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Segmentation Faut (core dumped) #32

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Anupam-5 opened this issue Aug 30, 2024 · 1 comment
Open

Segmentation Faut (core dumped) #32

Anupam-5 opened this issue Aug 30, 2024 · 1 comment

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@Anupam-5
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i am using dynamicbind package very frequently it is an excellent package and helped me a lot in my work but suddenly it started giving an error `(dynamicbind) kinshuk@kinshuk-lab:~/Desktop/Anupam/DynamicBind$ python run_single_protein_inference.py ./3sov/3sov_clean.pdb ./3sov/3sov_gen.csv --savings_per_complex 40 --inference_steps 20 --header test --python /home/kinshuk/anaconda3/envs/dynamicbind/bin/python --relax_python /home/kinshuk/anaconda3/envs/relax/bin/python
INFO:root:run_single_protein_inference.py ./3sov/3sov_clean.pdb ./3sov/3sov_gen.csv --savings_per_complex 40 --inference_steps 20 --header test --python /home/kinshuk/anaconda3/envs/dynamicbind/bin/python --relax_python /home/kinshuk/anaconda3/envs/relax/bin/python
2024_08_30_09_34

/home/kinshuk/Desktop/Anupam/DynamicBind/run_single_protein_inference.py /home/kinshuk/Desktop/Anupam/DynamicBind
100%|██████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 48.05it/s]
hub dir /home/kinshuk/Desktop/Anupam/DynamicBind/esm_models
Read data/prepared_for_esm_test.fasta with 1 sequences
Processing 1 of 1 batches (1 sequences)
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Aborted (core dumped)
inference complete.
Traceback (most recent call last):
File "/home/kinshuk/Desktop/Anupam/DynamicBind/relax_final.py", line 505, in
results_path_containments = sorted(os.listdir(args.results_path))
FileNotFoundError: [Errno 2] No such file or directory: 'results/test'
final step structure relax complete.
`

previously it was working properly but suddenly it started giving this error, can you please suggest any way out to this.
Thanks and regards

@patjiang
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It seems that you are trying to store results to a path that does not exist. Try making that directory, then rerunning the code

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