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:21:48.8471643Z * DONE (BiocFileCache) 2024-04-15T15:21:49.2163804Z * installing *source* package ‘BiocCheck’ ... 2024-04-15T15:21:49.2164658Z ** using staged installation 2024-04-15T15:21:49.2302228Z ** R 2024-04-15T15:21:49.2415480Z ** inst 2024-04-15T15:21:49.2526195Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:21:52.3826234Z ** help 2024-04-15T15:21:52.4026227Z *** installing help indices 2024-04-15T15:21:52.4203923Z ** building package indices 2024-04-15T15:21:52.5873081Z ** installing vignettes 2024-04-15T15:21:52.5917724Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:21:54.0990089Z ** testing if installed package can be loaded from final location 2024-04-15T15:21:55.6422532Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:21:55.6467638Z * DONE (BiocCheck) 2024-04-15T15:21:55.6590600Z 2024-04-15T15:21:55.6591020Z The downloaded source packages are in 2024-04-15T15:21:55.6595202Z ‘/tmp/RtmpyrmPeF/downloaded_packages’ 2024-04-15T15:21:55.6596426Z **** 2024-04-15 15:21:55.65894 pass number 1 at installing dependencies: local dependencies **** 2024-04-15T15:21:57.8967443Z zlibbioc (NA -> 1.49.3 ) [CRAN] 2024-04-15T15:21:57.8968191Z GenomeInf... (NA -> 1.2.12 ) [CRAN] 2024-04-15T15:21:57.8968852Z UCSC.utils (NA -> 0.99.5 ) [CRAN] 2024-04-15T15:21:57.8969492Z GenomeInfoDb (NA -> 1.39.13) [CRAN] 2024-04-15T15:21:57.8970135Z XVector (NA -> 0.43.1 ) [CRAN] 2024-04-15T15:21:57.8970736Z Biostrings (NA -> 2.71.5 ) [CRAN] 2024-04-15T15:21:57.8971298Z png (NA -> 0.1-8 ) [CRAN] 2024-04-15T15:21:57.8971861Z KEGGREST (NA -> 1.43.0 ) [CRAN] 2024-04-15T15:21:57.8972498Z S4Vectors (NA -> 0.41.6 ) [CRAN] 2024-04-15T15:21:57.8973103Z IRanges (NA -> 2.37.1 ) [CRAN] 2024-04-15T15:21:57.8973738Z formatR (NA -> 1.14 ) [CRAN] 2024-04-15T15:21:57.8974289Z abind (NA -> 1.4-5 ) [CRAN] 2024-04-15T15:21:57.8974852Z matrixStats (NA -> 1.3.0 ) [CRAN] 2024-04-15T15:21:57.8975418Z futile.op... (NA -> 1.0.1 ) [CRAN] 2024-04-15T15:21:57.8976004Z lambda.r (NA -> 1.2.4 ) [CRAN] 2024-04-15T15:21:57.8976647Z SparseArray (NA -> 1.3.5 ) [CRAN] 2024-04-15T15:21:57.8977210Z DelayedArray (NA -> 0.29.9 ) [CRAN] 2024-04-15T15:21:57.8977788Z S4Arrays (NA -> 1.3.7 ) [CRAN] 2024-04-15T15:21:57.8978373Z MatrixGen... (NA -> 1.15.0 ) [CRAN] 2024-04-15T15:21:57.8978942Z snow (NA -> 0.4-4 ) [CRAN] 2024-04-15T15:21:57.8979496Z futile.lo... (NA -> 1.4.3 ) [CRAN] 2024-04-15T15:21:57.8980065Z Rhtslib (NA -> 2.99.3 ) [CRAN] 2024-04-15T15:21:57.8980646Z rjson (NA -> 0.2.21 ) [CRAN] 2024-04-15T15:21:57.8981225Z BiocParallel (NA -> 1.37.1 ) [CRAN] 2024-04-15T15:21:57.8981832Z Summarize... (NA -> 1.33.3 ) [CRAN] 2024-04-15T15:21:57.8982356Z restfulr (NA -> 0.0.15 ) [CRAN] 2024-04-15T15:21:57.8982976Z BiocIO (NA -> 1.13.0 ) [CRAN] 2024-04-15T15:21:57.8983584Z GenomicAl... (NA -> 1.39.5 ) [CRAN] 2024-04-15T15:21:57.8984151Z Rsamtools (NA -> 2.19.4 ) [CRAN] 2024-04-15T15:21:57.8984752Z rtracklayer (NA -> 1.63.2 ) [CRAN] 2024-04-15T15:21:57.8985346Z Annotatio... (NA -> 1.65.2 ) [CRAN] 2024-04-15T15:21:57.8985939Z GenomicRa... (NA -> 1.55.4 ) [CRAN] 2024-04-15T15:21:57.8986542Z sysfonts (NA -> 0.8.9 ) [CRAN] 2024-04-15T15:21:57.8987125Z colorspace (NA -> 2.1-0 ) [CRAN] 2024-04-15T15:21:57.8987713Z viridisLite (NA -> 0.4.2 ) [CRAN] 2024-04-15T15:21:57.8988319Z RColorBrewer (NA -> 1.1-3 ) [CRAN] 2024-04-15T15:21:57.8988929Z munsell (NA -> 0.5.1 ) [CRAN] 2024-04-15T15:21:57.8989496Z labeling (NA -> 0.4.3 ) [CRAN] 2024-04-15T15:21:57.8990358Z farver (NA -> 2.1.1 ) [CRAN] 2024-04-15T15:21:57.8990971Z iterators (NA -> 1.0.14 ) [CRAN] 2024-04-15T15:21:57.8991509Z foreach (NA -> 1.5.2 ) [CRAN] 2024-04-15T15:21:57.8992077Z GlobalOpt... (NA -> 0.1.2 ) [CRAN] 2024-04-15T15:21:57.8992647Z shape (NA -> 1.4.6.1) [CRAN] 2024-04-15T15:21:57.8992996Z scales (NA -> 1.3.0 ) [CRAN] 2024-04-15T15:21:57.8993341Z isoband (NA -> 0.2.7 ) [CRAN] 2024-04-15T15:21:57.8993811Z gtable (NA -> 0.3.4 ) [CRAN] 2024-04-15T15:21:57.8994410Z GenomicFe... (NA -> 1.55.4 ) [CRAN] 2024-04-15T15:21:57.8995008Z showtextdb (NA -> 3.0 ) [CRAN] 2024-04-15T15:21:57.8995582Z qpdf (NA -> 1.3.3 ) [CRAN] 2024-04-15T15:21:57.8996180Z doParallel (NA -> 1.0.17 ) [CRAN] 2024-04-15T15:21:57.8996741Z clue (NA -> 0.3-65 ) [CRAN] 2024-04-15T15:21:57.8997083Z GetoptLong (NA -> 1.0.5 ) [CRAN] 2024-04-15T15:21:57.8997506Z circlize (NA -> 0.4.16 ) [CRAN] 2024-04-15T15:21:57.8997838Z BSgenome (NA -> 1.71.4 ) [CRAN] 2024-04-15T15:21:57.8998403Z yulab.utils (NA -> 0.1.4 ) [CRAN] 2024-04-15T15:21:57.8998866Z gridGraphics (NA -> 0.5-1 ) [CRAN] 2024-04-15T15:21:57.8999911Z ggplot2 (NA -> 3.5.0 ) [CRAN] 2024-04-15T15:21:57.9000564Z TxDb.Hsap... (NA -> 3.2.2 ) [CRAN] 2024-04-15T15:21:57.9001011Z showtext (NA -> 0.9-7 ) [CRAN] 2024-04-15T15:21:57.9001363Z pdftools (NA -> 3.4.0 ) [CRAN] 2024-04-15T15:21:57.9001795Z plotgarde... (NA -> 1.9.0 ) [CRAN] 2024-04-15T15:21:57.9002190Z org.Hs.eg.db (NA -> 3.19.0 ) [CRAN] 2024-04-15T15:21:57.9002604Z Interacti... (NA -> 1.31.0 ) [CRAN] 2024-04-15T15:21:57.9002987Z ComplexHe... (NA -> 2.19.0 ) [CRAN] 2024-04-15T15:21:57.9003447Z BSgenome.... (NA -> 1.4.3 ) [CRAN] 2024-04-15T15:21:57.9003778Z Annotatio... (NA -> 3.11.4 ) [CRAN] 2024-04-15T15:21:57.9004107Z strawr (NA -> 0.0.91 ) [CRAN] 2024-04-15T15:21:57.9004429Z plyranges (NA -> 1.23.2 ) [CRAN] 2024-04-15T15:21:57.9004762Z ggplotify (NA -> 0.1.2 ) [CRAN] 2024-04-15T15:21:57.9005093Z data.table (NA -> 1.15.4 ) [CRAN] 2024-04-15T15:21:57.9008774Z Installing 70 packages: zlibbioc, GenomeInfoDbData, UCSC.utils, GenomeInfoDb, XVector, Biostrings, png, KEGGREST, S4Vectors, IRanges, formatR, abind, matrixStats, futile.options, lambda.r, SparseArray, DelayedArray, S4Arrays, MatrixGenerics, snow, futile.logger, Rhtslib, rjson, BiocParallel, SummarizedExperiment, restfulr, BiocIO, GenomicAlignments, Rsamtools, rtracklayer, AnnotationDbi, GenomicRanges, sysfonts, colorspace, viridisLite, RColorBrewer, munsell, labeling, farver, iterators, foreach, GlobalOptions, shape, scales, isoband, gtable, GenomicFeatures, showtextdb, qpdf, doParallel, clue, GetoptLong, circlize, BSgenome, yulab.utils, gridGraphics, ggplot2, TxDb.Hsapiens.UCSC.hg19.knownGene, showtext, pdftools, plotgardenerData, org.Hs.eg.db, InteractionSet, ComplexHeatmap, BSgenome.Hsapiens.UCSC.hg19, AnnotationHub, strawr, plyranges, ggplotify, data.table 2024-04-15T15:21:57.9012533Z Installing packages into ‘/__w/_temp/Library’ 2024-04-15T15:21:57.9012932Z (as ‘lib’ is unspecified) 2024-04-15T15:21:58.3911301Z Warning: unable to access index for repository https://bioconductordocker.blob.core.windows.net/packages/3.19/bioc/src/contrib: 2024-04-15T15:21:58.3912848Z cannot open URL 'https://bioconductordocker.blob.core.windows.net/packages/3.19/bioc/src/contrib/PACKAGES' 2024-04-15T15:21:59.2387252Z trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/zlibbioc_1.49.3.tar.gz' 2024-04-15T15:21:59.4915851Z Content type 'application/x-gzip' length 382660 bytes (373 KB) 2024-04-15T15:21:59.5124377Z ================================================== 2024-04-15T15:21:59.5125080Z downloaded 373 KB 2024-04-15T15:21:59.5125337Z 2024-04-15T15:21:59.5148618Z trying URL 'https://bioconductor.org/packages/3.19/data/annotation/src/contrib/GenomeInfoDbData_1.2.12.tar.gz' 2024-04-15T15:21:59.7680741Z Content type 'application/x-gzip' length 12558310 bytes (12.0 MB) 2024-04-15T15:21:59.8438976Z ================================================== 2024-04-15T15:21:59.8439669Z downloaded 12.0 MB 2024-04-15T15:21:59.8439940Z 2024-04-15T15:21:59.8462560Z trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/UCSC.utils_0.99.5.tar.gz' 2024-04-15T15:22:00.0998283Z Content type 'application/x-gzip' length 235727 bytes (230 KB) 2024-04-15T15:22:00.1180180Z ================================================== 2024-04-15T15:22:00.1180760Z downloaded 230 KB 2024-04-15T15:22:00.1180953Z 2024-04-15T15:22:00.1203650Z trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/GenomeInfoDb_1.39.13.tar.gz' 2024-04-15T15:22:00.3741493Z Content type 'application/x-gzip' length 3582427 bytes (3.4 MB) 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'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/png_0.1-8_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:22:01.2700444Z Content type 'application/gzip' length 59344 bytes (57 KB) 2024-04-15T15:22:01.2792706Z ================================================== 2024-04-15T15:22:01.2793268Z downloaded 57 KB 2024-04-15T15:22:01.2793494Z 2024-04-15T15:22:01.2826131Z trying URL 'https://bioconductor.org/packages/3.19/container-binaries/bioconductor_docker/src/contrib/KEGGREST_1.43.0_R_x86_64-pc-linux-gnu.tar.gz' 2024-04-15T15:22:01.7881912Z Content type 'application/gzip' length 193088 bytes (188 KB) 2024-04-15T15:22:01.8042707Z ================================================== 2024-04-15T15:22:01.8043312Z downloaded 188 KB 2024-04-15T15:22:01.8043595Z 2024-04-15T15:22:01.8075488Z trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/S4Vectors_0.41.6.tar.gz' 2024-04-15T15:22:01.9604085Z Content type 'application/x-gzip' length 881795 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2024-04-15T15:22:54.4776643Z trying URL 'https://cloud.r-project.org/src/contrib/data.table_1.15.4.tar.gz' 2024-04-15T15:22:54.5248097Z Content type 'application/x-gzip' length 5387593 bytes (5.1 MB) 2024-04-15T15:22:54.5735958Z ================================================== 2024-04-15T15:22:54.5736571Z downloaded 5.1 MB 2024-04-15T15:22:54.5736796Z 2024-04-15T15:22:54.8046451Z * installing *source* package ‘zlibbioc’ ... 2024-04-15T15:22:54.8047921Z ** using staged installation 2024-04-15T15:22:55.1910901Z configure: creating ./config.status 2024-04-15T15:22:55.2939618Z config.status: creating src/Makevars 2024-04-15T15:22:55.3345380Z ** libs 2024-04-15T15:22:55.3457853Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:22:55.3480921Z mkdir -p "/__w/_temp/Library/00LOCK-zlibbioc/00new/zlibbioc/include" 2024-04-15T15:22:55.3529037Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_zlibbioc.c -o R_init_zlibbioc.o 2024-04-15T15:22:55.3654023Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:22:55.3793018Z installing to /__w/_temp/Library/00LOCK-zlibbioc/00new/zlibbioc/libs 2024-04-15T15:22:55.3800730Z ** R 2024-04-15T15:22:55.3819990Z ** inst 2024-04-15T15:22:55.3837781Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:22:55.5719449Z ** help 2024-04-15T15:22:55.5806655Z *** installing help indices 2024-04-15T15:22:55.5902447Z ** building package indices 2024-04-15T15:22:55.7568359Z ** installing vignettes 2024-04-15T15:22:55.7603907Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:22:55.9138000Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:22:55.9253779Z ** testing if installed package can be loaded from final location 2024-04-15T15:22:56.0753935Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:22:56.0761738Z * DONE (zlibbioc) 2024-04-15T15:22:56.5599580Z * installing *source* package ‘GenomeInfoDbData’ ... 2024-04-15T15:22:56.5601302Z ** using staged installation 2024-04-15T15:22:56.5667319Z ** data 2024-04-15T15:22:56.5800864Z ** inst 2024-04-15T15:22:56.5808969Z ** help 2024-04-15T15:22:56.5878232Z *** installing help indices 2024-04-15T15:22:56.5959887Z ** building package indices 2024-04-15T15:22:56.7585616Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:22:56.9075656Z ** testing if installed package can be loaded from final location 2024-04-15T15:22:57.0625913Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:22:57.0632495Z * DONE (GenomeInfoDbData) 2024-04-15T15:22:57.2523038Z * installing *binary* package ‘png’ ... 2024-04-15T15:22:57.2571494Z * DONE (png) 2024-04-15T15:22:57.5842899Z * installing *source* package ‘S4Vectors’ ... 2024-04-15T15:22:57.5844447Z ** using staged installation 2024-04-15T15:22:57.5992412Z ** libs 2024-04-15T15:22:57.6113736Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:22:57.6137577Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c AEbufs.c -o AEbufs.o 2024-04-15T15:22:57.9563093Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DataFrame_class.c -o DataFrame_class.o 2024-04-15T15:22:57.9928238Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Hits_class.c -o Hits_class.o 2024-04-15T15:22:58.1349380Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LLint_class.c -o LLint_class.o 2024-04-15T15:22:58.3103458Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c List_class.c -o List_class.o 2024-04-15T15:22:58.3474342Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_S4Vectors.c -o R_init_S4Vectors.o 2024-04-15T15:22:58.4014449Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rle_class.c -o Rle_class.o 2024-04-15T15:22:58.6966882Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rle_utils.c -o Rle_utils.o 2024-04-15T15:22:58.9198624Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SEXP_utils.c -o SEXP_utils.o 2024-04-15T15:22:58.9537502Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SimpleList_class.c -o SimpleList_class.o 2024-04-15T15:22:58.9895012Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c anyMissing.c -o anyMissing.o 2024-04-15T15:22:59.0338571Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c character_utils.c -o character_utils.o 2024-04-15T15:22:59.1043510Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c eval_utils.c -o eval_utils.o 2024-04-15T15:22:59.1456107Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash_utils.c -o hash_utils.o 2024-04-15T15:22:59.1868901Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer_utils.c -o integer_utils.o 2024-04-15T15:22:59.4244858Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c logical_utils.c -o logical_utils.o 2024-04-15T15:22:59.4704967Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c map_ranges_to_runs.c -o map_ranges_to_runs.o 2024-04-15T15:22:59.6420304Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raw_utils.c -o raw_utils.o 2024-04-15T15:22:59.7472298Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c safe_arithm.c -o safe_arithm.o 2024-04-15T15:22:59.8101396Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sort_utils.c -o sort_utils.o 2024-04-15T15:23:00.0841357Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subsetting_utils.c -o subsetting_utils.o 2024-04-15T15:23:00.1646997Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vector_utils.c -o vector_utils.o 2024-04-15T15:23:00.2227441Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:23:00.2528404Z installing to /__w/_temp/Library/00LOCK-S4Vectors/00new/S4Vectors/libs 2024-04-15T15:23:00.2541338Z ** R 2024-04-15T15:23:00.2910072Z ** inst 2024-04-15T15:23:00.2967217Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:23:10.3155338Z in method for ‘normalizeSingleBracketReplacementValue’ with signature ‘"List"’: no definition for class “List” 2024-04-15T15:23:10.3156918Z Creating a new generic function for ‘unname’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3158039Z Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3159186Z Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3160002Z ** help 2024-04-15T15:23:10.3160813Z Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3162176Z in method for ‘coerce’ with signature ‘"Hits","DFrame"’: no definition for class “DFrame” 2024-04-15T15:23:10.3165374Z Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3166281Z Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3167062Z Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3167791Z Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3168555Z Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3169330Z Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3170071Z Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3170821Z Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3171581Z Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3172339Z Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3173671Z Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3174655Z Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3175390Z Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3176115Z Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3176847Z Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘S4Vectors’ 2024-04-15T15:23:10.3177673Z in method for ‘coerce’ with signature ‘"data.table","DFrame"’: no definition for class “data.table” 2024-04-15T15:23:10.3178528Z Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’ 2024-04-15T15:23:10.5062981Z *** installing help indices 2024-04-15T15:23:10.6497341Z ** building package indices 2024-04-15T15:23:10.9059033Z ** installing vignettes 2024-04-15T15:23:10.9134525Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:23:11.6191782Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:23:11.6328115Z ** testing if installed package can be loaded from final location 2024-04-15T15:23:12.5199642Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:23:12.5335939Z * DONE (S4Vectors) 2024-04-15T15:23:12.7399275Z * installing *binary* package ‘formatR’ ... 2024-04-15T15:23:12.7453109Z * DONE (formatR) 2024-04-15T15:23:12.9311057Z * installing *binary* package ‘abind’ ... 2024-04-15T15:23:12.9356275Z * DONE (abind) 2024-04-15T15:23:13.3067170Z * installing *source* package ‘matrixStats’ ... 2024-04-15T15:23:13.3198390Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2024-04-15T15:23:13.3199232Z ** using staged installation 2024-04-15T15:23:13.3330770Z ** libs 2024-04-15T15:23:13.3458264Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:23:13.3484093Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c 000.init.c -o 000.init.o 2024-04-15T15:23:13.3832381Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c allocMatrix2.c -o allocMatrix2.o 2024-04-15T15:23:13.4468463Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c anyMissing.c -o anyMissing.o 2024-04-15T15:23:13.5159708Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c binCounts.c -o binCounts.o 2024-04-15T15:23:13.5899153Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c binMeans.c -o binMeans.o 2024-04-15T15:23:13.6951719Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colCounts.c -o colCounts.o 2024-04-15T15:23:13.9205644Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colOrderStats.c -o colOrderStats.o 2024-04-15T15:23:14.0113571Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colRanges.c -o colRanges.o 2024-04-15T15:23:14.2439466Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c diff2.c -o diff2.o 2024-04-15T15:23:14.3403322Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c indexByRow.c -o indexByRow.o 2024-04-15T15:23:14.3890094Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c logSumExp.c -o logSumExp.o 2024-04-15T15:23:14.4797422Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mean2.c -o mean2.o 2024-04-15T15:23:14.5553028Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c naming.c -o naming.o 2024-04-15T15:23:14.6526046Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c productExpSumLog.c -o productExpSumLog.o 2024-04-15T15:23:14.7292527Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c psortKM.c -o psortKM.o 2024-04-15T15:23:14.7826038Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowCounts.c -o rowCounts.o 2024-04-15T15:23:14.9943938Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowCummaxs.c -o rowCummaxs.o 2024-04-15T15:23:15.1597294Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowCummins.c -o rowCummins.o 2024-04-15T15:23:15.3197930Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowCumprods.c -o rowCumprods.o 2024-04-15T15:23:15.4655926Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowCumsums.c -o rowCumsums.o 2024-04-15T15:23:15.6115888Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowDiffs.c -o rowDiffs.o 2024-04-15T15:23:15.8242746Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowLogSumExp.c -o rowLogSumExp.o 2024-04-15T15:23:15.9043528Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowMads.c -o rowMads.o 2024-04-15T15:23:16.0641081Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowMeans2.c -o rowMeans2.o 2024-04-15T15:23:16.2057804Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowMedians.c -o rowMedians.o 2024-04-15T15:23:16.3635875Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowOrderStats.c -o rowOrderStats.o 2024-04-15T15:23:16.4610665Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowRanges.c -o rowRanges.o 2024-04-15T15:23:16.6893066Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowRanksWithTies.c -o rowRanksWithTies.o 2024-04-15T15:23:18.0223229Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowSums2.c -o rowSums2.o 2024-04-15T15:23:18.1482194Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowVars.c -o rowVars.o 2024-04-15T15:23:18.2827281Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signTabulate.c -o signTabulate.o 2024-04-15T15:23:18.3489087Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sum2.c -o sum2.o 2024-04-15T15:23:18.4151947Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validateIndices.c -o validateIndices.o 2024-04-15T15:23:18.5696584Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c weightedMean.c -o weightedMean.o 2024-04-15T15:23:18.6552928Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c weightedMedian.c -o weightedMedian.o 2024-04-15T15:23:18.8008530Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c x_OP_y.c -o x_OP_y.o 2024-04-15T15:23:20.8073571Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:23:20.8426962Z installing to /__w/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2024-04-15T15:23:20.8444878Z ** R 2024-04-15T15:23:20.8582791Z ** inst 2024-04-15T15:23:20.8672762Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:23:22.1313328Z ** help 2024-04-15T15:23:22.2357470Z *** installing help indices 2024-04-15T15:23:22.3007097Z ** building package indices 2024-04-15T15:23:22.5271772Z ** installing vignettes 2024-04-15T15:23:22.5320388Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:23:22.7015031Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:23:22.7161375Z ** testing if installed package can be loaded from final location 2024-04-15T15:23:22.8890254Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:23:22.8917533Z * DONE (matrixStats) 2024-04-15T15:23:23.0837862Z * installing *binary* package ‘futile.options’ ... 