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Heart_reduced.mdxv
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// Parameters for MorphoDynamX
[Main]
MDXVersion: 2.0
MDXRevision: 2-613-g46128500-dirty
ClearColor: 0
SurfOffset: 0.01
Slices: 1024
ScreenSampling: 1
TileCount: 20
MaxTexSize: 1024 1024 1024
DrawNormals: 0
DrawOffset: 1
DrawZeroLabels: 0
DrawNhbds: 0
DeleteBadVertex: false
CudaHoldMem: 0
MeshPointSize: 3
MeshLineWidth: 1
SeedStack: false
VoxelEditRadius: 25
VoxelEditMaxPix: 1024000
[Labels]
Color: 1 0 0 1
Color: 0 1 0 1
Color: 0 0 1 1
Color: 1 1 0 1
Color: 1 0 1 1
Color: 0 1 1 1
Color: 0.5 0 0 1
Color: 0 0.5 0 1
Color: 0 0 0.5 1
Color: 0.5 0 0.5 1
Color: 0.5 0.5 0 1
Color: 1 0 0.5 1
Color: 0.5 0.5 1 1
Color: 0 0.5 1 1
Color: 0.5 0 1 1
Color: 1 0.5 0 1
[Colors]
GeneralBackground: 0 0 0 1
GeneralClippingPlane1: 0.913725 0.913725 0.913725 1
GeneralClippingPlane2: 0.913725 0.913725 0.913725 1
GeneralClippingPlane3: 0.913725 0.913725 0.913725 1
GeneralCuttingSurface: 0.913725 0.913725 0.913725 1
GeneralLegend: 1 1 1 1
GeneralScaleBar: 1 1 1 1
GeneralEditedpixels: 1 1 1 1
Stack1Mesh: 1 1 0 1
Stack1Border: 0 1 1 1
Stack1Selection: 1 0 0 1
Stack1Celllabels: 1 1 1 1
Stack1StackBoundingBox: 0.501961 0.501961 0.501961 1
Stack2Mesh: 1 1 0 1
Stack2Border: 0 1 1 1
Stack2Selection: 1 0 0 1
Stack2Celllabels: 1 1 1 1
Stack2StackBoundingBox: 0.501961 0.501961 0.501961 1
[Main]
DrawClipBox: false
Spinning: 10000
FlySpeed: 0.005
Brightness: 0
Contrast: 1
Shininess: 32
Specular: 0.2
UnsharpStrength: 1
MaxNbPeels: 10
CameraFrame: 0.999997 -0.00246576 -0.00012429 0 0.00246634 0.999985 0.00490197 0 0.000112201 -0.00490226 0.999988 0 3.79341 32.981 -220.638 1
SceneRadius: 500
CameraZoom: -0.096
[Clip1]
Enable: false
Grid: false
Width: 89.9523
GridSize: 1
GridSquares: 3
GridColor: 11
Normal: 1 0 0
Frame: 0.995312 -0.0181279 0.0949974 0 0.0185368 0.999822 -0.00342328 0 -0.0949184 0.00516818 0.995472 0 1.4882 0.372049 -3.30446e-16 1
[Clip2]
Enable: false
Grid: false
Width: 89.9523
GridSize: 1
GridSquares: 3
GridColor: 12
Normal: 0 1 0
Frame: 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1
[Clip3]
Enable: false
Grid: false
Width: 89.9523
GridSize: 1
GridSquares: 3
GridColor: 13
Normal: 0 0 1
Frame: 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1
[Stack1]
StackFile:
WorkStackFile:
MeshFile: Heart_reduced.mdxm
MainShow: false
MainBright:1
MainOpacity:0.8
Main16Bit:false
MainLabels:false
WorkShow: false
WorkBright:1
WorkOpacity:0.8
Work16Bit:false
WorkLabels:false
SurfBright:1
SurfOpacity:1
SurfBlend:false
SurfCull:true
SurfShade:false
ShowTrans:false
ShowBBox:false
ShowScale:false
TieScales:true
ScaleX:1
ScaleY:1
ScaleZ:1
Scale:1.73205
LoadMeshScaleUm: true
LoadMeshTransform: false
MeshShift: 0
CCName: Tissue
MainColorMap: Interpolation:\srgb\nClamp:\strue\nExteriorColor:\s0,0,0,0\nColoredPos:\s0-0,0,0,0\nColoredPos:\s1-0,1,0,1\n
WorkColorMap: Interpolation:\srgb\nClamp:\strue\nExteriorColor:\s0,0,0,0\nColoredPos:\s0-0,0,0,0\nColoredPos:\s1-0,1,1,1\n
Frame: 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1
Trans: 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1
[Stack2]
StackFile:
WorkStackFile:
MeshFile:
MainShow: false
MainBright:1
MainOpacity:0.8
Main16Bit:false
MainLabels:false
WorkShow: false
WorkBright:1
