From 84c8980263a93d6c3dd422e82f55232d7cd76ae1 Mon Sep 17 00:00:00 2001 From: Adam Phillippy Date: Tue, 27 Oct 2015 19:56:12 -0400 Subject: [PATCH 1/3] link to preprint --- doc/sphinx/index.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/sphinx/index.rst b/doc/sphinx/index.rst index 820141f..a326147 100644 --- a/doc/sphinx/index.rst +++ b/doc/sphinx/index.rst @@ -15,7 +15,7 @@ Fast genome and metagenome distance estimation using MinHash Preprint =========== -Coming soon... +`"Fast genome and metagenome distance estimation using MinHash." Ondov et al. `_ .. toctree:: From 21231c5054996eb4287b70b61f3284821b91d8ee Mon Sep 17 00:00:00 2001 From: ondovb Date: Fri, 30 Oct 2015 15:31:26 -0400 Subject: [PATCH 2/3] Update tutorials.rst --- doc/sphinx/tutorials.rst | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/doc/sphinx/tutorials.rst b/doc/sphinx/tutorials.rst index ab8ae94..a21c62e 100644 --- a/doc/sphinx/tutorials.rst +++ b/doc/sphinx/tutorials.rst @@ -53,8 +53,8 @@ reference (which there are two of in the sketch file): .. code:: - genome1.fasta genome3.fna 0 0 1000/1000 - genome2.fasta genome3.fna 0.0222766 0 456/1000 + genome1.fna genome3.fna 0 0 1000/1000 + genome2.fna genome3.fna 0.0222766 0 456/1000 Querying read sets against an existing RefSeq sketch ---------------------------------------------------- @@ -78,11 +78,11 @@ sketch as the query: .. code:: - mash dist -u refseq.msh reads.fastq.msh > distances.tab + mash dist refseq.msh reads.fastq.msh > distances.tab Sort the results to see the top hits and their p-values: .. code :: - sort -nk3 distances.tab | head + sort -gk3 distances.tab | head From 12255d37e2398ff4003c5bc442d00e48c992a3c7 Mon Sep 17 00:00:00 2001 From: ondovb Date: Fri, 30 Oct 2015 15:35:01 -0400 Subject: [PATCH 3/3] Update tutorials.rst --- doc/sphinx/tutorials.rst | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/doc/sphinx/tutorials.rst b/doc/sphinx/tutorials.rst index a21c62e..b58510e 100644 --- a/doc/sphinx/tutorials.rst +++ b/doc/sphinx/tutorials.rst @@ -53,8 +53,8 @@ reference (which there are two of in the sketch file): .. code:: - genome1.fna genome3.fna 0 0 1000/1000 - genome2.fna genome3.fna 0.0222766 0 456/1000 + genome1.fna genome3.fna 0 0 1000/1000 + genome2.fna genome3.fna 0.0222766 0 456/1000 Querying read sets against an existing RefSeq sketch ---------------------------------------------------- @@ -85,4 +85,3 @@ Sort the results to see the top hits and their p-values: .. code :: sort -gk3 distances.tab | head -