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i am using dynamicbind package very frequently it is an excellent package and helped me a lot in my work but suddenly it started giving an error `(dynamicbind) kinshuk@kinshuk-lab:~/Desktop/Anupam/DynamicBind$ python run_single_protein_inference.py ./3sov/3sov_clean.pdb ./3sov/3sov_gen.csv --savings_per_complex 40 --inference_steps 20 --header test --python /home/kinshuk/anaconda3/envs/dynamicbind/bin/python --relax_python /home/kinshuk/anaconda3/envs/relax/bin/python
INFO:root:run_single_protein_inference.py ./3sov/3sov_clean.pdb ./3sov/3sov_gen.csv --savings_per_complex 40 --inference_steps 20 --header test --python /home/kinshuk/anaconda3/envs/dynamicbind/bin/python --relax_python /home/kinshuk/anaconda3/envs/relax/bin/python
2024_08_30_09_34
/home/kinshuk/Desktop/Anupam/DynamicBind/run_single_protein_inference.py /home/kinshuk/Desktop/Anupam/DynamicBind
100%|██████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 48.05it/s]
hub dir /home/kinshuk/Desktop/Anupam/DynamicBind/esm_models
Read data/prepared_for_esm_test.fasta with 1 sequences
Processing 1 of 1 batches (1 sequences)
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Aborted (core dumped)
inference complete.
Traceback (most recent call last):
File "/home/kinshuk/Desktop/Anupam/DynamicBind/relax_final.py", line 505, in
results_path_containments = sorted(os.listdir(args.results_path))
FileNotFoundError: [Errno 2] No such file or directory: 'results/test'
final step structure relax complete.
`
previously it was working properly but suddenly it started giving this error, can you please suggest any way out to this.
Thanks and regards
The text was updated successfully, but these errors were encountered:
i am using dynamicbind package very frequently it is an excellent package and helped me a lot in my work but suddenly it started giving an error `(dynamicbind) kinshuk@kinshuk-lab:~/Desktop/Anupam/DynamicBind$ python run_single_protein_inference.py ./3sov/3sov_clean.pdb ./3sov/3sov_gen.csv --savings_per_complex 40 --inference_steps 20 --header test --python /home/kinshuk/anaconda3/envs/dynamicbind/bin/python --relax_python /home/kinshuk/anaconda3/envs/relax/bin/python
INFO:root:run_single_protein_inference.py ./3sov/3sov_clean.pdb ./3sov/3sov_gen.csv --savings_per_complex 40 --inference_steps 20 --header test --python /home/kinshuk/anaconda3/envs/dynamicbind/bin/python --relax_python /home/kinshuk/anaconda3/envs/relax/bin/python
2024_08_30_09_34
/home/kinshuk/Desktop/Anupam/DynamicBind/run_single_protein_inference.py /home/kinshuk/Desktop/Anupam/DynamicBind
100%|██████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 48.05it/s]
hub dir /home/kinshuk/Desktop/Anupam/DynamicBind/esm_models
Read data/prepared_for_esm_test.fasta with 1 sequences
Processing 1 of 1 batches (1 sequences)
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Aborted (core dumped)
inference complete.
Traceback (most recent call last):
File "/home/kinshuk/Desktop/Anupam/DynamicBind/relax_final.py", line 505, in
results_path_containments = sorted(os.listdir(args.results_path))
FileNotFoundError: [Errno 2] No such file or directory: 'results/test'
final step structure relax complete.
`
previously it was working properly but suddenly it started giving this error, can you please suggest any way out to this.
Thanks and regards
The text was updated successfully, but these errors were encountered: