From 34678a8b9889964c727f3e2726730c05611b900e Mon Sep 17 00:00:00 2001
From: Matt Rasmussen <rasmus@alum.mit.edu>
Date: Sat, 14 Sep 2013 21:20:24 -0700
Subject: [PATCH] small doc and make cleanups

---
 Makefile                     | 13 ++++++-------
 examples/example-analysis.sh |  2 +-
 test/test_codequality.py     |  4 ++--
 3 files changed, 9 insertions(+), 10 deletions(-)

diff --git a/Makefile b/Makefile
index 529a9704..f0286f94 100644
--- a/Makefile
+++ b/Makefile
@@ -47,7 +47,7 @@ PKG=$(DIST)/$(PKG_NAME)-$(PKG_VERSION).tar.gz
 PKG_DIR=$(DIST)/$(PKG_NAME)-$(PKG_VERSION)
 
 # program files
-SCRIPTS = 
+SCRIPTS = bin/*
 PROGS = bin/arg-sample
 BINARIES = $(PROGS) $(SCRIPTS)
 
@@ -109,6 +109,8 @@ LIBARGWEAVER_OBJS = $(ARGWEAVER_OBJS)
 #=============================================================================
 # targets
 
+.PHONY: all pkg test cq install clean cleanobj lib pylib
+
 # default targets
 all: $(PROGS) $(LIBARGWEAVER) $(LIBARGWEAVER_SHARED)
 
@@ -132,20 +134,17 @@ $(LIBARGWEAVER_SHARED): $(LIBARGWEAVER_OBJS)
 #-----------------------------
 # packaging
 
-pkg:
-	mkdir -p $(DIST)
-	git archive --format=tar --prefix=$(PKG_NAME)-$(PKG_VERSION)/ HEAD | \
-	gzip > $(PKG)	
+pkg: $(PKG)
 
 $(PKG):
 	mkdir -p $(DIST)
-	git archive --format=tar --prefix=$(PKG_NAME)-$(PKG_VERSION)/ | \
+	git archive --format=tar --prefix=$(PKG_NAME)-$(PKG_VERSION)/ HEAD | \
 	gzip > $(PKG)
 
 #-----------------------------
 # testing
 
-testing:
+test:
 	nosetests -v test
 
 cq:
diff --git a/examples/example-analysis.sh b/examples/example-analysis.sh
index 30398109..d494e1f7 100644
--- a/examples/example-analysis.sh
+++ b/examples/example-analysis.sh
@@ -8,7 +8,7 @@
 # commands work.
 #
 # For documentation on all of ARGweaver's file formats, see
-# doc/dlcoal_manual.html
+# doc/argweaver_manual.html
 #
 
 #=============================================================================
diff --git a/test/test_codequality.py b/test/test_codequality.py
index d714779a..868d3fbf 100644
--- a/test/test_codequality.py
+++ b/test/test_codequality.py
@@ -149,9 +149,9 @@ def test_pep8():
         raise Exception()
 
 
-def _test_arghmm():
+def test_arghmm():
     """
-    See if argweaver is used anywhere within the code.
+    See if arghmm is used anywhere within the code.
     """
 
     def key(line):