WorkOpacity:0.8
Work16Bit:false
WorkLabels:false
SurfBright:1
SurfOpacity:1
SurfBlend:false
SurfCull:true
SurfShade:true
ShowTrans:false
ShowBBox:false
ShowScale:false
TieScales:true
ScaleX:1
ScaleY:1
ScaleZ:1
Scale:1.73205
LoadMeshScaleUm: true
LoadMeshTransform: false
MeshShift: 0
CCName:
MainColorMap: Interpolation:\srgb\nClamp:\strue\nExteriorColor:\s0,0,0,0\nColoredPos:\s0-0,0,0,0\nColoredPos:\s1-1,0,0,1\n
WorkColorMap: Interpolation:\srgb\nClamp:\strue\nExteriorColor:\s0,0,0,0\nColoredPos:\s0-0,0,0,0\nColoredPos:\s1-1,1,0,1\n
Frame: 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1
Trans: 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1
[Plane]
DrawCutSurf: false
Mode: 0
CutSurfGrid: false
Material: 0
Size: 1.03387 1.03387 1.03387
SurfSize: 15 15
LineWidth: 1
BezPoints: 5 5
Frame: 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1
BezPointList: -7.5 -7.5 0
BezPointList: -3.75 -7.5 0
BezPointList: 0 -7.5 0
BezPointList: 3.75 -7.5 0
BezPointList: 7.5 -7.5 0
BezPointList: -7.5 -3.75 0
BezPointList: -3.75 -3.75 0
BezPointList: 0 -3.75 0
BezPointList: 3.75 -3.75 0
BezPointList: 7.5 -3.75 0
BezPointList: -7.5 0 0
BezPointList: -3.75 0 0
BezPointList: 0 0 0
BezPointList: 3.75 0 0
BezPointList: 7.5 0 0
BezPointList: -7.5 3.75 0
BezPointList: -3.75 3.75 0
BezPointList: 0 3.75 0
BezPointList: 3.75 3.75 0
BezPointList: 7.5 3.75 0
BezPointList: -7.5 7.5 0
BezPointList: -3.75 7.5 0
BezPointList: 0 7.5 0
BezPointList: 3.75 7.5 0
BezPointList: 7.5 7.5 0
[ScaleBar]
AutoScale: true
Unit:m
MinSize: 50
MaxSize: 200
AutoUnit: true
Position: BottomRight
Direction: Horizontal
TextPosition: Out
Thickness: 5
ShiftBorder: 20 20
FontSize: 12
[ColorBar]
ScaleLength: 0.3
Width: 20
DistanceToBorder: 5
TextToBar: 5
TickSize: 2
ExpSize: 0.7
Epsilon: 1e-09
LineWidth: 2
Position: TopLeft
FontSize: 10
Orientation: Vertical
[Process]
ProcessName: Mesh/Attributes/Manage Attributes
NumParms: 1
ParmName: Mesh Id
ParmString: 0
ProcessName: Mesh/Attributes/Save Attributes to CSV
NumParms: 1
ParmName: Filename
ParmString:
ProcessName: Mesh/Axis/Clear Axis Attribute
NumParms: 2
ParmName: Axis Name
ParmString:
ParmName: Erase All
ParmString: All
ProcessName: Mesh/Axis/Load Axis Attribute
NumParms: 2
ParmName: Axis Name
ParmString:
ParmName: Input File
ParmString:
ProcessName: Mesh/Axis/Save Axis Attribute
NumParms: 2
ParmName: Axis Name
ParmString:
ParmName: Output File
ParmString:
ProcessName: Mesh/Axis/Set Axis Line Width
NumParms: 2
ParmName: Axis Name
ParmString:
ParmName: Width
ParmString: 2.0
ProcessName: Mesh/Cell Axis/Cell Axis Load
NumParms: 2
ParmName: Type
ParmString: PDG
ParmName: Input File
ParmString:
ProcessName: Mesh/Cell Axis/Cell Axis Save
NumParms: 1
ParmName: Output File
ParmString:
ProcessName: Mesh/Cell Axis/Fibril Orientations
NumParms: 5
ParmName: Border Size
ParmString: 1.0
ParmName: Min Ratio
ParmString: 0.25
ParmName: Blur Radius
ParmString: 1.0
ParmName: Scale
ParmString: 10.0
ParmName: Axis Name
ParmString: Fibril Orientation
ProcessName: Mesh/Cell Axis/Shape Analysis/Compute PCA 2D
NumParms: 5
ParmName: Display
ParmString: Ratio
ParmName: Heat Name
ParmString: PCA 2D
ParmName: Scale
ParmString: 2.0
ParmName: Line Width
ParmString: 2.0
ParmName: PCA Attribute
ParmString: PCA 2D
ProcessName: Mesh/Creation/Extrude Faces
NumParms: 2
