diff --git a/doc/sphinx/index.rst b/doc/sphinx/index.rst index 820141f..a326147 100644 --- a/doc/sphinx/index.rst +++ b/doc/sphinx/index.rst @@ -15,7 +15,7 @@ Fast genome and metagenome distance estimation using MinHash Preprint =========== -Coming soon... +`"Fast genome and metagenome distance estimation using MinHash." Ondov et al. `_ .. toctree:: diff --git a/doc/sphinx/tutorials.rst b/doc/sphinx/tutorials.rst index ab8ae94..b58510e 100644 --- a/doc/sphinx/tutorials.rst +++ b/doc/sphinx/tutorials.rst @@ -53,8 +53,8 @@ reference (which there are two of in the sketch file): .. code:: - genome1.fasta genome3.fna 0 0 1000/1000 - genome2.fasta genome3.fna 0.0222766 0 456/1000 + genome1.fna genome3.fna 0 0 1000/1000 + genome2.fna genome3.fna 0.0222766 0 456/1000 Querying read sets against an existing RefSeq sketch ---------------------------------------------------- @@ -78,11 +78,10 @@ sketch as the query: .. code:: - mash dist -u refseq.msh reads.fastq.msh > distances.tab + mash dist refseq.msh reads.fastq.msh > distances.tab Sort the results to see the top hits and their p-values: .. code :: - sort -nk3 distances.tab | head - + sort -gk3 distances.tab | head