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Add context to Metaproteomics analyses #1550

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kheal opened this issue Feb 25, 2025 · 1 comment
Open

Add context to Metaproteomics analyses #1550

kheal opened this issue Feb 25, 2025 · 1 comment

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@kheal
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kheal commented Feb 25, 2025

With the addition of the kaiko metaproteomics analysis option, we need a way to distinguish the data objects associated with two types of MetaproteomicsAnalysis records.

As is, if there are two MetaproteomicsAnalysis records associated with the same biosample with different values in the metaproteomics_analysis_category, they are displayed like below:

Image

We'd like to add an annotation line below each "Workflow Activity" line following the rules outlined below:

  • if the value for metaproteomics_analysis_category == matched_metagenome; display like below
    Workflow Activity: Metaproteomics Analysis Acvitivty for nmdc:wfmp-XX-XXXX;
    NMDC metagenome matched

OR

  • if the value for metaproteomics_analysis_category == in_silico_metagenome; display like below
    Workflow Activity: Metaproteomics Analysis Acvitivty for nmdc:wfmp-XX-XXXX;
    Uniprot reference genome matched

See slides 12 and 13 in https://docs.google.com/presentation/d/1ubYn0TMVNJ6VkG5UoQNns5NsJaqPUnro/edit?usp=sharing&ouid=107901205882214522292&rtpof=true&sd=true

@kheal kheal moved this to Todo in MetaProteomics Feb 26, 2025
@kheal
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kheal commented Feb 26, 2025

@naglepuff - I've (re)-loaded some mock data to dev-mongo today after it was overwritten during the last release. See details here: microbiomedata/issues#1082

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