FAIR Mappings Use Case submission

[saubin78]

The title of your use case

Mapping classes between Wheat Trait and Phenotype Ontology and the Wheat Ontology (CO_321)

Domain

Plant sciences

Purpose of the mapping

Discovery

Other purpose of the mapping

No response

Type of mapped resources

Wheat Trait and Phenotype Ontology (WTO)

• 753 traits and phenotypes
• Deep structure: 9 levels

Crop Ontology for wheat (CO_321)

• Observation variables
• trait +method+scale (Crop ontology model)
• 460 trait classes
• Flat structure: 3 levels

This mapping set is used to seamlessly retrieve information from two sources of experimental and scholarly articles data in the WheatIS and FAIDARE data discovery portals (https://urgi.versailles.inrae.fr/wheatis/, https://urgi.versailles.inrae.fr/faidare/ English

Links to an existing mappings

Nédellec, Claire; Evtimova, Mariya; Aubin, Sophie; Letellier, Thomas; Alaux, Michael; Sauvion, Clara; Pommier, Cyril, 2023, "Alignment of WTO and CO_321 ontology classes", https://doi.org/10.57745/ZLJYQO, Recherche Data Gouv, V4

Tools used for creating the mapping

Manual mappings following mapping rules defined with experts

Type of mapping relations

The representation of complex mappings (conditional, contextual, one to many) was not addressed but remains a need.

Full description: Claire Nédellec, Sophie Aubin, Clara Sauvion, Liliana Ibanescu, Sonia Bravo, et al.. Mapping bread wheat trait ontologies for semantic interoperability. 2024. hal-04717147

Examples (samples) of different types of mapping implementations

SSSOM tabular format

[matentzn]

Done!

https://mapping-commons.github.io/rda-fair-mappings/case-study/case-study-wheatontology/