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TODO.md

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  • Figure FBA results

  • COPASI: use ids in results

  • COPASI: write correct values in results (amount/concentrations), see flag - | use_concentrations (bool): whether to return just the concentrations (default)

  • COPASI/roadrunner; consistent handling of time vector (add time as first column)

  • Roadrunner: write correct values in results (amount/concentration)

  • Figure ODE results

  • Filter delay models

  • Amici simulator

  • webpage with results/figures