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add a condition to skip the opaver tool if there is no EC number. #330

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chienchi opened this issue Dec 13, 2024 · 0 comments
Open

add a condition to skip the opaver tool if there is no EC number. #330

chienchi opened this issue Dec 13, 2024 · 0 comments
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bug Something isn't working enhancement New feature or request

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@chienchi
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command <<<
set -euo pipefail
cp /opt/conda/envs/annotationVis/bin/opaver_anno.pl .
cp -r /opt/conda/envs/annotationVis/bin/ec_info ec_info
perl opaver_anno.pl -g ~{gff} -o ~{OUTPATH}/kegg_map
## make symlink to omics-pathway-viewer/data location
projectID=`basename ~{PROJPATH}`
ln -s ~{OUTPATH}/kegg_map ~{opaver_web_path}/$projectID

@chienchi chienchi added bug Something isn't working enhancement New feature or request labels Dec 13, 2024
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