2024-04-15T15:23:23.0879404Z * DONE (futile.options) 2024-04-15T15:23:23.2820340Z * installing *binary* package ‘snow’ ... 2024-04-15T15:23:23.2870669Z * DONE (snow) 2024-04-15T15:23:23.4961740Z * installing *binary* package ‘rjson’ ... 2024-04-15T15:23:23.5027354Z * DONE (rjson) 2024-04-15T15:23:23.7599883Z * installing *source* package ‘sysfonts’ ... 2024-04-15T15:23:23.7655500Z ** package ‘sysfonts’ successfully unpacked and MD5 sums checked 2024-04-15T15:23:23.7656625Z ** using staged installation 2024-04-15T15:23:24.1510799Z checking for gcc... gcc 2024-04-15T15:23:24.2083015Z checking whether the C compiler works... yes 2024-04-15T15:23:24.2083570Z checking for C compiler default output file name... a.out 2024-04-15T15:23:24.2412338Z checking for suffix of executables... 2024-04-15T15:23:24.2826969Z checking whether we are cross compiling... no 2024-04-15T15:23:24.3030365Z checking for suffix of object files... o 2024-04-15T15:23:24.3211222Z checking whether we are using the GNU C compiler... yes 2024-04-15T15:23:24.3380907Z checking whether gcc accepts -g... yes 2024-04-15T15:23:24.3680075Z checking for gcc option to accept ISO C89... none needed 2024-04-15T15:23:24.3683371Z checking for pkg-config... /usr/bin/pkg-config 2024-04-15T15:23:24.3701782Z checking whether pkg-config could find zlib... yes 2024-04-15T15:23:24.3750575Z checking whether pkg-config could find libpng... yes 2024-04-15T15:23:24.3802334Z checking whether pkg-config could find freetype2... yes 2024-04-15T15:23:24.4221038Z checking whether freetype2 flags work... yes 2024-04-15T15:23:24.4390928Z configure: creating ./config.status 2024-04-15T15:23:24.5154931Z config.status: creating src/Makevars 2024-04-15T15:23:24.5533543Z ** libs 2024-04-15T15:23:24.5645500Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:23:24.5672688Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c font_name.c -o font_name.o 2024-04-15T15:23:24.6297804Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register_routines.c -o register_routines.o 2024-04-15T15:23:24.6756195Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sysfonts.c -o sysfonts.o 2024-04-15T15:23:24.7284661Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o sysfonts.so font_name.o register_routines.o sysfonts.o -lfreetype -lpng16 -lz -lz -L/usr/local/lib/R/lib -lR 2024-04-15T15:23:24.7516560Z installing to /__w/_temp/Library/00LOCK-sysfonts/00new/sysfonts/libs 2024-04-15T15:23:24.7524422Z ** R 2024-04-15T15:23:24.7560869Z ** inst 2024-04-15T15:23:24.7603693Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:23:25.0333646Z ** help 2024-04-15T15:23:25.0510388Z *** installing help indices 2024-04-15T15:23:25.0684047Z ** building package indices 2024-04-15T15:23:25.2447973Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:23:25.4220339Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:23:25.4337653Z ** testing if installed package can be loaded from final location 2024-04-15T15:23:25.6060038Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:23:25.6069895Z * DONE (sysfonts) 2024-04-15T15:23:25.9750078Z * installing *binary* package ‘colorspace’ ... 2024-04-15T15:23:25.9941017Z * DONE (colorspace) 2024-04-15T15:23:26.2190369Z * installing *binary* package ‘viridisLite’ ... 2024-04-15T15:23:26.2249899Z * DONE (viridisLite) 2024-04-15T15:23:26.4062413Z * installing *binary* package ‘RColorBrewer’ ... 2024-04-15T15:23:26.4105192Z * DONE (RColorBrewer) 2024-04-15T15:23:26.5912213Z * installing *binary* package ‘labeling’ ... 2024-04-15T15:23:26.5955046Z * DONE (labeling) 2024-04-15T15:23:26.9559748Z * installing *binary* package ‘farver’ ... 2024-04-15T15:23:26.9674321Z * DONE (farver) 2024-04-15T15:23:27.1787783Z * installing *binary* package ‘iterators’ ... 2024-04-15T15:23:27.1850600Z * DONE (iterators) 2024-04-15T15:23:27.4028900Z * installing *binary* package ‘GlobalOptions’ ... 2024-04-15T15:23:27.4087113Z * DONE (GlobalOptions) 2024-04-15T15:23:27.6280461Z * installing *source* package ‘shape’ ... 2024-04-15T15:23:27.6315787Z ** package ‘shape’ successfully unpacked and MD5 sums checked 2024-04-15T15:23:27.6316741Z ** using staged installation 2024-04-15T15:23:27.6391252Z ** R 2024-04-15T15:23:27.6440628Z ** demo 2024-04-15T15:23:27.6446692Z ** inst 2024-04-15T15:23:27.6464205Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:23:28.1656517Z ** help 2024-04-15T15:23:28.2242263Z *** installing help indices 2024-04-15T15:23:28.2618024Z ** building package indices 2024-04-15T15:23:28.4624619Z ** installing vignettes 2024-04-15T15:23:28.4664233Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:23:28.6253155Z ** testing if installed package can be loaded from final location 2024-04-15T15:23:28.7872629Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:23:28.7882800Z * DONE (shape) 2024-04-15T15:23:29.0679883Z * installing *binary* package ‘isoband’ ... 2024-04-15T15:23:29.0762493Z * DONE (isoband) 2024-04-15T15:23:29.2811434Z * installing *binary* package ‘gtable’ ... 2024-04-15T15:23:29.2868949Z * DONE (gtable) 2024-04-15T15:23:29.5731079Z * installing *source* package ‘qpdf’ ... 2024-04-15T15:23:29.5808410Z ** package ‘qpdf’ successfully unpacked and MD5 sums checked 2024-04-15T15:23:29.5810014Z ** using staged installation 2024-04-15T15:23:29.8054775Z Using bundled qpdf (recommended) 2024-04-15T15:23:29.8222678Z ** libs 2024-04-15T15:23:29.8338742Z using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:23:29.8363107Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o 2024-04-15T15:23:33.2179117Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bindings.cpp -o bindings.o 2024-04-15T15:23:36.8371443Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/BitStream.cc -o libqpdf/BitStream.o 2024-04-15T15:23:37.1611295Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/BitWriter.cc -o libqpdf/BitWriter.o 2024-04-15T15:23:37.4745980Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Buffer.cc -o libqpdf/Buffer.o 2024-04-15T15:23:37.5238011Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/BufferInputSource.cc -o libqpdf/BufferInputSource.o 2024-04-15T15:23:37.8982220Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/ClosedFileInputSource.cc -o libqpdf/ClosedFileInputSource.o 2024-04-15T15:23:38.1474846Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/ContentNormalizer.cc -o libqpdf/ContentNormalizer.o 2024-04-15T15:23:38.4895155Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/FileInputSource.cc -o libqpdf/FileInputSource.o 2024-04-15T15:23:38.9685411Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/InputSource.cc -o libqpdf/InputSource.o 2024-04-15T15:23:39.2053381Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/InsecureRandomDataProvider.cc -o libqpdf/InsecureRandomDataProvider.o 2024-04-15T15:23:39.4280126Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/JSON.cc -o libqpdf/JSON.o 2024-04-15T15:23:40.4686019Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/MD5.cc -o libqpdf/MD5.o 2024-04-15T15:23:40.8367499Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/OffsetInputSource.cc -o libqpdf/OffsetInputSource.o 2024-04-15T15:23:41.1235999Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pipeline.cc -o libqpdf/Pipeline.o 2024-04-15T15:23:41.3518021Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_AES_PDF.cc -o libqpdf/Pl_AES_PDF.o 2024-04-15T15:23:41.6274568Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_ASCII85Decoder.cc -o libqpdf/Pl_ASCII85Decoder.o 2024-04-15T15:23:41.8437712Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_ASCIIHexDecoder.cc -o libqpdf/Pl_ASCIIHexDecoder.o 2024-04-15T15:23:42.0793477Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_Buffer.cc -o libqpdf/Pl_Buffer.o 2024-04-15T15:23:42.4833330Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_Concatenate.cc -o libqpdf/Pl_Concatenate.o 2024-04-15T15:23:42.6693292Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_Count.cc -o libqpdf/Pl_Count.o 2024-04-15T15:23:42.8587964Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_DCT.cc -o libqpdf/Pl_DCT.o 2024-04-15T15:23:43.1832971Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_Discard.cc -o libqpdf/Pl_Discard.o 2024-04-15T15:23:43.3627226Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_Flate.cc -o libqpdf/Pl_Flate.o 2024-04-15T15:23:43.7103204Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_LZWDecoder.cc -o libqpdf/Pl_LZWDecoder.o 2024-04-15T15:23:44.0733331Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_MD5.cc -o libqpdf/Pl_MD5.o 2024-04-15T15:23:44.2816821Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_PNGFilter.cc -o libqpdf/Pl_PNGFilter.o 2024-04-15T15:23:44.5268686Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_QPDFTokenizer.cc -o libqpdf/Pl_QPDFTokenizer.o 2024-04-15T15:23:44.9519439Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_RC4.cc -o libqpdf/Pl_RC4.o 2024-04-15T15:23:45.1996410Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_RunLength.cc -o libqpdf/Pl_RunLength.o 2024-04-15T15:23:45.4519947Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_SHA2.cc -o libqpdf/Pl_SHA2.o 2024-04-15T15:23:45.7372982Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_StdioFile.cc -o libqpdf/Pl_StdioFile.o 2024-04-15T15:23:45.9856511Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/Pl_TIFFPredictor.cc -o libqpdf/Pl_TIFFPredictor.o 2024-04-15T15:23:46.2584346Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Array.cc -o libqpdf/QPDF_Array.o 2024-04-15T15:23:46.7950347Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Bool.cc -o libqpdf/QPDF_Bool.o 2024-04-15T15:23:47.0788674Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Dictionary.cc -o libqpdf/QPDF_Dictionary.o 2024-04-15T15:23:47.8408581Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_encryption.cc -o libqpdf/QPDF_encryption.o 2024-04-15T15:23:50.3627898Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_InlineImage.cc -o libqpdf/QPDF_InlineImage.o 2024-04-15T15:23:50.6671133Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Integer.cc -o libqpdf/QPDF_Integer.o 2024-04-15T15:23:50.9440017Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_linearization.cc -o libqpdf/QPDF_linearization.o 2024-04-15T15:23:54.6911543Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Name.cc -o libqpdf/QPDF_Name.o 2024-04-15T15:23:55.0413707Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Null.cc -o libqpdf/QPDF_Null.o 2024-04-15T15:23:55.3148382Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Operator.cc -o libqpdf/QPDF_Operator.o 2024-04-15T15:23:55.6175881Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_optimization.cc -o libqpdf/QPDF_optimization.o 2024-04-15T15:23:57.6201051Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_pages.cc -o libqpdf/QPDF_pages.o 2024-04-15T15:23:58.7960210Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Real.cc -o libqpdf/QPDF_Real.o 2024-04-15T15:23:59.1042633Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Reserved.cc -o libqpdf/QPDF_Reserved.o 2024-04-15T15:23:59.3754381Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_Stream.cc -o libqpdf/QPDF_Stream.o 2024-04-15T15:24:01.4976420Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF_String.cc -o libqpdf/QPDF_String.o 2024-04-15T15:24:01.8807729Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/qpdf-c.cc -o libqpdf/qpdf-c.o 2024-04-15T15:24:02.9286352Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDF.cc -o libqpdf/QPDF.o 2024-04-15T15:24:07.6654463Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFAcroFormDocumentHelper.cc -o libqpdf/QPDFAcroFormDocumentHelper.o 2024-04-15T15:24:09.3600424Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFAnnotationObjectHelper.cc -o libqpdf/QPDFAnnotationObjectHelper.o 2024-04-15T15:24:10.1562241Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFExc.cc -o libqpdf/QPDFExc.o 2024-04-15T15:24:10.4360053Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFFormFieldObjectHelper.cc -o libqpdf/QPDFFormFieldObjectHelper.o 2024-04-15T15:24:12.5696313Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFMatrix.cc -o libqpdf/QPDFMatrix.o 2024-04-15T15:24:13.1151294Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFNameTreeObjectHelper.cc -o libqpdf/QPDFNameTreeObjectHelper.o 2024-04-15T15:24:13.7844874Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFNumberTreeObjectHelper.cc -o libqpdf/QPDFNumberTreeObjectHelper.o 2024-04-15T15:24:14.6122201Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFObject.cc -o libqpdf/QPDFObject.o 2024-04-15T15:24:14.8811800Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFObjectHandle.cc -o libqpdf/QPDFObjectHandle.o 2024-04-15T15:24:17.9469379Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFObjGen.cc -o libqpdf/QPDFObjGen.o 2024-04-15T15:24:17.9696349Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFOutlineDocumentHelper.cc -o libqpdf/QPDFOutlineDocumentHelper.o 2024-04-15T15:24:19.0459724Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFOutlineObjectHelper.cc -o libqpdf/QPDFOutlineObjectHelper.o 2024-04-15T15:24:19.9225885Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFPageDocumentHelper.cc -o libqpdf/QPDFPageDocumentHelper.o 2024-04-15T15:24:21.1166891Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFPageLabelDocumentHelper.cc -o libqpdf/QPDFPageLabelDocumentHelper.o 2024-04-15T15:24:22.1219343Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFPageObjectHelper.cc -o libqpdf/QPDFPageObjectHelper.o 2024-04-15T15:24:24.1193275Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFSystemError.cc -o libqpdf/QPDFSystemError.o 2024-04-15T15:24:24.3900396Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFTokenizer.cc -o libqpdf/QPDFTokenizer.o 2024-04-15T15:24:25.2492555Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFWriter.cc -o libqpdf/QPDFWriter.o 2024-04-15T15:24:29.4253706Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QPDFXRefEntry.cc -o libqpdf/QPDFXRefEntry.o 2024-04-15T15:24:29.6688013Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QTC.cc -o libqpdf/QTC.o 2024-04-15T15:24:30.1030211Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/QUtil.cc -o libqpdf/QUtil.o 2024-04-15T15:24:31.4305710Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/RC4.cc -o libqpdf/RC4.o 2024-04-15T15:24:31.4650548Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/rijndael.cc -o libqpdf/rijndael.o 2024-04-15T15:24:31.6848737Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/SecureRandomDataProvider.cc -o libqpdf/SecureRandomDataProvider.o 2024-04-15T15:24:31.9435183Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/sha2.c -o libqpdf/sha2.o 2024-04-15T15:24:32.3531322Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libqpdf/sha2big.c -o libqpdf/sha2big.o 2024-04-15T15:24:32.4852250Z ar rcs libqpdf/libstatqpdf.a libqpdf/BitStream.o libqpdf/BitWriter.o libqpdf/Buffer.o libqpdf/BufferInputSource.o libqpdf/ClosedFileInputSource.o libqpdf/ContentNormalizer.o libqpdf/FileInputSource.o libqpdf/InputSource.o libqpdf/InsecureRandomDataProvider.o libqpdf/JSON.o libqpdf/MD5.o libqpdf/OffsetInputSource.o libqpdf/Pipeline.o libqpdf/Pl_AES_PDF.o libqpdf/Pl_ASCII85Decoder.o libqpdf/Pl_ASCIIHexDecoder.o libqpdf/Pl_Buffer.o libqpdf/Pl_Concatenate.o libqpdf/Pl_Count.o libqpdf/Pl_DCT.o libqpdf/Pl_Discard.o libqpdf/Pl_Flate.o libqpdf/Pl_LZWDecoder.o libqpdf/Pl_MD5.o libqpdf/Pl_PNGFilter.o libqpdf/Pl_QPDFTokenizer.o libqpdf/Pl_RC4.o libqpdf/Pl_RunLength.o libqpdf/Pl_SHA2.o libqpdf/Pl_StdioFile.o libqpdf/Pl_TIFFPredictor.o libqpdf/QPDF_Array.o libqpdf/QPDF_Bool.o libqpdf/QPDF_Dictionary.o libqpdf/QPDF_encryption.o libqpdf/QPDF_InlineImage.o libqpdf/QPDF_Integer.o libqpdf/QPDF_linearization.o libqpdf/QPDF_Name.o libqpdf/QPDF_Null.o libqpdf/QPDF_Operator.o libqpdf/QPDF_optimization.o libqpdf/QPDF_pages.o libqpdf/QPDF_Real.o libqpdf/QPDF_Reserved.o libqpdf/QPDF_Stream.o libqpdf/QPDF_String.o libqpdf/qpdf-c.o libqpdf/QPDF.o libqpdf/QPDFAcroFormDocumentHelper.o libqpdf/QPDFAnnotationObjectHelper.o libqpdf/QPDFExc.o libqpdf/QPDFFormFieldObjectHelper.o libqpdf/QPDFMatrix.o libqpdf/QPDFNameTreeObjectHelper.o libqpdf/QPDFNumberTreeObjectHelper.o libqpdf/QPDFObject.o libqpdf/QPDFObjectHandle.o libqpdf/QPDFObjGen.o libqpdf/QPDFOutlineDocumentHelper.o libqpdf/QPDFOutlineObjectHelper.o libqpdf/QPDFPageDocumentHelper.o libqpdf/QPDFPageLabelDocumentHelper.o libqpdf/QPDFPageObjectHelper.o libqpdf/QPDFSystemError.o libqpdf/QPDFTokenizer.o libqpdf/QPDFWriter.o libqpdf/QPDFXRefEntry.o libqpdf/QTC.o libqpdf/QUtil.o libqpdf/RC4.o libqpdf/rijndael.o libqpdf/SecureRandomDataProvider.o libqpdf/sha2.o libqpdf/sha2big.o 2024-04-15T15:24:32.7246589Z g++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o qpdf.so RcppExports.o bindings.o -Llibqpdf -lstatqpdf -ljpeg -lz -L/usr/local/lib/R/lib -lR 2024-04-15T15:24:33.0067862Z installing to /__w/_temp/Library/00LOCK-qpdf/00new/qpdf/libs 2024-04-15T15:24:33.0288675Z ** R 2024-04-15T15:24:33.0312305Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:24:33.3036550Z ** help 2024-04-15T15:24:33.3113204Z *** installing help indices 2024-04-15T15:24:33.3201155Z ** building package indices 2024-04-15T15:24:33.4803264Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:24:33.7142347Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:24:33.8107140Z ** testing if installed package can be loaded from final location 2024-04-15T15:24:34.0268290Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:24:34.0273928Z * DONE (qpdf) 2024-04-15T15:24:34.2853265Z * installing *binary* package ‘clue’ ... 2024-04-15T15:24:34.2920145Z * DONE (clue) 2024-04-15T15:24:34.4758294Z * installing *binary* package ‘yulab.utils’ ... 2024-04-15T15:24:34.4804858Z * DONE (yulab.utils) 2024-04-15T15:24:34.7045963Z * installing *binary* package ‘gridGraphics’ ... 