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bug: annotations column not populated by ingest #1423

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naglepuff opened this issue Oct 18, 2024 · 1 comment · Fixed by #1428
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bug: annotations column not populated by ingest #1423

naglepuff opened this issue Oct 18, 2024 · 1 comment · Fixed by #1428
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This only affects the DEV environment.

I believe this was introduced by #1420.

This breaks ingest, since the annotations column of the omics_processing table is used to populate the multiomics column of the biosample table.

This might be a side effect of the upgrade to Pydantic v2.
@naglepuff naglepuff self-assigned this Oct 18, 2024
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There's also an issue with some of the columns on the MetagenomeAnnotation table. Some are incorrectly typed as ints

@naglepuff naglepuff mentioned this issue Oct 21, 2024
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2024 - Sprint 48 - October 21 - November 1, 2024
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Fix ingest post dependency upgrade microbiomedata/nmdc-server
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