Action fails to run notebook

[MathewBiddle]

https://github.com/marinebon/map-of-activities/actions/runs/7736796590/job/21094706544

Problem with:

jupyter nbconvert --to notebook --execute map-of-activities.ipynb --output=map-of-activities-output.ipynb

Error messages:

[NbConvertApp] ERROR | Kernel died while waiting for execute reply.
nbclient.exceptions.DeadKernelError: Kernel died

[MathewBiddle]

seems to run fine locally. Trying to rerun in actions now.

[MathewBiddle]

Still failing. https://github.com/marinebon/map-of-activities/actions/runs/7743934360

@ocefpaf any ideas?

We could reorganize this repo by moving the notebook code to a python script and running that. Would eliminate the need for jupyter nbconvert, which is what seems to be causing the problem. Would probably install and run faster too?

[ocefpaf]

which is what seems to be causing the problem.

Not sure...

Would probably install and run faster too?

That is true. You don't need/store the outputs of the notebook, right? I can try that in a PR right now. Hold on...

[MathewBiddle]

You don't need/store the outputs of the notebook, right?

We do. We write out index.html to https://github.com/marinebon/map-of-activities/tree/main/docs

Outputs inside the notebook? No.

[ocefpaf]

We can keep that with the script if we don't care about opening the notebook. Working on it.

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Edit: you can run that b/c you have an old env. Some updated dependency is causing a segfault. Fixing that and locking the env to avoid future regressions.