2024-04-15T15:24:34.7135683Z * DONE (gridGraphics) 2024-04-15T15:24:34.9782240Z * installing *binary* package ‘plotgardenerData’ ... 2024-04-15T15:24:34.9867618Z * DONE (plotgardenerData) 2024-04-15T15:24:35.2677818Z * installing *binary* package ‘strawr’ ... 2024-04-15T15:24:35.2755106Z * DONE (strawr) 2024-04-15T15:24:36.0265995Z * installing *source* package ‘data.table’ ... 2024-04-15T15:24:36.0652452Z ** package ‘data.table’ successfully unpacked and MD5 sums checked 2024-04-15T15:24:36.3464835Z ** using staged installation 2024-04-15T15:24:36.3465474Z gcc 11.4.0 2024-04-15T15:24:36.3524755Z zlib 1.2.11 is available ok 2024-04-15T15:24:36.4603940Z R CMD SHLIB supports OpenMP without any extra hint 2024-04-15T15:24:36.4975730Z ** libs 2024-04-15T15:24:36.5101266Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:24:36.5125907Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c assign.c -o assign.o 2024-04-15T15:24:37.5338768Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c between.c -o between.o 2024-04-15T15:24:37.7481130Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bmerge.c -o bmerge.o 2024-04-15T15:24:38.1610298Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chmatch.c -o chmatch.o 2024-04-15T15:24:38.2638200Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cj.c -o cj.o 2024-04-15T15:24:38.3795672Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coalesce.c -o coalesce.o 2024-04-15T15:24:38.5175202Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dogroups.c -o dogroups.o 2024-04-15T15:24:38.8185504Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fastmean.c -o fastmean.o 2024-04-15T15:24:38.8901936Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fcast.c -o fcast.o 2024-04-15T15:24:38.9783719Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fifelse.c -o fifelse.o 2024-04-15T15:24:39.2028778Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmelt.c -o fmelt.o 2024-04-15T15:24:39.5861943Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c forder.c -o forder.o 2024-04-15T15:24:40.2709343Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c frank.c -o frank.o 2024-04-15T15:24:40.4105675Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fread.c -o fread.o 2024-04-15T15:24:41.5485021Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c freadR.c -o freadR.o 2024-04-15T15:24:41.8259962Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c froll.c -o froll.o 2024-04-15T15:24:42.0750390Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c frollR.c -o frollR.o 2024-04-15T15:24:42.2388122Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c frolladaptive.c -o frolladaptive.o 2024-04-15T15:24:42.4545673Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fsort.c -o fsort.o 2024-04-15T15:24:42.6243901Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fwrite.c -o fwrite.o 2024-04-15T15:24:42.9829098Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fwriteR.c -o fwriteR.o 2024-04-15T15:24:43.1114367Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gsumm.c -o gsumm.o 2024-04-15T15:24:44.1868527Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idatetime.c -o idatetime.o 2024-04-15T15:24:44.2704287Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ijoin.c -o ijoin.o 2024-04-15T15:24:44.6019008Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o 2024-04-15T15:24:44.6773890Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inrange.c -o inrange.o 2024-04-15T15:24:44.7251101Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nafill.c -o nafill.o 2024-04-15T15:24:44.8917947Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c negate.c -o negate.o 2024-04-15T15:24:44.9380976Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nqrecreateindices.c -o nqrecreateindices.o 2024-04-15T15:24:44.9897499Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c openmp-utils.c -o openmp-utils.o 2024-04-15T15:24:45.0746456Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c programming.c -o programming.o 2024-04-15T15:24:45.1254542Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c quickselect.c -o quickselect.o 2024-04-15T15:24:45.2183274Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbindlist.c -o rbindlist.o 2024-04-15T15:24:45.5553755Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reorder.c -o reorder.o 2024-04-15T15:24:45.6645999Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shift.c -o shift.o 2024-04-15T15:24:45.8313939Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c snprintf.c -o snprintf.o 2024-04-15T15:24:45.9384558Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o 2024-04-15T15:24:46.1903258Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose.c -o transpose.o 2024-04-15T15:24:46.2763651Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c types.c -o types.o 2024-04-15T15:24:46.3585408Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uniqlist.c -o uniqlist.o 2024-04-15T15:24:46.6074303Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o 2024-04-15T15:24:46.7828139Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vecseq.c -o vecseq.o 2024-04-15T15:24:46.8426515Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wrappers.c -o wrappers.o 2024-04-15T15:24:46.9181810Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz -L/usr/local/lib/R/lib -lR 2024-04-15T15:24:46.9667205Z PKG_CFLAGS = -fopenmp 2024-04-15T15:24:46.9680961Z PKG_LIBS = -fopenmp -lz 2024-04-15T15:24:46.9683370Z if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi 2024-04-15T15:24:46.9717195Z if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi 2024-04-15T15:24:46.9749343Z installing to /__w/_temp/Library/00LOCK-data.table/00new/data.table/libs 2024-04-15T15:24:46.9776306Z ** R 2024-04-15T15:24:47.0039727Z ** inst 2024-04-15T15:24:47.0175896Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:24:51.7076498Z ** help 2024-04-15T15:24:51.9445637Z *** installing help indices 2024-04-15T15:24:52.1073470Z ** building package indices 2024-04-15T15:24:52.3861340Z ** installing vignettes 2024-04-15T15:24:52.3928662Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:24:52.6104968Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:24:52.6271634Z ** testing if installed package can be loaded from final location 2024-04-15T15:24:52.9807773Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:24:52.9867602Z * DONE (data.table) 2024-04-15T15:24:53.2151429Z * installing *source* package ‘UCSC.utils’ ... 2024-04-15T15:24:53.2153228Z ** using staged installation 2024-04-15T15:24:53.2257689Z ** R 2024-04-15T15:24:53.2307718Z ** inst 2024-04-15T15:24:53.2325827Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:24:54.1196301Z ** help 2024-04-15T15:24:54.1410252Z *** installing help indices 2024-04-15T15:24:54.1553419Z ** building package indices 2024-04-15T15:24:54.3204757Z ** installing vignettes 2024-04-15T15:24:54.3244887Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:24:55.0239742Z ** testing if installed package can be loaded from final location 2024-04-15T15:24:55.7175636Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:24:55.7184666Z * DONE (UCSC.utils) 2024-04-15T15:24:56.0313807Z * installing *binary* package ‘IRanges’ ... 2024-04-15T15:24:56.0423658Z * DONE (IRanges) 2024-04-15T15:24:56.2298973Z * installing *binary* package ‘lambda.r’ ... 2024-04-15T15:24:56.2341941Z * DONE (lambda.r) 2024-04-15T15:24:56.4407956Z * installing *binary* package ‘MatrixGenerics’ ... 2024-04-15T15:24:56.4459594Z * DONE (MatrixGenerics) 2024-04-15T15:24:57.3610408Z * installing *source* package ‘Rhtslib’ ... 2024-04-15T15:24:57.3614005Z ** using non-staged installation via StagedInstall field 2024-04-15T15:24:57.3721330Z ** libs 2024-04-15T15:24:57.3851775Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:24:57.3883254Z cd "htslib-1.18" && make -f "Makefile.Rhtslib" 2024-04-15T15:24:57.3908503Z make[1]: Entering directory '/tmp/RtmpbjwbvN/R.INSTALL13c273fead33/Rhtslib/src/htslib-1.18' 2024-04-15T15:24:57.5651244Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.c 2024-04-15T15:24:57.6594288Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.c 2024-04-15T15:24:57.8297480Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.c 2024-04-15T15:24:58.2736831Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.c 2024-04-15T15:24:58.8847488Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.c 2024-04-15T15:24:59.0150073Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.c 2024-04-15T15:24:59.4278152Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o header.o header.c 2024-04-15T15:25:00.3415418Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.c 2024-04-15T15:25:00.6686258Z echo '#define HTS_VERSION_TEXT "1.18"' > version.h 2024-04-15T15:25:00.6698242Z printf '#define HTS_CC "%s"\n#define HTS_CPPFLAGS "%s"\n#define HTS_CFLAGS "%s"\n#define HTS_LDFLAGS "%s"\n#define HTS_LIBS "%s"\n' \ 2024-04-15T15:25:00.6699488Z 'gcc' \ 2024-04-15T15:25:00.6700001Z '-I/usr/local/include -D_FILE_OFFSET_BITS=64' \ 2024-04-15T15:25:00.6702978Z '-g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden' \ 2024-04-15T15:25:00.6704301Z '-L/usr/local/lib -fvisibility=hidden' \ 2024-04-15T15:25:00.6704992Z '-lz -lm -lbz2 -llzma -lcurl' > config_vars.h 2024-04-15T15:25:00.6720382Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.c 2024-04-15T15:25:02.2632704Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_expr.o hts_expr.c 2024-04-15T15:25:02.5848017Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.c 2024-04-15T15:25:02.6174748Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.c 2024-04-15T15:25:02.7230075Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.c 2024-04-15T15:25:02.8253603Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.c 2024-04-15T15:25:02.9663109Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.c 2024-04-15T15:25:03.1384055Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.c 2024-04-15T15:25:03.4294095Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o region.o region.c 2024-04-15T15:25:03.5548268Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.o sam.c 2024-04-15T15:25:05.8964821Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam_mods.o sam_mods.c 2024-04-15T15:25:06.0547925Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.o synced_bcf_reader.c 2024-04-15T15:25:06.5887269Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.o vcf_sweep.c 2024-04-15T15:25:06.6558824Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.o tbx.c 2024-04-15T15:25:06.8191460Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.o textutils.c 2024-04-15T15:25:07.0038717Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.o thread_pool.c 2024-04-15T15:25:07.1826649Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.o vcf.c 2024-04-15T15:25:09.8621980Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.o vcfutils.c 2024-04-15T15:25:10.4276016Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.o cram/cram_codecs.c 2024-04-15T15:25:11.5045288Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.o cram/cram_decode.c 2024-04-15T15:25:12.6273101Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.o cram/cram_encode.c 2024-04-15T15:25:14.0410618Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.o cram/cram_external.c 2024-04-15T15:25:14.2570133Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.o cram/cram_index.c 2024-04-15T15:25:14.5300793Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.o cram/cram_io.c 2024-04-15T15:25:15.9398449Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.o cram/cram_stats.c 2024-04-15T15:25:16.0785639Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.o cram/mFILE.c 2024-04-15T15:25:16.2000084Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.o cram/open_trace_file.c 2024-04-15T15:25:16.3064250Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.o cram/pooled_alloc.c 2024-04-15T15:25:16.3436116Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.o cram/string_alloc.c 2024-04-15T15:25:16.3841660Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c 2024-04-15T15:25:17.0435157Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c 2024-04-15T15:25:17.8586300Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c 2024-04-15T15:25:17.8729166Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c 2024-04-15T15:25:18.0015622Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c 2024-04-15T15:25:18.9015108Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c 2024-04-15T15:25:18.9128855Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c 2024-04-15T15:25:18.9231578Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c 2024-04-15T15:25:18.9336518Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c 2024-04-15T15:25:18.9446474Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c 2024-04-15T15:25:19.5432989Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c 2024-04-15T15:25:19.9277159Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c 2024-04-15T15:25:20.0116247Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c 2024-04-15T15:25:20.5272077Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c 2024-04-15T15:25:20.5818934Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.o hfile_libcurl.c 2024-04-15T15:25:21.0518468Z ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o 2024-04-15T15:25:21.0986943Z ranlib libhts.a 2024-04-15T15:25:21.1445297Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.pico kfunc.c 2024-04-15T15:25:21.2385128Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.pico kstring.c 2024-04-15T15:25:21.4076396Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.pico bcf_sr_sort.c 2024-04-15T15:25:21.8492779Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.pico bgzf.c 2024-04-15T15:25:22.4669944Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.pico errmod.c 2024-04-15T15:25:22.5971041Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.pico faidx.c 2024-04-15T15:25:23.0107893Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o header.pico header.c 2024-04-15T15:25:23.9274630Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.pico hfile.c 2024-04-15T15:25:24.2529154Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.pico hts.c 2024-04-15T15:25:25.8598169Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_expr.pico hts_expr.c 2024-04-15T15:25:26.1863113Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.pico hts_os.c 2024-04-15T15:25:26.2193883Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.pico md5.c 2024-04-15T15:25:26.3451331Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.pico multipart.c 2024-04-15T15:25:26.4543545Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.pico probaln.c 2024-04-15T15:25:26.5966107Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.pico realn.c 2024-04-15T15:25:26.7701972Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.pico regidx.c 2024-04-15T15:25:27.0622927Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o region.pico region.c 2024-04-15T15:25:27.1901858Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.pico sam.c 2024-04-15T15:25:29.5060840Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam_mods.pico sam_mods.c 2024-04-15T15:25:29.6648985Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.pico synced_bcf_reader.c 2024-04-15T15:25:30.1951676Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.pico vcf_sweep.c 2024-04-15T15:25:30.2632066Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.pico tbx.c 2024-04-15T15:25:30.4222075Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.pico textutils.c 2024-04-15T15:25:30.6068655Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.pico thread_pool.c 2024-04-15T15:25:30.7850187Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.pico vcf.c 2024-04-15T15:25:33.4580339Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.pico vcfutils.c 2024-04-15T15:25:34.0244499Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.pico cram/cram_codecs.c 2024-04-15T15:25:35.1028823Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.pico cram/cram_decode.c 2024-04-15T15:25:36.2257106Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.pico cram/cram_encode.c 2024-04-15T15:25:37.6416878Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.pico cram/cram_external.c 2024-04-15T15:25:37.8595529Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.pico cram/cram_index.c 2024-04-15T15:25:38.1319015Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.pico cram/cram_io.c 2024-04-15T15:25:39.5390283Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.pico cram/cram_stats.c 2024-04-15T15:25:39.6790120Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.pico cram/mFILE.c 2024-04-15T15:25:39.8015511Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.pico cram/open_trace_file.c 2024-04-15T15:25:39.9080522Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.pico cram/pooled_alloc.c 2024-04-15T15:25:39.9452043Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.pico cram/string_alloc.c 2024-04-15T15:25:39.9855784Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/arith_dynamic.c 2024-04-15T15:25:40.6332695Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/fqzcomp_qual.c 2024-04-15T15:25:41.4380926Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/htscodecs.c 2024-04-15T15:25:41.4525145Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/pack.pico htscodecs/htscodecs/pack.c 2024-04-15T15:25:41.5806631Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static4x16pr.c 2024-04-15T15:25:42.4852144Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.pico htscodecs/htscodecs/rANS_static32x16pr_avx2.c 2024-04-15T15:25:42.4965929Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.pico htscodecs/htscodecs/rANS_static32x16pr_avx512.c 2024-04-15T15:25:42.5071452Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.pico htscodecs/htscodecs/rANS_static32x16pr_sse4.c 2024-04-15T15:25:42.5178543Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.pico htscodecs/htscodecs/rANS_static32x16pr_neon.c 2024-04-15T15:25:42.5289711Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static32x16pr.pico htscodecs/htscodecs/rANS_static32x16pr.c 2024-04-15T15:25:43.1306793Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rANS_static.c 2024-04-15T15:25:43.5192740Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rle.pico htscodecs/htscodecs/rle.c 2024-04-15T15:25:43.6033972Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/tokenise_name3.c 2024-04-15T15:25:44.1191834Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/utils.pico htscodecs/htscodecs/utils.c 2024-04-15T15:25:44.1729066Z gcc -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.pico hfile_libcurl.c 2024-04-15T15:25:44.6386015Z gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -L/usr/local/lib -fvisibility=hidden -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/pack.pico htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static32x16pr_avx2.pico htscodecs/htscodecs/rANS_static32x16pr_avx512.pico htscodecs/htscodecs/rANS_static32x16pr_sse4.pico htscodecs/htscodecs/rANS_static32x16pr_neon.pico htscodecs/htscodecs/rANS_static32x16pr.pico htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rle.pico htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/utils.pico hfile_libcurl.pico -lz -lm -lbz2 -llzma -lcurl -lpthread 2024-04-15T15:25:44.7110270Z ln -sf libhts.so libhts.so.3 2024-04-15T15:25:44.7119900Z make[1]: Leaving directory '/tmp/RtmpbjwbvN/R.INSTALL13c273fead33/Rhtslib/src/htslib-1.18' 2024-04-15T15:25:44.7122371Z mkdir -p "/__w/_temp/Library/Rhtslib/include/htslib" 2024-04-15T15:25:44.7151477Z cd "htslib-1.18/htslib" && cp * "/__w/_temp/Library/Rhtslib/include/htslib" 2024-04-15T15:25:44.7202719Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/__w/_temp/Library/Rhtslib/include" -I'/__w/_temp/Library/zlibbioc/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_Rhtslib.c -o R_init_Rhtslib.o 2024-04-15T15:25:44.7622137Z mkdir -p "/__w/_temp/Library/Rhtslib/usrlib" 2024-04-15T15:25:44.7648878Z cd "htslib-1.18" && cp libhts.so libhts.a "/__w/_temp/Library/Rhtslib/usrlib" 2024-04-15T15:25:44.7804980Z cd "/__w/_temp/Library/Rhtslib/usrlib" && ln -s libhts.so libhts.so.2 2024-04-15T15:25:44.7846280Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o Rhtslib.so R_init_Rhtslib.o /__w/_temp/Library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/usr/local/lib/R/lib -lR 2024-04-15T15:25:44.8382481Z mkdir -p "/__w/_temp/Library/Rhtslib/testdata/tabix" 2024-04-15T15:25:44.8411782Z cd "htslib-1.18/test" && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/__w/_temp/Library/Rhtslib/testdata" 2>/dev/null || true) && cd tabix && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/__w/_temp/Library/Rhtslib/testdata/tabix" 2>/dev/null || true) 2024-04-15T15:25:44.8587577Z installing to /__w/_temp/Library/Rhtslib/libs 2024-04-15T15:25:44.8631989Z ** R 2024-04-15T15:25:44.8653843Z ** inst 2024-04-15T15:25:44.8688073Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:25:45.0713090Z ** help 2024-04-15T15:25:45.0808899Z *** installing help indices 2024-04-15T15:25:45.0940125Z ** building package indices 2024-04-15T15:25:45.2635142Z ** installing vignettes 2024-04-15T15:25:45.2675721Z ** testing if installed package can be loaded 2024-04-15T15:25:45.4343070Z * DONE (Rhtslib) 2024-04-15T15:25:45.6785130Z * installing *binary* package ‘restfulr’ ... 