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assembly memory estimation #311

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mflynn-lanl opened this issue Oct 7, 2024 · 0 comments
Open

assembly memory estimation #311

mflynn-lanl opened this issue Oct 7, 2024 · 0 comments
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@mflynn-lanl
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enhancement New feature or request

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@mflynn-lanl
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Is your feature request related to a problem? Please describe.
Get estimate for the amount of memory required for assembly. Use this estimate to set memory field in runtime and fail the workflow if memory exceeds amount available on backend

Describe the solution you'd like
Create a task that gets the number of unique kmers for a fastq file

Additional context
Brian Foster has a shell script that we will use as a starting point
@mflynn-lanl mflynn-lanl added the enhancement New feature or request label Oct 7, 2024
@mflynn-lanl mflynn-lanl self-assigned this Oct 7, 2024
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