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Using 2 stop bits fixes the corruption on a byte level, seems the UART has bug(s)?
XON/XOFF is hopeless due to 4K buffers in the FT2232H used on the Arty A7 Dev Board. I think you can reduce the FIFO depth on it, so that's the next option.
Added software flow control but the UART drops characters.
Add ILA into FPGA to better understand why.
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