2024-04-15T15:25:45.6836357Z * DONE (restfulr) 2024-04-15T15:25:45.8990577Z * installing *binary* package ‘BiocIO’ ... 2024-04-15T15:25:45.9045868Z * DONE (BiocIO) 2024-04-15T15:25:46.1110069Z * installing *source* package ‘munsell’ ... 2024-04-15T15:25:46.1134694Z ** package ‘munsell’ successfully unpacked and MD5 sums checked 2024-04-15T15:25:46.1135561Z ** using staged installation 2024-04-15T15:25:46.1211408Z ** R 2024-04-15T15:25:46.1300961Z ** inst 2024-04-15T15:25:46.1312656Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:25:46.5794951Z ** help 2024-04-15T15:25:46.6188457Z *** installing help indices 2024-04-15T15:25:46.6449277Z *** copying figures 2024-04-15T15:25:46.6455588Z ** building package indices 2024-04-15T15:25:46.8403326Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:25:47.0405091Z ** testing if installed package can be loaded from final location 2024-04-15T15:25:47.2444665Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:25:47.2456105Z * DONE (munsell) 2024-04-15T15:25:47.4539353Z * installing *binary* package ‘foreach’ ... 2024-04-15T15:25:47.4605815Z * DONE (foreach) 2024-04-15T15:25:47.7045788Z * installing *binary* package ‘showtextdb’ ... 2024-04-15T15:25:47.7115152Z * DONE (showtextdb) 2024-04-15T15:25:47.9800701Z * installing *binary* package ‘GetoptLong’ ... 2024-04-15T15:25:47.9884723Z * DONE (GetoptLong) 2024-04-15T15:25:48.3305396Z * installing *source* package ‘circlize’ ... 2024-04-15T15:25:48.3412548Z ** package ‘circlize’ successfully unpacked and MD5 sums checked 2024-04-15T15:25:48.3413789Z ** using staged installation 2024-04-15T15:25:48.3530041Z ** R 2024-04-15T15:25:48.3753622Z ** demo 2024-04-15T15:25:48.3759934Z ** inst 2024-04-15T15:25:48.3808526Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:25:52.7049778Z ** help 2024-04-15T15:25:52.9145167Z *** installing help indices 2024-04-15T15:25:53.0824911Z ** building package indices 2024-04-15T15:25:53.3662256Z ** installing vignettes 2024-04-15T15:25:53.3717734Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:25:53.6237488Z ** testing if installed package can be loaded from final location 2024-04-15T15:25:54.0553783Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:25:54.0619037Z * DONE (circlize) 2024-04-15T15:25:54.3288522Z * installing *binary* package ‘pdftools’ ... 2024-04-15T15:25:54.3361520Z * DONE (pdftools) 2024-04-15T15:25:54.7809266Z * installing *source* package ‘GenomeInfoDb’ ... 2024-04-15T15:25:54.7810042Z ** using staged installation 2024-04-15T15:25:54.7951032Z ** R 2024-04-15T15:25:54.8138884Z ** inst 2024-04-15T15:25:54.8396188Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:25:59.0909282Z ** help 2024-04-15T15:25:59.1505649Z *** installing help indices 2024-04-15T15:25:59.1880213Z ** building package indices 2024-04-15T15:25:59.3780712Z ** installing vignettes 2024-04-15T15:25:59.3826951Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:26:00.7369988Z ** testing if installed package can be loaded from final location 2024-04-15T15:26:02.1521956Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:26:02.1605156Z * DONE (GenomeInfoDb) 2024-04-15T15:26:02.3991035Z * installing *binary* package ‘XVector’ ... 2024-04-15T15:26:02.4056297Z * DONE (XVector) 2024-04-15T15:26:02.6371767Z * installing *source* package ‘S4Arrays’ ... 2024-04-15T15:26:02.6373038Z ** using staged installation 2024-04-15T15:26:02.6494653Z ** libs 2024-04-15T15:26:02.6635308Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:26:02.6659479Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_S4Arrays.c -o R_init_S4Arrays.o 2024-04-15T15:26:02.6999419Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2024-04-15T15:26:02.9710346Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abind.c -o abind.o 2024-04-15T15:26:03.0230224Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array_selection.c -o array_selection.o 2024-04-15T15:26:03.1270975Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dim_tuning_utils.c -o dim_tuning_utils.o 2024-04-15T15:26:03.1907256Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o S4Arrays.so R_init_S4Arrays.o S4Vectors_stubs.o abind.o array_selection.o dim_tuning_utils.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:26:03.2132792Z installing to /__w/_temp/Library/00LOCK-S4Arrays/00new/S4Arrays/libs 2024-04-15T15:26:03.2141869Z ** R 2024-04-15T15:26:03.2262071Z ** inst 2024-04-15T15:26:03.2280919Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:26:07.5811603Z ** help 2024-04-15T15:26:07.5812746Z Creating a new generic function for ‘rowsum’ in package ‘S4Arrays’ 2024-04-15T15:26:07.5814042Z Creating a new generic function for ‘abind’ in package ‘S4Arrays’ 2024-04-15T15:26:07.6289354Z *** installing help indices 2024-04-15T15:26:07.6607583Z ** building package indices 2024-04-15T15:26:07.8572805Z ** installing vignettes 2024-04-15T15:26:07.8619659Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:26:09.8799545Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:26:09.8922457Z ** testing if installed package can be loaded from final location 2024-04-15T15:26:11.9826044Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:26:11.9873291Z * DONE (S4Arrays) 2024-04-15T15:26:12.1783338Z * installing *binary* package ‘futile.logger’ ... 2024-04-15T15:26:12.1826706Z * DONE (futile.logger) 2024-04-15T15:26:12.4079162Z * installing *binary* package ‘scales’ ... 2024-04-15T15:26:12.4140888Z * DONE (scales) 2024-04-15T15:26:12.6121815Z * installing *binary* package ‘doParallel’ ... 2024-04-15T15:26:12.6176800Z * DONE (doParallel) 2024-04-15T15:26:12.8412584Z * installing *source* package ‘showtext’ ... 2024-04-15T15:26:12.8447215Z ** package ‘showtext’ successfully unpacked and MD5 sums checked 2024-04-15T15:26:12.8449233Z ** using staged installation 2024-04-15T15:26:13.2331896Z checking for gcc... gcc 2024-04-15T15:26:13.2912473Z checking whether the C compiler works... yes 2024-04-15T15:26:13.2913305Z checking for C compiler default output file name... a.out 2024-04-15T15:26:13.3241775Z checking for suffix of executables... 2024-04-15T15:26:13.3652587Z checking whether we are cross compiling... no 2024-04-15T15:26:13.3854689Z checking for suffix of object files... o 2024-04-15T15:26:13.4029131Z checking whether we are using the GNU C compiler... yes 2024-04-15T15:26:13.4193252Z checking whether gcc accepts -g... yes 2024-04-15T15:26:13.4503393Z checking for gcc option to accept ISO C89... none needed 2024-04-15T15:26:13.4505081Z checking for pkg-config... /usr/bin/pkg-config 2024-04-15T15:26:13.4522995Z checking whether pkg-config could find zlib... yes 2024-04-15T15:26:13.4570726Z checking whether pkg-config could find libpng... yes 2024-04-15T15:26:13.4624086Z checking whether pkg-config could find freetype2... yes 2024-04-15T15:26:13.5047824Z checking whether freetype2 flags work... yes 2024-04-15T15:26:13.5214040Z configure: creating ./config.status 2024-04-15T15:26:13.5973116Z config.status: creating src/Makevars 2024-04-15T15:26:13.6373143Z ** libs 2024-04-15T15:26:13.6488392Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:26:13.6512891Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o 2024-04-15T15:26:13.7034105Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cairodev.c -o cairodev.o 2024-04-15T15:26:13.7461490Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devfuns.c -o devfuns.o 2024-04-15T15:26:13.8433816Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fonts.c -o fonts.o 2024-04-15T15:26:13.9217618Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c outline.c -o outline.o 2024-04-15T15:26:14.0005842Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raster.c -o raster.o 2024-04-15T15:26:14.0767639Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register_routines.c -o register_routines.o 2024-04-15T15:26:14.1208510Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c showtext.c -o showtext.o 2024-04-15T15:26:14.1814140Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8.c -o utf8.o 2024-04-15T15:26:14.2396935Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o 2024-04-15T15:26:14.2984714Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o showtext.so array.o cairodev.o devfuns.o fonts.o outline.o raster.o register_routines.o showtext.o utf8.o util.o -lfreetype -lpng16 -lz -lz -L/usr/local/lib/R/lib -lR 2024-04-15T15:26:14.3237684Z installing to /__w/_temp/Library/00LOCK-showtext/00new/showtext/libs 2024-04-15T15:26:14.3245998Z ** R 2024-04-15T15:26:14.3274360Z ** inst 2024-04-15T15:26:14.3290455Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:26:14.5621977Z ** help 2024-04-15T15:26:14.5784594Z *** installing help indices 2024-04-15T15:26:14.5895208Z ** building package indices 2024-04-15T15:26:14.7587589Z ** installing vignettes 2024-04-15T15:26:14.7627596Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:26:14.9760849Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:26:14.9884515Z ** testing if installed package can be loaded from final location 2024-04-15T15:26:15.1985978Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:26:15.1995541Z * DONE (showtext) 2024-04-15T15:26:15.9142190Z * installing *source* package ‘Biostrings’ ... 2024-04-15T15:26:15.9143055Z ** using staged installation 2024-04-15T15:26:15.9317964Z ** libs 2024-04-15T15:26:15.9451279Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:26:15.9476870Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BAB_class.c -o BAB_class.o 2024-04-15T15:26:15.9920590Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BitMatrix.c -o BitMatrix.o 2024-04-15T15:26:16.0875454Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o 2024-04-15T15:26:16.1857006Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MIndex_class.c -o MIndex_class.o 2024-04-15T15:26:16.2707077Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PreprocessedTB_class.c -o PreprocessedTB_class.o 2024-04-15T15:26:16.3217069Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_Biostrings.c -o R_init_Biostrings.o 2024-04-15T15:26:16.3634070Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RoSeqs_utils.c -o RoSeqs_utils.o 2024-04-15T15:26:16.3983202Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2024-04-15T15:26:16.6701049Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseList_utils.c -o SparseList_utils.o 2024-04-15T15:26:16.7272541Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSetList_class.c -o XStringSetList_class.o 2024-04-15T15:26:16.7696307Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSet_class.c -o XStringSet_class.o 2024-04-15T15:26:16.8437005Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XString_class.c -o XString_class.o 2024-04-15T15:26:16.9176937Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o 2024-04-15T15:26:17.0666196Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_needwunsQS.c -o align_needwunsQS.o 2024-04-15T15:26:17.1426167Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o 2024-04-15T15:26:17.5163153Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_utils.c -o align_utils.o 2024-04-15T15:26:17.6387653Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c find_palindromes.c -o find_palindromes.o 2024-04-15T15:26:17.7209204Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gtestsim.c -o gtestsim.o 2024-04-15T15:26:17.7975487Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inject_code.c -o inject_code.o 2024-04-15T15:26:17.8431644Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c letter_frequency.c -o letter_frequency.o 2024-04-15T15:26:17.8701430Z letter_frequency.c: In function ‘XString_letterFrequencyInSlidingView’: 2024-04-15T15:26:17.8703066Z letter_frequency.c:536:31: warning: too many arguments for format [-Wformat-extra-args] 2024-04-15T15:26:17.8704175Z 536 | error("Biostrings internal error in " 2024-04-15T15:26:17.8704942Z | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:26:17.8705961Z letter_frequency.c: In function ‘XStringSet_letterFrequency’: 2024-04-15T15:26:17.8707236Z letter_frequency.c:589:31: warning: too many arguments for format [-Wformat-extra-args] 2024-04-15T15:26:17.8708359Z 589 | error("Biostrings internal error in " 2024-04-15T15:26:17.8709139Z | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:26:18.1650420Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowlevel_matching.c -o lowlevel_matching.o 2024-04-15T15:26:18.3551283Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_PWM.c -o match_PWM.o 2024-04-15T15:26:18.4245368Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern.c -o match_pattern.o 2024-04-15T15:26:18.5023978Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o 2024-04-15T15:26:18.6182487Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_indels.c -o match_pattern_indels.o 2024-04-15T15:26:18.6673083Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_shiftor.c -o match_pattern_shiftor.o 2024-04-15T15:26:18.7325680Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict.c -o match_pdict.o 2024-04-15T15:26:18.8666894Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o 2024-04-15T15:26:18.8981777Z match_pdict_ACtree2.c: In function ‘ACtree2_summary’: 2024-04-15T15:26:18.8984028Z match_pdict_ACtree2.c:732:45: warning: unknown conversion type character ‘)’ in format [-Wformat=] 2024-04-15T15:26:18.8985440Z 732 | Rprintf("| - %u nodes (%.2f%) with %d links\n", 2024-04-15T15:26:18.8986595Z | ^ 2024-04-15T15:26:19.0999720Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_Twobit.c -o match_pdict_Twobit.o 2024-04-15T15:26:19.1632346Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_utils.c -o match_pdict_utils.o 2024-04-15T15:26:19.3491084Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_reporting.c -o match_reporting.o 2024-04-15T15:26:19.3746701Z match_reporting.c: In function ‘_new_MatchBuf’: 2024-04-15T15:26:19.3747625Z match_reporting.c:49:23: warning: too many arguments for format [-Wformat-extra-args] 2024-04-15T15:26:19.3748439Z 49 | error("Biostrings internal error in _new_MatchBuf(): ", 2024-04-15T15:26:19.3749031Z | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:26:19.4428258Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matchprobes.c -o matchprobes.o 2024-04-15T15:26:19.5138156Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pmatchPattern.c -o pmatchPattern.o 2024-04-15T15:26:19.5617589Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_fasta_files.c -o read_fasta_files.o 2024-04-15T15:26:19.7066017Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_fastq_files.c -o read_fastq_files.o 2024-04-15T15:26:19.8469429Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c replaceAt.c -o replaceAt.o 2024-04-15T15:26:19.9479931Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c replace_letter_at.c -o replace_letter_at.o 2024-04-15T15:26:20.0240163Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strutils.c -o strutils.o 2024-04-15T15:26:20.0550803Z strutils.c: In function ‘MP_longestConsecutive’: 2024-04-15T15:26:20.0552883Z strutils.c:50:72: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 2024-04-15T15:26:20.0554903Z 50 | error("'letter' must contain exactly one character but contains %d.", 2024-04-15T15:26:20.0557253Z | ~^ 2024-04-15T15:26:20.0558076Z | | 2024-04-15T15:26:20.0561214Z | int 2024-04-15T15:26:20.0562086Z | %ld 2024-04-15T15:26:20.0562758Z 51 | strlen(pc)); 2024-04-15T15:26:20.0563444Z | ~~~~~~~~~~ 2024-04-15T15:26:20.0564095Z | | 2024-04-15T15:26:20.0566890Z | size_t {aka long unsigned int} 2024-04-15T15:26:20.0777795Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c translate.c -o translate.o 2024-04-15T15:26:20.1623076Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unstrsplit_methods.c -o unstrsplit_methods.o 2024-04-15T15:26:20.2189885Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o 2024-04-15T15:26:20.2940787Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xscat.c -o xscat.o 2024-04-15T15:26:20.3672807Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:26:20.4052071Z installing to /__w/_temp/Library/00LOCK-Biostrings/00new/Biostrings/libs 2024-04-15T15:26:20.4068047Z ** R 2024-04-15T15:26:20.4517151Z ** data 2024-04-15T15:26:20.4530071Z ** inst 2024-04-15T15:26:20.4719447Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:26:31.7779425Z in method for ‘twoWayAlphabetFrequencyByQuality’ with signature ‘"QualityScaledXStringSet"’: no definition for class “QualityScaledXStringSet” 2024-04-15T15:26:31.7781237Z Creating a new generic function for ‘strsplit’ in package ‘Biostrings’ 2024-04-15T15:26:31.7782854Z Creating a generic function for ‘ls’ from package ‘base’ in package ‘Biostrings’ 2024-04-15T15:26:31.7784091Z Creating a new generic function for ‘pattern’ in package ‘Biostrings’ 2024-04-15T15:26:31.7785533Z Creating a new generic function for ‘offset’ in package ‘Biostrings’ 2024-04-15T15:26:31.7786238Z ** help 2024-04-15T15:26:32.1048285Z *** installing help indices 2024-04-15T15:26:32.2461385Z ** building package indices 2024-04-15T15:26:32.5572832Z ** installing vignettes 2024-04-15T15:26:32.5633234Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:26:34.2692387Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:26:34.2842790Z ** testing if installed package can be loaded from final location 2024-04-15T15:26:36.4264545Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:26:36.4406137Z * DONE (Biostrings) 2024-04-15T15:26:36.7404786Z * installing *source* package ‘SparseArray’ ... 