ParmName: Complex Name Out
ParmString:
ParmName: Distance
ParmString: 1.0
ProcessName: Mesh/Creation/Extrude Triangles Parallel
NumParms: 4
ParmName: Complex Name
ParmString:
ParmName: Complex Name Out
ParmString:
ParmName: Distance
ParmString: 1.0
ParmName: Scaling
ParmString: 1.0
ProcessName: Mesh/Creation/Marching Cubes Surface
NumParms: 2
ParmName: Cube Size
ParmString: 5.0
ParmName: Threshold
ParmString: 5000
ProcessName: Mesh/Creation/Mesh Cutting Surface
NumParms: 0
ProcessName: Mesh/Heat Map/Heat Map
NumParms: 10
ParmName: Measure
ParmString: Geometry/Area
ParmName: Force Recalc
ParmString: Yes
ParmName: Change Map
ParmString: No
ParmName: Change Dir
ParmString: Increasing
ParmName: Change Type
ParmString: Ratio
ParmName: Growth Time
ParmString: 0.0001
ParmName: Custom Range
ParmString: No
ParmName: Range Min
ParmString: 0.0
ParmName: Range Max
ParmString: 1.0
ParmName: Heat Map
ParmString:
ProcessName: Mesh/Heat Map/Measures2D/Geometry/Area
NumParms: 1
ParmName: Heat Name
ParmString: Area
ProcessName: Mesh/Heat Map/Measures2D/Geometry/Neighbors
NumParms: 1
ParmName: Heat Name
ParmString: Neighbors
ProcessName: Mesh/Heat Map/Measures2D/Geometry/Perimeter
NumParms: 1
ParmName: Heat Name
ParmString: Perimeter
ProcessName: Mesh/Heat Map/Measures2D/Location/Associated Bezier X
NumParms: 1
ParmName: Heat Name
ParmString: Cell Wall Heat
ProcessName: Mesh/Heat Map/Measures2D/Location/Cell Distance
NumParms: 2
ParmName: Heat Name
ParmString: Cell Distance
ParmName: Wall Weights
ParmString: 1
ProcessName: Mesh/Heat Map/Measures2D/Shape/Bending
NumParms: 1
ParmName: Heat Name
ParmString: Bending
ProcessName: Mesh/Heat Map/Measures2D/Signal/Average
NumParms: 2
ParmName: Heat Name
ParmString: Average
ParmName: Signal
ParmString:
ProcessName: Mesh/Heat Map/Measures2D/Signal/Total
NumParms: 2
ParmName: Heat Name
ParmString: Total
ParmName: Signal
ParmString:
ProcessName: Mesh/Heat Map/Measures3D/Geometry/Cell Wall Area
NumParms: 1
ParmName: Heat Name
ParmString: Cell Wall Area
ProcessName: Mesh/Heat Map/Measures3D/Geometry/Volume
NumParms: 1
ParmName: Heat Name
ParmString: Volume
ProcessName: Mesh/Heat Map/Measures3D/Location/Associated Bezier X
NumParms: 1
ParmName: Heat Name
ParmString: Associated Bezier X
ProcessName: Mesh/Heat Map/Measures3D/Location/Distance To Bezier
NumParms: 2
ParmName: Heat Name
ParmString: Distance To Bezier
ParmName: Bezier Line
ParmString: No
ProcessName: Mesh/Heat Map/Measures3D/Location/Distance To Mesh
NumParms: 1
ParmName: Heat Name
ParmString: Distance To Mesh
ProcessName: Mesh/Heat Map/Measures3D/Signal/Average
NumParms: 2
ParmName: Heat Name
ParmString: Average
ParmName: Signal
ParmString:
ProcessName: Mesh/Heat Map/Measures3D/Signal/Total
NumParms: 2
ParmName: Heat Name
ParmString: Total
ParmName: Signal
ParmString:
ProcessName: Mesh/Heat Map/Measures3D/Test/Distance Attr Maps
NumParms: 3
ParmName: Heat Name
ParmString: Distance To Mesh
ParmName: Attr Map 1
ParmString:
ParmName: Attr Map 2
ParmString:
ProcessName: Mesh/Heat Map/Measures3D/Test/Heat Sum Cell Walls
NumParms: 3
ParmName: Mode
ParmString: Average
ParmName: Heat Name
ParmString: Cell Wall Heat
ParmName: Signal
ParmString:
ProcessName: Mesh/Heat Map/Measures3D/Test/Heat distance Nucleus
NumParms: 5
ParmName: Heat Name
ParmString: Cell Wall Heat