2024-04-15T15:26:36.7406464Z ** using staged installation 2024-04-15T15:26:36.7538433Z ** libs 2024-04-15T15:26:36.7695679Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:26:36.7720888Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o 2024-04-15T15:26:36.8393659Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o 2024-04-15T15:26:36.9376021Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_SparseArray.c -o R_init_SparseArray.o 2024-04-15T15:26:36.9731548Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rvector_summarization.c -o Rvector_summarization.o 2024-04-15T15:26:37.1601131Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rvector_utils.c -o Rvector_utils.o 2024-04-15T15:26:37.3453662Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2024-04-15T15:26:37.6170178Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SBT_utils.c -o SBT_utils.o 2024-04-15T15:26:37.7770873Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o 2024-04-15T15:26:37.9506035Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o 2024-04-15T15:26:37.9848093Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o 2024-04-15T15:26:38.0876697Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_Ops_methods.c -o SparseArray_Ops_methods.o 2024-04-15T15:26:38.2070504Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_abind.c -o SparseArray_abind.o 2024-04-15T15:26:38.3014107Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_aperm.c -o SparseArray_aperm.o 2024-04-15T15:26:38.5513754Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_class.c -o SparseArray_class.o 2024-04-15T15:26:38.5906241Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_dim_tuning.c -o SparseArray_dim_tuning.o 2024-04-15T15:26:38.6849507Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_subassignment.c -o SparseArray_subassignment.o 2024-04-15T15:26:38.9498772Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_subsetting.c -o SparseArray_subsetting.o 2024-04-15T15:26:39.0299436Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseArray_summarization.c -o SparseArray_summarization.o 2024-04-15T15:26:39.0845315Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseMatrix_mult.c -o SparseMatrix_mult.o 2024-04-15T15:26:39.3688809Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o 2024-04-15T15:26:39.5165709Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerceVector2.c -o coerceVector2.o 2024-04-15T15:26:39.6476165Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c leaf_vector_Arith.c -o leaf_vector_Arith.o 2024-04-15T15:26:39.8847966Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c leaf_vector_Compare.c -o leaf_vector_Compare.o 2024-04-15T15:26:40.2433179Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c leaf_vector_Logic.c -o leaf_vector_Logic.o 2024-04-15T15:26:40.3088502Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c leaf_vector_dotprod.c -o leaf_vector_dotprod.o 2024-04-15T15:26:40.4049114Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c leaf_vector_summarization.c -o leaf_vector_summarization.o 2024-04-15T15:26:40.4444846Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c leaf_vector_utils.c -o leaf_vector_utils.o 2024-04-15T15:26:40.5670088Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrixStats_methods.c -o matrixStats_methods.o 2024-04-15T15:26:40.6421810Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c randomSparseArray.c -o randomSparseArray.o 2024-04-15T15:26:40.7158379Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readSparseCSV.c -o readSparseCSV.o 2024-04-15T15:26:40.8101078Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowsum_methods.c -o rowsum_methods.o 2024-04-15T15:26:40.8968707Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sparseMatrix_utils.c -o sparseMatrix_utils.o 2024-04-15T15:26:40.9820870Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test.c -o test.o 2024-04-15T15:26:41.0205901Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o SparseArray.so ExtendableJaggedArray.o IRanges_stubs.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SBT_utils.o SVT_SparseArray_class.o SparseArray_Complex_methods.o SparseArray_Math_methods.o SparseArray_Ops_methods.o SparseArray_abind.o SparseArray_aperm.o SparseArray_class.o SparseArray_dim_tuning.o SparseArray_subassignment.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o XVector_stubs.o coerceVector2.o leaf_vector_Arith.o leaf_vector_Compare.o leaf_vector_Logic.o leaf_vector_dotprod.o leaf_vector_summarization.o leaf_vector_utils.o matrixStats_methods.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:26:41.0573688Z installing to /__w/_temp/Library/00LOCK-SparseArray/00new/SparseArray/libs 2024-04-15T15:26:41.0592311Z ** R 2024-04-15T15:26:41.0727469Z ** inst 2024-04-15T15:26:41.0747545Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:26:48.1911754Z ** help 2024-04-15T15:26:48.2605800Z *** installing help indices 2024-04-15T15:26:48.3098784Z ** building package indices 2024-04-15T15:26:48.5049362Z ** installing vignettes 2024-04-15T15:26:48.5095740Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:26:51.0411081Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:26:51.0560747Z ** testing if installed package can be loaded from final location 2024-04-15T15:26:53.8101162Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:26:53.8255554Z * DONE (SparseArray) 2024-04-15T15:26:54.1352300Z * installing *source* package ‘BiocParallel’ ... 2024-04-15T15:26:54.1354575Z ** using staged installation 2024-04-15T15:26:54.5780065Z checking whether the C++ compiler works... yes 2024-04-15T15:26:54.5780916Z checking for C++ compiler default output file name... a.out 2024-04-15T15:26:54.6207456Z checking for suffix of executables... 2024-04-15T15:26:54.6747182Z checking whether we are cross compiling... no 2024-04-15T15:26:54.6958067Z checking for suffix of object files... o 2024-04-15T15:26:54.7142244Z checking whether the compiler supports GNU C++... yes 2024-04-15T15:26:54.7322230Z checking whether g++ -std=gnu++17 accepts -g... yes 2024-04-15T15:26:54.7988583Z checking for g++ -std=gnu++17 option to enable C++11 features... none needed 2024-04-15T15:26:54.8447740Z checking for library containing shm_open... none required 2024-04-15T15:26:54.8675228Z checking for stdio.h... yes 2024-04-15T15:26:54.8999134Z checking for stdlib.h... yes 2024-04-15T15:26:54.9353990Z checking for string.h... yes 2024-04-15T15:26:54.9712340Z checking for inttypes.h... yes 2024-04-15T15:26:55.0084421Z checking for stdint.h... yes 2024-04-15T15:26:55.0459635Z checking for strings.h... yes 2024-04-15T15:26:55.0858518Z checking for sys/stat.h... yes 2024-04-15T15:26:55.1258951Z checking for sys/types.h... yes 2024-04-15T15:26:55.1727956Z checking for unistd.h... yes 2024-04-15T15:26:55.2209728Z checking for sys/mman.h... yes 2024-04-15T15:26:55.2376457Z configure: creating ./config.status 2024-04-15T15:26:55.3159416Z config.status: creating src/Makevars 2024-04-15T15:26:55.3632197Z ** libs 2024-04-15T15:26:55.3753023Z using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:26:55.3753619Z using C++11 2024-04-15T15:26:55.3777993Z g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/BH/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cpp11.cpp -o cpp11.o 2024-04-15T15:26:56.0834808Z g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/BH/include' -I'/usr/local/lib/R/site-library/cpp11/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ipcmutex.cpp -o ipcmutex.o 2024-04-15T15:26:59.3933576Z g++ -std=gnu++11 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o BiocParallel.so cpp11.o ipcmutex.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:26:59.4621285Z installing to /__w/_temp/Library/00LOCK-BiocParallel/00new/BiocParallel/libs 2024-04-15T15:26:59.4648594Z ** R 2024-04-15T15:26:59.4770667Z ** inst 2024-04-15T15:26:59.4841915Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:27:02.5762405Z ** help 2024-04-15T15:27:02.6823533Z *** installing help indices 2024-04-15T15:27:02.7768006Z ** building package indices 2024-04-15T15:27:02.9934940Z ** installing vignettes 2024-04-15T15:27:02.9984409Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:27:03.2300029Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:27:03.2482842Z ** testing if installed package can be loaded from final location 2024-04-15T15:27:03.5338118Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:27:03.5399216Z * DONE (BiocParallel) 2024-04-15T15:27:03.8480072Z * installing *source* package ‘GenomicRanges’ ... 2024-04-15T15:27:03.8481834Z ** using staged installation 2024-04-15T15:27:03.8666187Z ** libs 2024-04-15T15:27:03.8784490Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:27:03.8808264Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o 2024-04-15T15:27:03.9796711Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o 2024-04-15T15:27:04.0124066Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2024-04-15T15:27:04.2846154Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transcript_utils.c -o transcript_utils.o 2024-04-15T15:27:04.3637686Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:27:04.3863612Z installing to /__w/_temp/Library/00LOCK-GenomicRanges/00new/GenomicRanges/libs 2024-04-15T15:27:04.3874148Z ** R 2024-04-15T15:27:04.4077392Z ** inst 2024-04-15T15:27:04.4135650Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:27:13.1295455Z ** help 2024-04-15T15:27:13.2586358Z *** installing help indices 2024-04-15T15:27:13.3674219Z ** building package indices 2024-04-15T15:27:13.5924333Z ** installing vignettes 2024-04-15T15:27:13.5977180Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:27:15.2581270Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:27:15.2704851Z ** testing if installed package can be loaded from final location 2024-04-15T15:27:17.1142303Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:27:17.1253917Z * DONE (GenomicRanges) 2024-04-15T15:27:17.9825777Z * installing *source* package ‘ggplot2’ ... 2024-04-15T15:27:18.0281408Z ** package ‘ggplot2’ successfully unpacked and MD5 sums checked 2024-04-15T15:27:18.0282299Z ** using staged installation 2024-04-15T15:27:18.0494200Z ** R 2024-04-15T15:27:18.1521251Z ** data 2024-04-15T15:27:18.1537373Z *** moving datasets to lazyload DB 2024-04-15T15:27:18.4619111Z ** inst 2024-04-15T15:27:18.4666057Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:27:26.9975096Z ** help 2024-04-15T15:27:27.6123936Z *** installing help indices 2024-04-15T15:27:28.0136519Z *** copying figures 2024-04-15T15:27:28.0145605Z ** building package indices 2024-04-15T15:27:28.5605251Z ** installing vignettes 2024-04-15T15:27:28.5735029Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:27:29.1830262Z ** testing if installed package can be loaded from final location 2024-04-15T15:27:29.9731631Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:27:29.9825125Z * DONE (ggplot2) 2024-04-15T15:27:30.3083633Z * installing *binary* package ‘ComplexHeatmap’ ... 2024-04-15T15:27:30.3175731Z * DONE (ComplexHeatmap) 2024-04-15T15:27:30.5134810Z * installing *binary* package ‘KEGGREST’ ... 2024-04-15T15:27:30.5185969Z * DONE (KEGGREST) 2024-04-15T15:27:30.7988610Z * installing *source* package ‘DelayedArray’ ... 2024-04-15T15:27:30.7990169Z ** using staged installation 2024-04-15T15:27:30.8155818Z ** libs 2024-04-15T15:27:30.8273869Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:27:30.8298238Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DelayedArray.c -o R_init_DelayedArray.o 2024-04-15T15:27:30.8624411Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2024-04-15T15:27:31.1348662Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compress_atomic_vector.c -o compress_atomic_vector.o 2024-04-15T15:27:31.1800329Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o compress_atomic_vector.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:27:31.2020335Z installing to /__w/_temp/Library/00LOCK-DelayedArray/00new/DelayedArray/libs 2024-04-15T15:27:31.2029276Z ** R 2024-04-15T15:27:31.2301362Z ** inst 2024-04-15T15:27:31.2342084Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:27:42.4017491Z ** help 2024-04-15T15:27:42.4018345Z Creating a new generic function for ‘apply’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4019097Z Creating a new generic function for ‘sweep’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4019797Z Creating a new generic function for ‘scale’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4020611Z Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4021538Z Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4022745Z Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4023643Z Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4024756Z Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4025594Z Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4026428Z Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4027285Z Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4028113Z Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4028856Z Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4029900Z Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.4030756Z Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ 2024-04-15T15:27:42.5257165Z *** installing help indices 2024-04-15T15:27:42.6372243Z ** building package indices 2024-04-15T15:27:42.8708395Z ** installing vignettes 2024-04-15T15:27:42.8763219Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:27:45.8786379Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:27:45.8905878Z ** testing if installed package can be loaded from final location 2024-04-15T15:27:49.2426687Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:27:49.2614818Z * DONE (DelayedArray) 2024-04-15T15:27:49.6715028Z * installing *source* package ‘Rsamtools’ ... 2024-04-15T15:27:49.6716299Z ** using staged installation 2024-04-15T15:27:49.6871498Z ** libs 2024-04-15T15:27:49.7042619Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:27:49.7064131Z using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:27:49.8709261Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o 2024-04-15T15:27:50.1271666Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c COMPAT_bcf_hdr_read.c -o COMPAT_bcf_hdr_read.o 2024-04-15T15:27:50.3844242Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o 2024-04-15T15:27:50.6426550Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PileupBuffer.cpp -o PileupBuffer.o 2024-04-15T15:27:51.3987394Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PosCacheColl.cpp -o PosCacheColl.o 2024-04-15T15:27:52.0120150Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_Rsamtools.c -o R_init_Rsamtools.o 2024-04-15T15:27:52.2246814Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ResultManager.cpp -o ResultManager.o 2024-04-15T15:27:53.6252877Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2024-04-15T15:27:54.0631672Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o 2024-04-15T15:27:54.3813654Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c as_bam.c -o as_bam.o 2024-04-15T15:27:54.6133877Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bam.c -o bam.o 2024-04-15T15:27:54.9012581Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bam_data.c -o bam_data.o 2024-04-15T15:27:55.2828108Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bam_mate_iter.cpp -o bam_mate_iter.o 2024-04-15T15:27:55.7891869Z In file included from Template.h:9, 2024-04-15T15:27:55.7893323Z from BamIterator.h:10, 2024-04-15T15:27:55.7895769Z from BamRangeIterator.h:7, 2024-04-15T15:27:55.7897116Z from bam_mate_iter.cpp:1: 2024-04-15T15:27:55.7899145Z BamRangeIterator.h: In member function ‘virtual void BamRangeIterator::finalize_inprogress(bamFile)’: 2024-04-15T15:27:55.7902210Z /__w/_temp/Library/Rhtslib/include/samtools-1.7-compat.h:14:41: warning: ignoring return value of ‘int64_t bgzf_seek(BGZF*, int64_t, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2024-04-15T15:27:55.7958763Z 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) 2024-04-15T15:27:55.7959514Z | ~~~~~~~~~^~~~~~~~~~~~~~ 2024-04-15T15:27:55.7960445Z BamRangeIterator.h:138:16: note: in expansion of macro ‘bam_seek’ 2024-04-15T15:27:55.7961165Z 138 | (void) bam_seek(bfile, pos, SEEK_SET); 2024-04-15T15:27:55.7961526Z | ^~~~~~~~ 2024-04-15T15:27:55.7986537Z BamIterator.h: In constructor ‘BamIterator::BamIterator(bamFile, const bam_index_t*)’: 2024-04-15T15:27:55.7989004Z /__w/_temp/Library/Rhtslib/include/samtools-1.7-compat.h:14:41: warning: ignoring return value of ‘int64_t bgzf_seek(BGZF*, int64_t, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2024-04-15T15:27:55.7991246Z 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) 2024-04-15T15:27:55.7992024Z | ~~~~~~~~~^~~~~~~~~~~~~~ 2024-04-15T15:27:55.7992967Z BamIterator.h:87:16: note: in expansion of macro ‘bam_seek’ 2024-04-15T15:27:55.7993745Z 87 | (void) bam_seek(bfile, 0, 0); 2024-04-15T15:27:55.7994309Z | ^~~~~~~~ 2024-04-15T15:27:56.9600244Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bam_plbuf.c -o bam_plbuf.o 2024-04-15T15:27:57.1624546Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bam_sort.c -o bam_sort.o 2024-04-15T15:27:59.1360083Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bambuffer.c -o bambuffer.o 2024-04-15T15:27:59.3842298Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bamfile.c -o bamfile.o 2024-04-15T15:27:59.4226615Z bamfile.c: In function ‘bamfile_isincomplete’: 2024-04-15T15:27:59.4228483Z bamfile.c:168:20: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2024-04-15T15:27:59.4230427Z 168 | (void) bgzf_seek(bfile->file->x.bam, offset, SEEK_SET); 2024-04-15T15:27:59.4231054Z | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:27:59.6614739Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bcffile.c -o bcffile.o 2024-04-15T15:28:00.1666142Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bedidx.c -o bedidx.o 2024-04-15T15:28:00.6685451Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c encode.c -o encode.o 2024-04-15T15:28:00.8641872Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fafile.c -o fafile.o 2024-04-15T15:28:01.1122113Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idxstats.c -o idxstats.o 2024-04-15T15:28:01.1495275Z In file included from bamfile.h:5, 2024-04-15T15:28:01.1499916Z from idxstats.c:1: 2024-04-15T15:28:01.1500903Z idxstats.c: In function ‘idxstats_bamfile’: 2024-04-15T15:28:01.1502889Z /__w/_temp/Library/Rhtslib/include/samtools-1.7-compat.h:14:32: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2024-04-15T15:28:01.1504678Z 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) 2024-04-15T15:28:01.1505426Z | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:28:01.1506324Z idxstats.c:20:12: note: in expansion of macro ‘bam_seek’ 2024-04-15T15:28:01.1507048Z 20 | (void) bam_seek(fp, 0, 0); 2024-04-15T15:28:01.1507575Z | ^~~~~~~~ 2024-04-15T15:28:01.3392123Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_sam.c -o io_sam.o 2024-04-15T15:28:01.3844503Z In file included from io_sam.c:3: 2024-04-15T15:28:01.3845568Z io_sam.c: In function ‘_scan_bam_all’: 2024-04-15T15:28:01.3848482Z /__w/_temp/Library/Rhtslib/include/samtools-1.7-compat.h:14:32: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2024-04-15T15:28:01.3850677Z 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) 2024-04-15T15:28:01.3851570Z | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:28:01.3852543Z io_sam.c:302:12: note: in expansion of macro ‘bam_seek’ 2024-04-15T15:28:01.3853569Z 302 | (void) bam_seek(bfile->file->x.bam, bfile->pos0, SEEK_SET); 2024-04-15T15:28:01.3857734Z | ^~~~~~~~ 2024-04-15T15:28:01.7435341Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbuffer_wrapper.cpp -o pbuffer_wrapper.o 2024-04-15T15:28:02.3736761Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pileup.cpp -o pileup.o 2024-04-15T15:28:03.1766276Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pileupbam.c -o pileupbam.o 2024-04-15T15:28:03.5521013Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sam_opts.c -o sam_opts.o 2024-04-15T15:28:03.7804704Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sam_utils.c -o sam_utils.o 2024-04-15T15:28:04.0475092Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c samtools_patch.c -o samtools_patch.o 2024-04-15T15:28:04.2551229Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scan_bam_data.c -o scan_bam_data.o 2024-04-15T15:28:04.5291960Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tabixfile.c -o tabixfile.o 2024-04-15T15:28:04.5637427Z tabixfile.c: In function ‘index_tabix’: 2024-04-15T15:28:04.5638652Z tabixfile.c:190:5: warning: ‘bgzf_is_bgzf’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 2024-04-15T15:28:04.5639637Z 190 | if (bgzf_is_bgzf(fn) != 1) 2024-04-15T15:28:04.5640027Z | ^~ 2024-04-15T15:28:04.5640335Z In file included from tabixfile.c:3: 2024-04-15T15:28:04.5641310Z /__w/_temp/Library/Rhtslib/include/htslib/bgzf.h:270:9: note: declared here 2024-04-15T15:28:04.5642364Z 270 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); 2024-04-15T15:28:04.5643238Z | ^~~~~~~~~~~~ 2024-04-15T15:28:04.8228042Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tagfilter.c -o tagfilter.o 2024-04-15T15:28:05.0806947Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utilities.c -o utilities.o 2024-04-15T15:28:05.4855268Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/Rhtslib/include' -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I'/__w/_temp/Library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zip_compression.c -o zip_compression.o 2024-04-15T15:28:05.8645198Z g++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o Rsamtools.so Biostrings_stubs.o COMPAT_bcf_hdr_read.o IRanges_stubs.o PileupBuffer.o PosCacheColl.o R_init_Rsamtools.o ResultManager.o S4Vectors_stubs.o XVector_stubs.o as_bam.o bam.o bam_data.o bam_mate_iter.o bam_plbuf.o bam_sort.o bambuffer.o bamfile.o bcffile.o bedidx.o encode.o fafile.o idxstats.o io_sam.o pbuffer_wrapper.o pileup.o pileupbam.o sam_opts.o sam_utils.o samtools_patch.o scan_bam_data.o tabixfile.o tagfilter.o utilities.o zip_compression.o /__w/_temp/Library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/usr/local/lib/R/lib -lR 2024-04-15T15:28:05.9942557Z installing to /__w/_temp/Library/00LOCK-Rsamtools/00new/Rsamtools/libs 2024-04-15T15:28:06.0023953Z ** R 2024-04-15T15:28:06.0171874Z ** inst 2024-04-15T15:28:06.0300730Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:28:11.1637119Z ** help 2024-04-15T15:28:11.2726939Z *** installing help indices 2024-04-15T15:28:11.3680082Z ** building package indices 2024-04-15T15:28:11.5918943Z ** installing vignettes 2024-04-15T15:28:11.5967571Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:28:13.9690742Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:28:14.0026171Z ** testing if installed package can be loaded from final location 2024-04-15T15:28:16.4292208Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:28:16.4375947Z * DONE (Rsamtools) 2024-04-15T15:28:16.6485454Z * installing *binary* package ‘ggplotify’ ... 2024-04-15T15:28:16.6533005Z * DONE (ggplotify) 2024-04-15T15:28:16.9722497Z * installing *binary* package ‘SummarizedExperiment’ ... 2024-04-15T15:28:16.9832498Z * DONE (SummarizedExperiment) 2024-04-15T15:28:17.4673370Z * installing *binary* package ‘AnnotationDbi’ ... 2024-04-15T15:28:17.4910235Z * DONE (AnnotationDbi) 2024-04-15T15:28:17.8298985Z * installing *source* package ‘GenomicAlignments’ ... 2024-04-15T15:28:17.8300959Z ** using staged installation 2024-04-15T15:28:17.8467325Z ** libs 2024-04-15T15:28:17.8590899Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:28:17.8614550Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o 2024-04-15T15:28:17.9591984Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_GenomicAlignments.c -o R_init_GenomicAlignments.o 2024-04-15T15:28:17.9925019Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2024-04-15T15:28:18.2632258Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cigar_utils.c -o cigar_utils.o 2024-04-15T15:28:18.5074232Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coordinate_mapping_methods.c -o coordinate_mapping_methods.o 2024-04-15T15:28:18.5931625Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c encodeOverlaps_methods.c -o encodeOverlaps_methods.o 2024-04-15T15:28:18.7338572Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o GenomicAlignments.so IRanges_stubs.o R_init_GenomicAlignments.o S4Vectors_stubs.o cigar_utils.o coordinate_mapping_methods.o encodeOverlaps_methods.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:28:18.7579331Z installing to /__w/_temp/Library/00LOCK-GenomicAlignments/00new/GenomicAlignments/libs 2024-04-15T15:28:18.7589425Z ** R 2024-04-15T15:28:18.7784987Z ** inst 2024-04-15T15:28:18.7836290Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:28:29.4533836Z ** help 2024-04-15T15:28:29.5828605Z *** installing help indices 2024-04-15T15:28:29.6911439Z ** building package indices 2024-04-15T15:28:29.9220017Z ** installing vignettes 2024-04-15T15:28:29.9274667Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:28:35.6030906Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:28:35.6155646Z ** testing if installed package can be loaded from final location 2024-04-15T15:28:41.5097425Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:28:41.5234646Z * DONE (GenomicAlignments) 2024-04-15T15:28:52.3193865Z * installing *source* package ‘org.Hs.eg.db’ ... 2024-04-15T15:28:52.3194654Z ** using staged installation 2024-04-15T15:28:52.3271251Z ** R 2024-04-15T15:28:52.3287792Z ** inst 2024-04-15T15:28:52.7311314Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:28:55.2936902Z ** help 2024-04-15T15:28:55.3399835Z *** installing help indices 2024-04-15T15:28:55.3721616Z ** building package indices 2024-04-15T15:28:55.5621881Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:28:58.2726498Z ** testing if installed package can be loaded from final location 2024-04-15T15:29:01.0493232Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:29:01.0565260Z * DONE (org.Hs.eg.db) 2024-04-15T15:29:01.4779260Z * installing *binary* package ‘InteractionSet’ ... 2024-04-15T15:29:01.4883932Z * DONE (InteractionSet) 2024-04-15T15:29:01.7804082Z * installing *source* package ‘AnnotationHub’ ... 2024-04-15T15:29:01.7805778Z ** using staged installation 2024-04-15T15:29:01.7971459Z ** R 2024-04-15T15:29:01.8064803Z ** inst 2024-04-15T15:29:01.8117191Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:29:06.8911900Z ** help 2024-04-15T15:29:06.9159070Z *** installing help indices 2024-04-15T15:29:06.9373366Z ** building package indices 2024-04-15T15:29:07.1170847Z ** installing vignettes 2024-04-15T15:29:07.1214710Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:29:10.0343140Z ** testing if installed package can be loaded from final location 2024-04-15T15:29:13.0160756Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:29:13.0211614Z * DONE (AnnotationHub) 2024-04-15T15:29:13.4846003Z * installing *source* package ‘rtracklayer’ ... 2024-04-15T15:29:13.4847134Z ** using staged installation 2024-04-15T15:29:13.7909378Z checking for pkg-config... /usr/bin/pkg-config 2024-04-15T15:29:13.7925890Z checking pkg-config is at least version 0.9.0... yes 2024-04-15T15:29:13.8003567Z checking for OPENSSL... yes 2024-04-15T15:29:13.8154287Z configure: creating ./config.status 2024-04-15T15:29:13.8903925Z config.status: creating src/Makevars 2024-04-15T15:29:13.9363113Z ** libs 2024-04-15T15:29:13.9489451Z using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:29:13.9515464Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2024-04-15T15:29:14.2218729Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o 2024-04-15T15:29:14.3195228Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o 2024-04-15T15:29:14.4656565Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_rtracklayer.c -o R_init_rtracklayer.o 2024-04-15T15:29:14.5002962Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readGFF.c -o readGFF.o 2024-04-15T15:29:14.7365838Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bbiHelper.c -o bbiHelper.o 2024-04-15T15:29:14.8071958Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bigWig.c -o bigWig.o 2024-04-15T15:29:14.9717482Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bigBedHelper.c -o bigBedHelper.o 2024-04-15T15:29:15.1465448Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bigBed.c -o bigBed.o 2024-04-15T15:29:15.3482398Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chain_io.c -o chain_io.o 2024-04-15T15:29:15.4591202Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c twoBit.c -o twoBit.o 2024-04-15T15:29:15.5564520Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c handlers.c -o handlers.o 2024-04-15T15:29:15.6246269Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o 2024-04-15T15:29:15.6709910Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/memgfx.c -o ucsc/memgfx.o 2024-04-15T15:29:15.6877070Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/binRange.c -o ucsc/binRange.o 2024-04-15T15:29:15.7712393Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/htmlColor.c -o ucsc/htmlColor.o 2024-04-15T15:29:15.8387819Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/sqlList.c -o ucsc/sqlList.o 2024-04-15T15:29:15.9438998Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/tokenizer.c -o ucsc/tokenizer.o 2024-04-15T15:29:16.0371227Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/asParse.c -o ucsc/asParse.o 2024-04-15T15:29:16.1876314Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/basicBed.c -o ucsc/basicBed.o 2024-04-15T15:29:16.4471873Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bigBed.c -o ucsc/bigBed.o 2024-04-15T15:29:16.5432763Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o 2024-04-15T15:29:16.7219116Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bbiRead.c -o ucsc/bbiRead.o 2024-04-15T15:29:16.9022791Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o 2024-04-15T15:29:17.1152066Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o 2024-04-15T15:29:17.4085167Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o 2024-04-15T15:29:17.5020239Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/cirTree.c -o ucsc/cirTree.o 2024-04-15T15:29:17.6890837Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/common.c -o ucsc/common.o 2024-04-15T15:29:18.1153863Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dnaseq.c -o ucsc/dnaseq.o 2024-04-15T15:29:18.1877302Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dnautil.c -o ucsc/dnautil.o 2024-04-15T15:29:18.3218221Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/errAbort.c -o ucsc/errAbort.o 2024-04-15T15:29:18.3581355Z ucsc/errAbort.c: In function ‘getThreadVars’: 2024-04-15T15:29:18.3583020Z ucsc/errAbort.c:255:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2024-04-15T15:29:18.3584485Z 255 | write(STDERR_FILENO, errMsg, strlen(errMsg)); 2024-04-15T15:29:18.3590678Z | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:29:18.4040355Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/hash.c -o ucsc/hash.o 2024-04-15T15:29:18.5365718Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/linefile.c -o ucsc/linefile.o 2024-04-15T15:29:18.8034190Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/localmem.c -o ucsc/localmem.o 2024-04-15T15:29:18.8852451Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/sqlNum.c -o ucsc/sqlNum.o 2024-04-15T15:29:18.9895696Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/zlibFace.c -o ucsc/zlibFace.o 2024-04-15T15:29:19.0617860Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dystring.c -o ucsc/dystring.o 2024-04-15T15:29:19.1450428Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/hmmstats.c -o ucsc/hmmstats.o 2024-04-15T15:29:19.2075059Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/obscure.c -o ucsc/obscure.o 2024-04-15T15:29:19.3244855Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/pipeline.c -o ucsc/pipeline.o 2024-04-15T15:29:19.4857549Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/rangeTree.c -o ucsc/rangeTree.o 2024-04-15T15:29:19.5731296Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/rbTree.c -o ucsc/rbTree.o 2024-04-15T15:29:19.7110902Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/memalloc.c -o ucsc/memalloc.o 2024-04-15T15:29:19.7829490Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dlist.c -o ucsc/dlist.o 2024-04-15T15:29:19.8562160Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/filePath.c -o ucsc/filePath.o 2024-04-15T15:29:19.9277212Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/htmlPage.c -o ucsc/htmlPage.o 2024-04-15T15:29:19.9970383Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/udc.c -o ucsc/udc.o 2024-04-15T15:29:20.3403486Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/net.c -o ucsc/net.o 2024-04-15T15:29:20.5037246Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bits.c -o ucsc/bits.o 2024-04-15T15:29:20.6033526Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/twoBit.c -o ucsc/twoBit.o 2024-04-15T15:29:20.8373170Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o 2024-04-15T15:29:20.9146042Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/internet.c -o ucsc/internet.o 2024-04-15T15:29:21.0005305Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/https.c -o ucsc/https.o 2024-04-15T15:29:21.0906413Z ucsc/https.c: In function ‘openSslInit’: 2024-04-15T15:29:21.0907934Z ucsc/https.c:76:5: warning: ‘ERR_load_SSL_strings’ is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 2024-04-15T15:29:21.0909324Z 76 | ERR_load_SSL_strings(); 2024-04-15T15:29:21.0910212Z | ^~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:29:21.0910967Z In file included from /usr/include/openssl/sslerr.h:17, 2024-04-15T15:29:21.0911859Z from /usr/include/openssl/ssl.h:43, 2024-04-15T15:29:21.0912609Z from ucsc/https.c:8: 2024-04-15T15:29:21.0913521Z /usr/include/openssl/sslerr_legacy.h:29:27: note: declared here 2024-04-15T15:29:21.0914614Z 29 | OSSL_DEPRECATEDIN_3_0 int ERR_load_SSL_strings(void); 2024-04-15T15:29:21.0915481Z | ^~~~~~~~~~~~~~~~~~~~ 2024-04-15T15:29:21.1532358Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/base64.c -o ucsc/base64.o 2024-04-15T15:29:21.2247750Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/verbose.c -o ucsc/verbose.o 2024-04-15T15:29:21.2985274Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/os.c -o ucsc/os.o 2024-04-15T15:29:21.4388463Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/wildcmp.c -o ucsc/wildcmp.o 2024-04-15T15:29:21.5109015Z gcc -I"/usr/local/lib/R/include" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/__w/_temp/Library/S4Vectors/include' -I'/__w/_temp/Library/IRanges/include' -I'/__w/_temp/Library/XVector/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/_portimpl.c -o ucsc/_portimpl.o 2024-04-15T15:29:21.5833247Z gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o rtracklayer.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_rtracklayer.o readGFF.o bbiHelper.o bigWig.o bigBedHelper.o bigBed.o chain_io.o twoBit.o handlers.o utils.o ucsc/memgfx.o ucsc/binRange.o ucsc/htmlColor.o ucsc/sqlList.o ucsc/tokenizer.o ucsc/asParse.o ucsc/basicBed.o ucsc/bigBed.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/errAbort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/filePath.o ucsc/htmlPage.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/twoBit.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -lz -pthread -lssl -lcrypto -lcurl -L/usr/local/lib/R/lib -lR 2024-04-15T15:29:21.6556984Z installing to /__w/_temp/Library/00LOCK-rtracklayer/00new/rtracklayer/libs 2024-04-15T15:29:21.6578896Z ** R 2024-04-15T15:29:21.6746107Z ** data 2024-04-15T15:29:21.6758947Z ** demo 2024-04-15T15:29:21.6765457Z ** inst 2024-04-15T15:29:21.6864417Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:29:33.7007032Z ** help 2024-04-15T15:29:33.7008032Z Creating a generic function for ‘offset’ from package ‘stats’ in package ‘rtracklayer’ 2024-04-15T15:29:33.8549200Z *** installing help indices 2024-04-15T15:29:33.9790796Z ** building package indices 2024-04-15T15:29:34.3537387Z ** installing vignettes 2024-04-15T15:29:34.3590311Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:29:40.6974220Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:29:40.7155157Z ** testing if installed package can be loaded from final location 2024-04-15T15:29:47.2630029Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:29:47.2800059Z * DONE (rtracklayer) 2024-04-15T15:29:47.5626323Z * installing *source* package ‘GenomicFeatures’ ... 2024-04-15T15:29:47.5627932Z ** using staged installation 2024-04-15T15:29:47.5818029Z ** R 2024-04-15T15:29:47.6008386Z ** inst 2024-04-15T15:29:47.6054785Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:29:57.5970420Z ** help 2024-04-15T15:29:57.6902627Z *** installing help indices 2024-04-15T15:29:57.7493728Z ** building package indices 2024-04-15T15:29:57.9643664Z ** installing vignettes 2024-04-15T15:29:57.9689134Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:30:04.8865057Z ** testing if installed package can be loaded from final location 2024-04-15T15:30:12.0016237Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:30:12.0092081Z * DONE (GenomicFeatures) 2024-04-15T15:30:12.3728394Z * installing *source* package ‘BSgenome’ ... 2024-04-15T15:30:12.3730042Z ** using staged installation 2024-04-15T15:30:12.3871239Z ** R 2024-04-15T15:30:12.4051639Z ** inst 2024-04-15T15:30:12.4131035Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:30:25.1566162Z ** help 2024-04-15T15:30:25.2177839Z *** installing help indices 2024-04-15T15:30:25.2571303Z ** building package indices 2024-04-15T15:30:25.4539623Z ** installing vignettes 2024-04-15T15:30:25.4587510Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:30:32.1096156Z ** testing if installed package can be loaded from final location 2024-04-15T15:30:39.6244761Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:30:39.6407390Z * DONE (BSgenome) 2024-04-15T15:30:39.9728157Z * installing *source* package ‘plyranges’ ... 2024-04-15T15:30:39.9729861Z ** using staged installation 2024-04-15T15:30:39.9880747Z ** R 2024-04-15T15:30:40.0057132Z ** inst 2024-04-15T15:30:40.0089221Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:30:49.8267998Z ** help 2024-04-15T15:30:49.9227129Z *** installing help indices 2024-04-15T15:30:49.9861171Z *** copying figures 2024-04-15T15:30:49.9866298Z ** building package indices 2024-04-15T15:30:50.2096304Z ** installing vignettes 2024-04-15T15:30:50.2197389Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:30:57.2947065Z ** testing if installed package can be loaded from final location 2024-04-15T15:31:04.5445191Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:31:04.5505962Z * DONE (plyranges) 2024-04-15T15:31:06.1666363Z * installing *binary* package ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ ... 2024-04-15T15:31:06.2221331Z * DONE (TxDb.Hsapiens.UCSC.hg19.knownGene) 2024-04-15T15:31:29.7562863Z * installing *binary* package ‘BSgenome.Hsapiens.UCSC.hg19’ ... 2024-04-15T15:31:30.5811638Z * DONE (BSgenome.Hsapiens.UCSC.hg19) 2024-04-15T15:31:30.7462387Z 2024-04-15T15:31:30.7462881Z The downloaded source packages are in 2024-04-15T15:31:30.7463652Z ‘/tmp/RtmpyrmPeF/downloaded_packages’ 2024-04-15T15:31:30.8062161Z ── R CMD build ───────────────────────────────────────────────────────────────── 2024-04-15T15:31:30.9671296Z * checking for file ‘/tmp/RtmpyrmPeF/file2bd28fbb725/plotgardener/DESCRIPTION’ ... OK 2024-04-15T15:31:30.9958088Z * preparing ‘plotgardener’: 2024-04-15T15:31:31.0094561Z * checking DESCRIPTION meta-information ... OK 2024-04-15T15:31:31.0099649Z * cleaning src 2024-04-15T15:31:31.2358207Z * checking for LF line-endings in source and make files and shell scripts 2024-04-15T15:31:31.2384233Z * checking for empty or unneeded directories 2024-04-15T15:31:31.2404898Z * looking to see if a ‘data/datalist’ file should be added 2024-04-15T15:31:31.2440866Z * building ‘plotgardener_1.9.5.tar.gz’ 2024-04-15T15:31:31.5632147Z 2024-04-15T15:31:31.5819830Z Installing package into ‘/__w/_temp/Library’ 2024-04-15T15:31:31.5820782Z (as ‘lib’ is unspecified) 2024-04-15T15:31:31.9342776Z * installing *source* package ‘plotgardener’ ... 2024-04-15T15:31:31.9343598Z ** using staged installation 2024-04-15T15:31:31.9500557Z ** libs 2024-04-15T15:31:31.9619034Z using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:31:31.9643081Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o 2024-04-15T15:31:35.0919135Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c checkRow.cpp -o checkRow.o 2024-04-15T15:31:37.8934537Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rebinBigwig.cpp -o rebinBigwig.o 2024-04-15T15:31:40.6963595Z g++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o plotgardener.so RcppExports.o checkRow.o rebinBigwig.