ParmName: Signal
ParmString:
ParmName: Ignore Z
ParmString: No
ParmName: Nucleus size threshold
ParmString: -1.0
ParmName: Filter
ParmString: 0.1
ProcessName: Mesh/Heat Map/Operators/Average
NumParms: 2
ParmName: Heat Name
ParmString:
ParmName: Labeling
ParmString:
ProcessName: Mesh/Heat Map/Operators/Combine
NumParms: 11
ParmName: Heat Map 1
ParmString: A1
ParmName: Heat Map 2
ParmString: A2
ParmName: Combination
ParmString: Yes
ParmName: Combination Type
ParmString: Addition (A + B)
ParmName: Transformation
ParmString: No
ParmName: Transformation Type
ParmString: Neighborhood
ParmName: Transformation Type 2
ParmString: Average
ParmName: Ignore Parent
ParmString: Yes
ParmName: Lower Threshold
ParmString: 0
ParmName: Upper Threshold
ParmString: 100000
ParmName: New Heat Map
ParmString:
ProcessName: Mesh/Heat Map/Operators/Percentile
NumParms: 3
ParmName: Heat Name
ParmString:
ParmName: Labeling
ParmString:
ParmName: Percentile
ParmString: 50.0
ProcessName: Mesh/Heat Map/Tools/Heat Map Load
NumParms: 3
ParmName: File Name
ParmString:
ParmName: Column
ParmString: 2
ParmName: Border Size
ParmString: 1.0
ProcessName: Mesh/Heat Map/Tools/Heat Map Save
NumParms: 5
ParmName: Heat Name
ParmString:
ParmName: Labeling
ParmString:
ParmName: File Name
ParmString:
ParmName: Use Selection
ParmString: No
ParmName: Export Labelings
ParmString: No
ProcessName: Mesh/Heat Map/Tools/Heat Map Scale
NumParms: 2
ParmName: Type
ParmString: Inverse
ParmName: Heat Name
ParmString:
ProcessName: Mesh/Heat Map/Tools/Select By Heat
NumParms: 3
ParmName: Lower Threshold
ParmString: 0.0
ParmName: Upper Threshold
ParmString: 1.0
ParmName: Reset Selection
ParmString: Yes
ProcessName: Mesh/Heat Map/Tools/Set Range
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ParmString:
ParmName: Max
ParmString:
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ParmName: File Name
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ParmName: Labeling
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ParmName: Index
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ParmName: Direction
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ParmString: 15.0
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ProcessName: Mesh/Selection/Select Vertices Extend
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ParmString:
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ParmString:
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ParmName: Zero Ref
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ParmName: Z Scale
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ParmName: Mesh Id
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ParmString:
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ProcessName: Mesh/System/Load
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ParmName: File Name
ParmString: /home/marco/trabajo/MDX models/Root/Heart_reduced.mdxm
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ParmName: Mesh Id
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ParmName: Old Name
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ParmName: New Name
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ParmName: Mesh Id
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ParmString:
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