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:31:40.7637479Z installing to /__w/_temp/Library/00LOCK-plotgardener/00new/plotgardener/libs 2024-04-15T15:31:40.7660861Z ** R 2024-04-15T15:31:41.1315029Z ** inst 2024-04-15T15:31:41.1337843Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:31:52.4110335Z ** help 2024-04-15T15:31:52.5586808Z *** installing help indices 2024-04-15T15:31:52.6752716Z *** copying figures 2024-04-15T15:31:52.6772454Z ** building package indices 2024-04-15T15:31:52.9096111Z ** installing vignettes 2024-04-15T15:31:52.9136989Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:32:00.2351084Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:32:00.2531427Z ** testing if installed package can be loaded from final location 2024-04-15T15:32:07.9100197Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:32:07.9221439Z * DONE (plotgardener) 2024-04-15T15:32:08.1343721Z ##[group]Run ## Pass #2 at installing dependencies 2024-04-15T15:32:08.1344217Z ## Pass #2 at installing dependencies 2024-04-15T15:32:08.1344714Z ## This pass does not use AnVIL and will thus update any packages 2024-04-15T15:32:08.1345248Z ## that have seen been updated in Bioconductor 2024-04-15T15:32:08.1345941Z message(paste('****', Sys.time(), 'pass number 2 at installing dependencies: any remaining dependencies ****')) 2024-04-15T15:32:08.1346967Z remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, force = TRUE) 2024-04-15T15:32:08.1347748Z shell: Rscript {0} 2024-04-15T15:32:08.1347975Z env: 2024-04-15T15:32:08.1348180Z has_testthat: false 2024-04-15T15:32:08.1348421Z run_covr: false 2024-04-15T15:32:08.1348666Z run_pkgdown: false 2024-04-15T15:32:08.1348904Z has_RUnit: false 2024-04-15T15:32:08.1349137Z cache-version: cache-v1 2024-04-15T15:32:08.1349426Z run_docker: false 2024-04-15T15:32:08.1350007Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:32:08.1350507Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:32:08.1350960Z NOT_CRAN: true 2024-04-15T15:32:08.1351175Z TZ: UTC 2024-04-15T15:32:08.1351546Z GITHUB_TOKEN: *** 2024-04-15T15:32:08.1351888Z GITHUB_PAT: *** 2024-04-15T15:32:08.1352122Z ##[endgroup] 2024-04-15T15:32:08.3797234Z **** 2024-04-15 15:32:08.37834 pass number 2 at installing dependencies: any remaining dependencies **** 2024-04-15T15:32:09.4130649Z 'getOption("repos")' replaces Bioconductor standard repositories, see 2024-04-15T15:32:09.4131807Z 'help("repositories", package = "BiocManager")' for details. 2024-04-15T15:32:09.4132551Z Replacement repositories: 2024-04-15T15:32:09.4133204Z CRAN: https://cloud.r-project.org 2024-04-15T15:32:12.7509365Z 2024-04-15T15:32:12.8174168Z ── R CMD build ───────────────────────────────────────────────────────────────── 2024-04-15T15:32:12.9803718Z * checking for file ‘/tmp/RtmpJV9yLg/file2800351aa08/plotgardener/DESCRIPTION’ ... OK 2024-04-15T15:32:13.0085166Z * preparing ‘plotgardener’: 2024-04-15T15:32:13.0223635Z * checking DESCRIPTION meta-information ... OK 2024-04-15T15:32:13.0224516Z * cleaning src 2024-04-15T15:32:13.1339555Z * installing the package to build vignettes 2024-04-15T15:33:02.4789423Z * creating vignettes ... OK 2024-04-15T15:33:02.4865544Z * cleaning src 2024-04-15T15:33:02.9260082Z * checking for LF line-endings in source and make files and shell scripts 2024-04-15T15:33:02.9289742Z * checking for empty or unneeded directories 2024-04-15T15:33:02.9311807Z * looking to see if a ‘data/datalist’ file should be added 2024-04-15T15:33:02.9347111Z * building ‘plotgardener_1.9.5.tar.gz’ 2024-04-15T15:33:03.3038512Z 2024-04-15T15:33:03.3272516Z Installing package into ‘/__w/_temp/Library’ 2024-04-15T15:33:03.3273542Z (as ‘lib’ is unspecified) 2024-04-15T15:33:03.6908178Z * installing *source* package ‘plotgardener’ ... 2024-04-15T15:33:03.6937440Z ** using staged installation 2024-04-15T15:33:03.7098506Z ** libs 2024-04-15T15:33:03.7216928Z using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:33:03.7241697Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o 2024-04-15T15:33:06.8507309Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c checkRow.cpp -o checkRow.o 2024-04-15T15:33:09.6045149Z g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Wformat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rebinBigwig.cpp -o rebinBigwig.o 2024-04-15T15:33:12.3874479Z g++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o plotgardener.so RcppExports.o checkRow.o rebinBigwig.o -L/usr/local/lib/R/lib -lR 2024-04-15T15:33:12.4560952Z installing to /__w/_temp/Library/00LOCK-plotgardener/00new/plotgardener/libs 2024-04-15T15:33:12.4583916Z ** R 2024-04-15T15:33:12.8296482Z ** inst 2024-04-15T15:33:12.8330603Z ** byte-compile and prepare package for lazy loading 2024-04-15T15:33:24.2074335Z ** help 2024-04-15T15:33:24.3955284Z *** installing help indices 2024-04-15T15:33:24.5264257Z *** copying figures 2024-04-15T15:33:24.5282264Z ** building package indices 2024-04-15T15:33:24.7790206Z ** installing vignettes 2024-04-15T15:33:24.7841324Z ** testing if installed package can be loaded from temporary location 2024-04-15T15:33:32.2009573Z ** checking absolute paths in shared objects and dynamic libraries 2024-04-15T15:33:32.2191606Z ** testing if installed package can be loaded from final location 2024-04-15T15:33:39.7826457Z ** testing if installed package keeps a record of temporary installation path 2024-04-15T15:33:39.7949382Z * DONE (plotgardener) 2024-04-15T15:33:39.8500031Z ##[group]Run options(width = 100) 2024-04-15T15:33:39.8500428Z options(width = 100) 2024-04-15T15:33:39.8500790Z pkgs <- installed.packages()[, "Package"] 2024-04-15T15:33:39.8501267Z sessioninfo::session_info(pkgs, include_base = TRUE) 2024-04-15T15:33:39.8501801Z shell: Rscript {0} 2024-04-15T15:33:39.8502027Z env: 2024-04-15T15:33:39.8502230Z has_testthat: false 2024-04-15T15:33:39.8502475Z run_covr: false 2024-04-15T15:33:39.8502706Z run_pkgdown: false 2024-04-15T15:33:39.8502946Z has_RUnit: false 2024-04-15T15:33:39.8503180Z cache-version: cache-v1 2024-04-15T15:33:39.8503436Z run_docker: false 2024-04-15T15:33:39.8503718Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:33:39.8504215Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:33:39.8504675Z NOT_CRAN: true 2024-04-15T15:33:39.8504896Z TZ: UTC 2024-04-15T15:33:39.8505339Z GITHUB_TOKEN: *** 2024-04-15T15:33:39.8505727Z GITHUB_PAT: *** 2024-04-15T15:33:39.8505955Z ##[endgroup] 2024-04-15T15:33:40.4407306Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2024-04-15T15:33:40.4408200Z setting value 2024-04-15T15:33:40.4408885Z version R Under development (unstable) (2024-04-10 r86396) 2024-04-15T15:33:40.4409637Z os Ubuntu 22.04.4 LTS 2024-04-15T15:33:40.4409970Z system x86_64, linux-gnu 2024-04-15T15:33:40.4410346Z ui X11 2024-04-15T15:33:40.4410560Z language (EN) 2024-04-15T15:33:40.4410811Z collate en_US.UTF-8 2024-04-15T15:33:40.4411072Z ctype en_US.UTF-8 2024-04-15T15:33:40.4411297Z tz UTC 2024-04-15T15:33:40.4411938Z date 2024-04-15 2024-04-15T15:33:40.4412265Z pandoc 3.1.1 @ /usr/local/bin/pandoc 2024-04-15T15:33:40.4412502Z 2024-04-15T15:33:40.4412876Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2024-04-15T15:33:40.4413455Z package * version date (UTC) lib source 2024-04-15T15:33:40.4414005Z abind 1.4-5 2016-07-21 [1] CRAN (R 4.4.0) 2024-04-15T15:33:40.4414554Z AnnotationDbi 1.65.2 2023-11-03 [1] Bioconductor 2024-04-15T15:33:40.4415162Z AnnotationHub 3.11.4 2024-04-05 [1] 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2024-04-15T15:33:40.4622569Z has_testthat: false 2024-04-15T15:33:40.4622948Z run_covr: false 2024-04-15T15:33:40.4623278Z run_pkgdown: false 2024-04-15T15:33:40.4623631Z has_RUnit: false 2024-04-15T15:33:40.4623991Z cache-version: cache-v1 2024-04-15T15:33:40.4624371Z run_docker: false 2024-04-15T15:33:40.4624886Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:33:40.4625477Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:33:40.4626036Z NOT_CRAN: true 2024-04-15T15:33:40.4626413Z TZ: UTC 2024-04-15T15:33:40.4626847Z GITHUB_TOKEN: *** 2024-04-15T15:33:40.4627306Z GITHUB_PAT: *** 2024-04-15T15:33:40.4627729Z _R_CHECK_CRAN_INCOMING_: false 2024-04-15T15:33:40.4628091Z DISPLAY: 99 2024-04-15T15:33:40.4628402Z ##[endgroup] 2024-04-15T15:33:40.9441777Z ── R CMD build ───────────────────────────────────────────────────────────────── 2024-04-15T15:33:41.3870718Z * checking for file ‘.../DESCRIPTION’ ... OK 2024-04-15T15:33:41.4133734Z * preparing ‘plotgardener’: 2024-04-15T15:33:41.4271583Z * checking DESCRIPTION meta-information ... OK 2024-04-15T15:33:41.4277176Z * cleaning src 2024-04-15T15:33:41.5365567Z * installing the package to build vignettes 2024-04-15T15:34:30.9052060Z * creating vignettes ... OK 2024-04-15T15:34:30.9134066Z * cleaning src 2024-04-15T15:34:31.3626167Z * checking for LF line-endings in source and make files and shell scripts 2024-04-15T15:34:31.3655299Z * checking for empty or unneeded directories 2024-04-15T15:34:31.3673508Z * looking to see if a ‘data/datalist’ file should be added 2024-04-15T15:34:31.3707994Z * building ‘plotgardener_1.9.5.tar.gz’ 2024-04-15T15:34:31.7329232Z 2024-04-15T15:34:31.8650637Z ── R CMD check ───────────────────────────────────────────────────────────────── 2024-04-15T15:34:32.0479561Z * using log directory ‘/__w/plotgardener/plotgardener/check/plotgardener.Rcheck’ 2024-04-15T15:34:32.0485615Z * using R Under development (unstable) (2024-04-10 r86396) 2024-04-15T15:34:32.0486616Z * using platform: x86_64-pc-linux-gnu 2024-04-15T15:34:32.0487187Z * R was compiled by 2024-04-15T15:34:32.0487763Z gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 2024-04-15T15:34:32.0488508Z GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 2024-04-15T15:34:32.0489125Z * running under: Ubuntu 22.04.4 LTS 2024-04-15T15:34:32.0492532Z * using session charset: UTF-8 2024-04-15T15:34:32.2466780Z * using options ‘--no-manual --no-vignettes’ 2024-04-15T15:34:32.2484103Z * checking for file ‘plotgardener/DESCRIPTION’ ... OK 2024-04-15T15:34:32.2487763Z * this is package ‘plotgardener’ version ‘1.9.5’ 2024-04-15T15:34:32.2488486Z * package encoding: UTF-8 2024-04-15T15:34:32.2542258Z * checking package namespace information ... OK 2024-04-15T15:34:33.0232172Z * checking package dependencies ... OK 2024-04-15T15:34:33.0248481Z * checking if this is a source package ... OK 2024-04-15T15:34:33.0252547Z * checking if there is a namespace ... OK 2024-04-15T15:34:33.0276534Z * checking for hidden files and directories ... OK 2024-04-15T15:34:33.0305596Z * checking for portable file names ... OK 2024-04-15T15:34:33.0318136Z * checking for sufficient/correct file permissions ... OK 2024-04-15T15:35:09.4767278Z * checking whether package ‘plotgardener’ can be installed ... OK 2024-04-15T15:35:09.4769144Z * used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ 2024-04-15T15:35:09.5127082Z * checking installed package size ... NOTE 2024-04-15T15:35:09.5128053Z installed size is 5.4Mb 2024-04-15T15:35:09.5133259Z sub-directories of 1Mb or more: 2024-04-15T15:35:09.5138957Z R 1.5Mb 2024-04-15T15:35:09.5139391Z help 1.4Mb 2024-04-15T15:35:09.5139801Z libs 1.4Mb 2024-04-15T15:35:09.5938423Z * checking package directory ... OK 2024-04-15T15:35:09.5943255Z * checking ‘build’ directory ... OK 2024-04-15T15:35:09.7476094Z * checking DESCRIPTION meta-information ... OK 2024-04-15T15:35:09.7480170Z * checking top-level files ... OK 2024-04-15T15:35:09.7494437Z * checking for left-over files ... OK 2024-04-15T15:35:09.9498207Z * checking index information ... OK 2024-04-15T15:35:10.6313557Z * checking package subdirectories ... OK 2024-04-15T15:35:10.6901000Z * checking code files for non-ASCII characters ... OK 2024-04-15T15:35:10.7799412Z * checking R files for syntax errors ... OK 2024-04-15T15:35:18.1807398Z * checking whether the package can be loaded ... OK 2024-04-15T15:35:25.3679251Z * checking whether the package can be loaded with stated dependencies ... OK 2024-04-15T15:35:32.5984338Z * checking whether the package can be unloaded cleanly ... OK 2024-04-15T15:35:39.7135018Z * checking whether the namespace can be loaded with stated dependencies ... OK 2024-04-15T15:35:47.0532063Z * checking whether the namespace can be unloaded cleanly ... OK 2024-04-15T15:35:54.4601121Z * checking loading without being on the library search path ... OK 2024-04-15T15:36:09.2017012Z * checking whether startup messages can be suppressed ... OK 2024-04-15T15:36:18.5648214Z * checking dependencies in R code ... OK 2024-04-15T15:36:26.3581200Z * checking S3 generic/method consistency ... OK 2024-04-15T15:36:33.3791078Z * checking replacement functions ... OK 2024-04-15T15:36:41.6113440Z * checking foreign function calls ... OK 2024-04-15T15:37:05.6082589Z * checking R code for possible problems ... NOTE 2024-04-15T15:37:05.6083875Z pgParams: no visible binding for global variable ‘width’ 2024-04-15T15:37:05.6094427Z pgParams: no visible binding for global variable ‘strand’ 2024-04-15T15:37:05.6095250Z Undefined global functions or variables: 2024-04-15T15:37:05.6097078Z strand width 2024-04-15T15:37:06.1363069Z * checking Rd files ... NOTE 2024-04-15T15:37:06.1364304Z checkRd: (-1) annoDomains.Rd:28-29: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1365575Z checkRd: (-1) annoDomains.Rd:30-31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1366831Z checkRd: (-1) annoDomains.Rd:32-33: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1397508Z checkRd: (-1) annoDomains.Rd:34-35: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1398773Z checkRd: (-1) annoGenomeLabel.Rd:47: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1400002Z checkRd: (-1) annoGenomeLabel.Rd:48-49: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1401344Z checkRd: (-1) annoGenomeLabel.Rd:50-51: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1403030Z checkRd: (-1) annoGenomeLabel.Rd:69: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1404309Z checkRd: (-1) annoGenomeLabel.Rd:70-72: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1405441Z checkRd: (-1) annoHeatmapLegend.Rd:33: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1406336Z checkRd: (-1) annoHeatmapLegend.Rd:34: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1407238Z checkRd: (-1) annoPixels.Rd:30: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1408294Z checkRd: (-1) annoPixels.Rd:31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1409486Z checkRd: (-1) annoPixels.Rd:32: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1410638Z checkRd: (-1) annoPixels.Rd:39-40: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1411786Z checkRd: (-1) annoPixels.Rd:41-42: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1413216Z checkRd: (-1) annoPixels.Rd:43-44: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1414375Z checkRd: (-1) annoPixels.Rd:45-46: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1415503Z checkRd: (-1) annoSegments.Rd:64: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1416475Z checkRd: (-1) annoSegments.Rd:65: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1417135Z checkRd: (-1) annoSegments.Rd:66: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1417761Z checkRd: (-1) annoXaxis.Rd:31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1418384Z checkRd: (-1) annoXaxis.Rd:32: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1418993Z checkRd: (-1) annoYaxis.Rd:31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1419727Z checkRd: (-1) annoYaxis.Rd:32: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1420410Z checkRd: (-1) plotGenomeLabel.Rd:58: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1421111Z checkRd: (-1) plotGenomeLabel.Rd:59-60: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1421843Z checkRd: (-1) plotGenomeLabel.Rd:61-62: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1422548Z checkRd: (-1) plotGenomeLabel.Rd:80: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1423240Z checkRd: (-1) plotGenomeLabel.Rd:81-83: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1423934Z checkRd: (-1) plotHicRectangle.Rd:53: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1424612Z checkRd: (-1) plotHicRectangle.Rd:54: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1425290Z checkRd: (-1) plotHicRectangle.Rd:55: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1425947Z checkRd: (-1) plotHicSquare.Rd:57: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1426735Z checkRd: (-1) plotHicSquare.Rd:58: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1427409Z checkRd: (-1) plotHicSquare.Rd:59: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1428058Z checkRd: (-1) plotHicSquare.Rd:96: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1428706Z checkRd: (-1) plotHicSquare.Rd:97: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1429346Z checkRd: (-1) plotHicSquare.Rd:98: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1430286Z checkRd: (-1) plotHicTriangle.Rd:53: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1430961Z checkRd: (-1) plotHicTriangle.Rd:54: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1431642Z checkRd: (-1) plotHicTriangle.Rd:55: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1432308Z checkRd: (-1) plotIdeogram.Rd:40: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1432953Z checkRd: (-1) plotIdeogram.Rd:41: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1433591Z checkRd: (-1) plotLegend.Rd:42: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1434443Z checkRd: (-1) plotLegend.Rd:43: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1435085Z checkRd: (-1) plotManhattan.Rd:45: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1435757Z checkRd: (-1) plotManhattan.Rd:46-47: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1436432Z checkRd: (-1) plotManhattan.Rd:48-49: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1437105Z checkRd: (-1) plotManhattan.Rd:50-51: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1437796Z checkRd: (-1) plotMultiSignal.Rd:103-104: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1438515Z checkRd: (-1) plotMultiSignal.Rd:105-106: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1439181Z checkRd: (-1) plotPairs.Rd:58: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1439800Z checkRd: (-1) plotPairs.Rd:59: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1440791Z checkRd: (-1) plotPairsArches.Rd:56: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1441477Z checkRd: (-1) plotPairsArches.Rd:57: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1442140Z checkRd: (-1) plotPairsArches.Rd:79: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1442797Z checkRd: (-1) plotPairsArches.Rd:80: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1443472Z checkRd: (-1) plotRanges.Rd:62: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1444127Z checkRd: (-1) plotRanges.Rd:63: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1444747Z checkRd: (-1) plotRanges.Rd:70: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1445360Z checkRd: (-1) plotRanges.Rd:71: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1446001Z checkRd: (-1) plotSegments.Rd:68: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1446648Z checkRd: (-1) plotSegments.Rd:69: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1447294Z checkRd: (-1) plotSegments.Rd:70: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1447942Z checkRd: (-1) plotSignal.Rd:104: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1448577Z checkRd: (-1) plotSignal.Rd:105: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1449229Z checkRd: (-1) plotTranscripts.Rd:88: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1449894Z checkRd: (-1) plotTranscripts.Rd:89: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1450577Z checkRd: (-1) plotTranscripts.Rd:90: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1451263Z checkRd: (-1) plotTranscripts.Rd:91-92: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1451944Z checkRd: (-1) readBigwig.Rd:29: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1452575Z checkRd: (-1) readBigwig.Rd:30: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1453213Z checkRd: (-1) readBigwig.Rd:31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1453838Z checkRd: (-1) readHic.Rd:54: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1454440Z checkRd: (-1) readHic.Rd:55: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1455020Z checkRd: (-1) readHic.Rd:68: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1455614Z checkRd: (-1) readHic.Rd:69: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1456198Z checkRd: (-1) readHic.Rd:70: Lost braces in \itemize; meant \describe ? 2024-04-15T15:37:06.1826913Z * checking Rd metadata ... OK 2024-04-15T15:37:06.3657410Z * checking Rd cross-references ... OK 2024-04-15T15:37:13.3673553Z * checking for missing documentation entries ... OK 2024-04-15T15:37:34.6058967Z * checking for code/documentation mismatches ... OK 2024-04-15T15:37:42.7164534Z * checking Rd \usage sections ... OK 2024-04-15T15:37:42.9891071Z * checking Rd contents ... OK 2024-04-15T15:37:43.2496279Z * checking for unstated dependencies in examples ... OK 2024-04-15T15:37:43.4186637Z * checking R/sysdata.rda ... OK 2024-04-15T15:37:43.4207758Z * checking line endings in C/C++/Fortran sources/headers ... OK 2024-04-15T15:37:43.4965143Z * checking compiled code ... OK 2024-04-15T15:37:43.7182758Z * checking installed files from ‘inst/doc’ ... OK 2024-04-15T15:37:43.9293958Z * checking files in ‘vignettes’ ... OK 2024-04-15T15:38:31.0329086Z * checking examples ... OK 2024-04-15T15:38:31.0336917Z Examples with CPU (user + system) or elapsed time > 5s 2024-04-15T15:38:31.0361091Z user system elapsed 2024-04-15T15:38:31.0362020Z plotIdeogram 7.044 0.747 9.497 2024-04-15T15:38:31.0362696Z plotRaster 6.688 0.167 6.856 2024-04-15T15:38:31.1024465Z * checking for unstated dependencies in ‘tests’ ... OK 2024-04-15T15:38:31.2530992Z * checking tests ... 2024-04-15T15:39:00.1992790Z Running ‘testthat.R’ 2024-04-15T15:39:00.2065868Z OK 2024-04-15T15:39:00.5640256Z * checking for unstated dependencies in vignettes ... OK 2024-04-15T15:39:00.5953463Z * checking package vignettes ... OK 2024-04-15T15:39:00.5958171Z * checking running R code from vignettes ... SKIPPED 2024-04-15T15:39:00.5973262Z * checking re-building of vignette outputs ... SKIPPED 2024-04-15T15:39:00.5973954Z * DONE 2024-04-15T15:39:00.5974292Z Status: 3 NOTEs 2024-04-15T15:39:00.5974663Z See 2024-04-15T15:39:00.5975504Z ‘/__w/plotgardener/plotgardener/check/plotgardener.Rcheck/00check.log’ 2024-04-15T15:39:00.5978439Z for details. 2024-04-15T15:39:00.5978711Z 2024-04-15T15:39:00.7796010Z ── R CMD check results ───────────────────────────────── plotgardener 1.9.5 ──── 2024-04-15T15:39:00.7805355Z Duration: 4m 29s 2024-04-15T15:39:00.7805672Z 2024-04-15T15:39:00.7811605Z ❯ checking installed package size ... NOTE 2024-04-15T15:39:00.7812293Z installed size is 5.4Mb 2024-04-15T15:39:00.7812879Z sub-directories of 1Mb or more: 2024-04-15T15:39:00.7813627Z R 1.5Mb 2024-04-15T15:39:00.7814089Z help 1.4Mb 2024-04-15T15:39:00.7814727Z libs 1.4Mb 2024-04-15T15:39:00.7814968Z 2024-04-15T15:39:00.7815429Z ❯ checking R code for possible problems ... NOTE 2024-04-15T15:39:00.7816355Z pgParams: no visible binding for global variable ‘width’ 2024-04-15T15:39:00.7817457Z pgParams: no visible binding for global variable ‘strand’ 2024-04-15T15:39:00.7818643Z Undefined global functions or variables: 2024-04-15T15:39:00.7819410Z strand width 2024-04-15T15:39:00.7819676Z 2024-04-15T15:39:00.7820347Z ❯ checking Rd files ... NOTE 2024-04-15T15:39:00.7821373Z checkRd: (-1) annoDomains.Rd:28-29: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7822591Z checkRd: (-1) annoDomains.Rd:30-31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7823793Z checkRd: (-1) annoDomains.Rd:32-33: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7824973Z checkRd: (-1) annoDomains.Rd:34-35: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7826200Z checkRd: (-1) annoGenomeLabel.Rd:47: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7827428Z checkRd: (-1) annoGenomeLabel.Rd:48-49: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7828670Z checkRd: (-1) annoGenomeLabel.Rd:50-51: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7830100Z checkRd: (-1) annoGenomeLabel.Rd:69: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7831366Z checkRd: (-1) annoGenomeLabel.Rd:70-72: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7832666Z checkRd: (-1) annoHeatmapLegend.Rd:33: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7833903Z checkRd: (-1) annoHeatmapLegend.Rd:34: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7835084Z checkRd: (-1) annoPixels.Rd:30: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7836193Z checkRd: (-1) annoPixels.Rd:31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7838103Z checkRd: (-1) annoPixels.Rd:32: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7839249Z checkRd: (-1) annoPixels.Rd:39-40: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7840394Z checkRd: (-1) annoPixels.Rd:41-42: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7841540Z checkRd: (-1) annoPixels.Rd:43-44: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7842684Z checkRd: (-1) annoPixels.Rd:45-46: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7843838Z checkRd: (-1) annoSegments.Rd:64: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7844973Z checkRd: (-1) annoSegments.Rd:65: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7846115Z checkRd: (-1) annoSegments.Rd:66: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7847241Z checkRd: (-1) annoXaxis.Rd:31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7848555Z checkRd: (-1) annoXaxis.Rd:32: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7849670Z checkRd: (-1) annoYaxis.Rd:31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7850766Z checkRd: (-1) annoYaxis.Rd:32: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7851937Z checkRd: (-1) plotGenomeLabel.Rd:58: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7853171Z checkRd: (-1) plotGenomeLabel.Rd:59-60: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7854420Z checkRd: (-1) plotGenomeLabel.Rd:61-62: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7855647Z checkRd: (-1) plotGenomeLabel.Rd:80: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7856880Z checkRd: (-1) plotGenomeLabel.Rd:81-83: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7858124Z checkRd: (-1) plotHicRectangle.Rd:53: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7859363Z checkRd: (-1) plotHicRectangle.Rd:54: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7860591Z checkRd: (-1) plotHicRectangle.Rd:55: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7861794Z checkRd: (-1) plotHicSquare.Rd:57: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7862955Z checkRd: (-1) plotHicSquare.Rd:58: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7864110Z checkRd: (-1) plotHicSquare.Rd:59: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7865244Z checkRd: (-1) plotHicSquare.Rd:96: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7866375Z checkRd: (-1) plotHicSquare.Rd:97: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7867539Z checkRd: (-1) plotHicSquare.Rd:98: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7868708Z checkRd: (-1) plotHicTriangle.Rd:53: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7870077Z checkRd: (-1) plotHicTriangle.Rd:54: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7871407Z checkRd: (-1) plotHicTriangle.Rd:55: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7872638Z checkRd: (-1) plotIdeogram.Rd:40: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7873789Z checkRd: (-1) plotIdeogram.Rd:41: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7874931Z checkRd: (-1) plotLegend.Rd:42: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7876063Z checkRd: (-1) plotLegend.Rd:43: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7877206Z checkRd: (-1) plotManhattan.Rd:45: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7878393Z checkRd: (-1) plotManhattan.Rd:46-47: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7879278Z checkRd: (-1) plotManhattan.Rd:48-49: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7879972Z checkRd: (-1) plotManhattan.Rd:50-51: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7880699Z checkRd: (-1) plotMultiSignal.Rd:103-104: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7881697Z checkRd: (-1) plotMultiSignal.Rd:105-106: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7882393Z checkRd: (-1) plotPairs.Rd:58: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7883019Z checkRd: (-1) plotPairs.Rd:59: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7883673Z checkRd: (-1) plotPairsArches.Rd:56: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7884354Z checkRd: (-1) plotPairsArches.Rd:57: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7885013Z checkRd: (-1) plotPairsArches.Rd:79: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7885668Z checkRd: (-1) plotPairsArches.Rd:80: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7886337Z checkRd: (-1) plotRanges.Rd:62: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7886979Z checkRd: (-1) plotRanges.Rd:63: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7887777Z checkRd: (-1) plotRanges.Rd:70: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7888420Z checkRd: (-1) plotRanges.Rd:71: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7889073Z checkRd: (-1) plotSegments.Rd:68: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7889715Z checkRd: (-1) plotSegments.Rd:69: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7890362Z checkRd: (-1) plotSegments.Rd:70: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7891020Z checkRd: (-1) plotSignal.Rd:104: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7891665Z checkRd: (-1) plotSignal.Rd:105: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7892333Z checkRd: (-1) plotTranscripts.Rd:88: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7893016Z checkRd: (-1) plotTranscripts.Rd:89: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7893680Z checkRd: (-1) plotTranscripts.Rd:90: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7894368Z checkRd: (-1) plotTranscripts.Rd:91-92: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7895049Z checkRd: (-1) readBigwig.Rd:29: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7895686Z checkRd: (-1) readBigwig.Rd:30: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7896317Z checkRd: (-1) readBigwig.Rd:31: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7896940Z checkRd: (-1) readHic.Rd:54: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7897560Z checkRd: (-1) readHic.Rd:55: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7898165Z checkRd: (-1) readHic.Rd:68: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7898768Z checkRd: (-1) readHic.Rd:69: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7899369Z checkRd: (-1) readHic.Rd:70: Lost braces in \itemize; meant \describe ? 2024-04-15T15:39:00.7899707Z 2024-04-15T15:39:00.7899993Z 0 errors ✔ | 0 warnings ✔ | 3 notes ✖ 2024-04-15T15:39:00.7974044Z ##[group]Run BiocCheck::BiocCheck( 2024-04-15T15:39:00.7974424Z BiocCheck::BiocCheck( 2024-04-15T15:39:00.7974793Z  dir('check', 'tar.gz$', full.names = TRUE), 2024-04-15T15:39:00.7975200Z  `quit-with-status` = TRUE, 2024-04-15T15:39:00.7975544Z  `no-check-R-ver` = TRUE, 2024-04-15T15:39:00.7975879Z  `no-check-bioc-help` = TRUE 2024-04-15T15:39:00.7976186Z ) 2024-04-15T15:39:00.7976460Z shell: Rscript {0} 2024-04-15T15:39:00.7976685Z env: 2024-04-15T15:39:00.7976879Z has_testthat: false 2024-04-15T15:39:00.7977124Z run_covr: false 2024-04-15T15:39:00.7977361Z run_pkgdown: false 2024-04-15T15:39:00.7977601Z has_RUnit: false 2024-04-15T15:39:00.7977842Z cache-version: cache-v1 2024-04-15T15:39:00.7978097Z run_docker: false 2024-04-15T15:39:00.7978361Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2024-04-15T15:39:00.7979069Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2024-04-15T15:39:00.7979550Z NOT_CRAN: true 2024-04-15T15:39:00.7979766Z TZ: UTC 2024-04-15T15:39:00.7980135Z GITHUB_TOKEN: *** 2024-04-15T15:39:00.7980471Z GITHUB_PAT: *** 2024-04-15T15:39:00.7980698Z DISPLAY: 99 2024-04-15T15:39:00.7980905Z ##[endgroup] 2024-04-15T15:39:32.0117644Z ─ BiocCheckVersion: 1.39.32 2024-04-15T15:39:32.0118309Z ─ BiocVersion: 3.19 2024-04-15T15:39:32.0118663Z ─ Package: plotgardener 2024-04-15T15:39:32.0119148Z ─ PackageVersion: 1.9.5 2024-04-15T15:39:32.0119836Z ─ sourceDir: /tmp/RtmpmOU0wt/file2e246e03e4/plotgardener 2024-04-15T15:39:32.0122216Z ─ installDir: /tmp/RtmpmOU0wt/file2e243a3d5d2f 2024-04-15T15:39:32.0123460Z ─ BiocCheckDir: /__w/plotgardener/plotgardener/check/plotgardener.BiocCheck 2024-04-15T15:39:32.0124373Z ─ platform: unix 2024-04-15T15:39:32.0124855Z ─ isTarBall: TRUE 2024-04-15T15:39:32.0125137Z 2024-04-15T15:39:32.0131912Z * Installing package... 2024-04-15T15:39:32.0132481Z * Checking for deprecated package usage... 2024-04-15T15:39:32.4158461Z adding rname 'https://bioconductor.org/checkResults/3.18/bioc-LATEST/meat-index.dcf' 2024-04-15T15:39:32.7266935Z adding rname 'https://bioconductor.org/checkResults/3.19/bioc-LATEST/meat-index.dcf' 2024-04-15T15:39:32.8945310Z * Checking for remote package usage... 2024-04-15T15:39:32.8955055Z * Checking for 'LazyData: true' usage... 2024-04-15T15:39:32.8963485Z * Checking version number... 2024-04-15T15:39:32.8967078Z * Checking for version number mismatch... 2024-04-15T15:39:32.8976264Z * Checking version number validity... 2024-04-15T15:39:32.8996493Z * Checking package size... 2024-04-15T15:39:33.3937579Z * Checking individual file sizes... 2024-04-15T15:39:33.4886026Z * Checking biocViews... 2024-04-15T15:39:33.4892603Z * Checking that biocViews are present... 2024-04-15T15:39:33.4916130Z * Checking package type based on biocViews... 2024-04-15T15:39:33.4969950Z Software 2024-04-15T15:39:33.4973627Z * Checking for non-trivial biocViews... 2024-04-15T15:39:33.9645269Z * Checking that biocViews come from the same category... 2024-04-15T15:39:33.9686601Z * Checking biocViews validity... 2024-04-15T15:39:33.9695073Z * Checking for recommended biocViews... 2024-04-15T15:39:34.9142543Z * Checking build system compatibility... 2024-04-15T15:39:34.9150036Z * Checking for blank lines in DESCRIPTION... 2024-04-15T15:39:34.9153459Z * Checking if DESCRIPTION is well formatted... 2024-04-15T15:39:34.9161798Z * Checking for proper Description: field... 2024-04-15T15:39:34.9171252Z * Checking for whitespace in DESCRIPTION field names... 2024-04-15T15:39:34.9175000Z * Checking that Package field matches directory/tarball name... 2024-04-15T15:39:34.9178480Z * Checking for Version: field... 2024-04-15T15:39:34.9181786Z * Checking for valid maintainer... 2024-04-15T15:39:34.9234157Z * Checking License: for restrictive use... 2024-04-15T15:39:34.9280476Z * Checking for recommended DESCRIPTION fields... 2024-04-15T15:39:34.9285631Z * Checking for Bioconductor software dependencies... 2024-04-15T15:39:35.6430089Z Bioconductor dependencies found in Imports & Depends (20%). 2024-04-15T15:39:35.6432515Z * Checking for pinned package versions in DESCRIPTION... 2024-04-15T15:39:35.6435181Z * Checking DESCRIPTION/NAMESPACE consistency... 2024-04-15T15:39:42.8183293Z * Checking .Rbuildignore... 2024-04-15T15:39:42.8185975Z * Checking for stray BiocCheck output folders... 2024-04-15T15:39:42.8201277Z * Checking vignette directory... 2024-04-15T15:39:44.6134364Z * Checking package installation calls in R code... 2024-04-15T15:39:46.2977197Z * Checking for library/require of plotgardener... 2024-04-15T15:39:46.4927333Z * Checking coding practice... 2024-04-15T15:39:47.8702552Z * NOTE: Avoid 'cat' and 'print' outside of 'show' methods 2024-04-15T15:39:49.2954536Z * Checking parsed R code in R directory, examples, vignettes... 2024-04-15T15:39:50.0505948Z * NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 50 2024-04-15T15:39:50.0507767Z times) 2024-04-15T15:39:50.0508323Z * Checking function lengths... 2024-04-15T15:39:56.8091599Z * NOTE: The recommended function length is 50 lines or less. There 2024-04-15T15:39:56.8092391Z are 76 functions greater than 50 lines. 2024-04-15T15:39:56.8096471Z * Checking man page documentation... 2024-04-15T15:39:57.3430415Z * Checking package NEWS... 2024-04-15T15:39:57.3753925Z * Checking unit tests... 2024-04-15T15:39:57.3757182Z * Checking skip_on_bioc() in tests... 2024-04-15T15:39:57.4118302Z * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, 2024-04-15T15:39:57.4119119Z and vignette source... 2024-04-15T15:39:57.5060405Z * NOTE: Consider shorter lines; 15 lines (0%) are > 80 characters 2024-04-15T15:39:57.5061175Z long. 2024-04-15T15:39:57.5067399Z * NOTE: Consider multiples of 4 spaces for line indents; 141 lines 2024-04-15T15:39:57.5068581Z (1%) are not. 2024-04-15T15:39:57.5072524Z See https://contributions.bioconductor.org/r-code.html 2024-04-15T15:39:57.5075583Z See styler package: https://cran.r-project.org/package=styler as 2024-04-15T15:39:57.5076468Z described in the BiocCheck vignette. 2024-04-15T15:39:57.5079270Z * Checking if package already exists in CRAN... 2024-04-15T15:39:58.0221665Z 'getOption("repos")' replaces Bioconductor standard repositories, see 2024-04-15T15:39:58.0222973Z 'help("repositories", package = "BiocManager")' for details. 2024-04-15T15:39:58.0223852Z Replacement repositories: 2024-04-15T15:39:58.0224391Z CRAN: https://cloud.r-project.org 2024-04-15T15:39:59.0811994Z 2024-04-15T15:39:59.0812797Z ─ BiocCheck results ── 2024-04-15T15:39:59.0817504Z 0 ERRORS | 0 WARNINGS | 5 NOTES 2024-04-15T15:39:59.0817908Z 2024-04-15T15:39:59.0822133Z See the plotgardener.BiocCheck folder and run 2024-04-15T15:39:59.0823542Z browseVignettes(package = 'BiocCheck') 2024-04-15T15:39:59.0824121Z for details. 2024-04-15T15:39:59.2938747Z Post job cleanup. 2024-04-15T15:39:59.2942408Z ##[command]/usr/bin/docker exec 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 sh -c "cat /etc/*release | grep ^ID" 2024-04-15T15:39:59.6589272Z [command]/usr/bin/tar --posix -z -cf cache.tgz -P -C /__w/plotgardener/plotgardener --files-from manifest.txt 2024-04-15T15:41:23.8604814Z Cache Size: ~977 MB (1024567637 B) 2024-04-15T15:41:23.9482592Z Cache saved successfully 2024-04-15T15:41:24.1165251Z Cache saved with key: cache-v1-Linux-biocversion-devel-r-devel-6efdd6abff11f6e23da0f970f1b0b42de40952a053b43aefe2e9d185de1a30f1 2024-04-15T15:41:24.1313054Z Post job cleanup. 2024-04-15T15:41:24.1316433Z ##[command]/usr/bin/docker exec 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 sh -c "cat /etc/*release | grep ^ID" 2024-04-15T15:41:24.3630503Z [command]/usr/bin/git version 2024-04-15T15:41:24.3688048Z git version 2.34.1 2024-04-15T15:41:24.3734780Z Temporarily overriding HOME='/__w/_temp/3d9f307d-b1ad-4fb8-a871-0ac1666a09c4' before making global git config changes 2024-04-15T15:41:24.3736228Z Adding repository directory to the temporary git global config as a safe directory 2024-04-15T15:41:24.3739951Z [command]/usr/bin/git config --global --add safe.directory /__w/plotgardener/plotgardener 2024-04-15T15:41:24.3782257Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2024-04-15T15:41:24.3823141Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :" 2024-04-15T15:41:24.4087891Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2024-04-15T15:41:24.4126440Z http.https://github.com/.extraheader 2024-04-15T15:41:24.4137053Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2024-04-15T15:41:24.4181071Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :" 2024-04-15T15:41:24.4634636Z Stop and remove container: 13075ce3795f434dabd74aa90a90f74f_bioconductorbioconductor_dockerdevel_e55861 2024-04-15T15:41:24.4640785Z ##[command]/usr/bin/docker rm --force 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 2024-04-15T15:41:24.7101994Z 001a8b7459781c09eb88ce716ff4367244ddd10b34371703f521158c7d358149 2024-04-15T15:41:24.7144824Z Remove container network: github_network_a42e48f0a7e5480499fc5f2869798a30 2024-04-15T15:41:24.7150193Z ##[command]/usr/bin/docker network rm github_network_a42e48f0a7e5480499fc5f2869798a30 2024-04-15T15:41:24.9702433Z github_network_a42e48f0a7e5480499fc5f2869798a30 2024-04-15T15:41:24.9863804Z Cleaning up orphan processes