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Zombie python process still running after interactive window or VS Code is closed #5485

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ortk95 opened this issue Apr 12, 2021 · 3 comments
Closed

Zombie python process still running after interactive window or VS Code is closed #5485

ortk95 opened this issue Apr 12, 2021 · 3 comments
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bug Issue identified by VS Code Team member as probable bug info-needed Issue requires more information from poster

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@ortk95
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ortk95 commented Apr 12, 2021 •
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Environment data

  • VS Code version: 1.55.1
  • Jupyter Extension version (available under the Extensions sidebar): 2021.5.702919634
  • Python Extension version (available under the Extensions sidebar): 2021.3.680753044
  • OS (Windows | Mac | Linux distro) and version: Mac OS Catalina (10.15.7)
  • Python and/or Anaconda version: python 3.9.1, conda 4.10.0
  • Type of virtual environment used: conda
  • Jupyter server running: Local

Expected behaviour

Python kernel process should be killed when the Jupyter interactive window is closed or VS code is closed.

Actual behaviour

The python process created by a Jupyter interactive window keeps running after VS Code is closed/quit. Once VS Code is closed, this zombie process appears to have about 100% CPU usage (i.e. it is using about 100% of one core on my Mac). The process continues with this high CPU usage indefinitely and has to be killed manually in Activity Monitor.

If I close the Jupyter interactive window in VS Code, the process only goes to 100% CPU when I subsequently close VS Code itself. The issue happens when I either close the VS Code window, or quit VS Code completely (right click > quit in dock).

Steps to reproduce:

  1. Launch VS Code
  2. Open Jupyter interactive window
  3. (Optionally close interactive window within VS Code)
  4. Close VS Code window / Quit VS Code completely
  5. The python process spawned by the Jupyter interactive window keeps running, using about 100% of one CPU core, and has to be manually killed in Activity Monitor

Logs

Output for Jupyter in the Output panel (View→Output, change the drop-down the upper-right of the Output panel to Jupyter) Output when opening VS Code, launching an interactive window, then closing it: 

User belongs to experiment group 'pythonJediLSP'
User belongs to experiment group 'jupyterTestcf'
User belongs to experiment group 'pythonDiscoveryModulecf'
User belongs to experiment group 'jupyterEnhancedDataViewer'
Info 2021-04-12 14:48:10: ZMQ install verified.
Info 2021-04-12 14:48:10: id is c60819d7-5109-46b0-8a02-e7c1732b9059
Info 2021-04-12 14:48:10: Attempting to start a server because of preload conditions ...
Info 2021-04-12 14:48:11: Found existing keyfile at /Users/ortk1/Library/Application Support/Code/User/globalStorage/ms-toolsai.jupyter/nbsecret
Info 2021-04-12 14:48:32: Loading webview. View is notset
Info 2021-04-12 14:48:32: Loading web view...
Info 2021-04-12 14:48:32: Webview panel created.
Info 2021-04-12 14:48:32: Waiting for jupyter server and web panel ...
Info 2021-04-12 14:48:32: Creating raw notebook for history://2a948200-5e10-4bf7-8f89-17ba6ba776b8
Info 2021-04-12 14:48:32: Getting preferred kernel for history://2a948200-5e10-4bf7-8f89-17ba6ba776b8
Info 2021-04-12 14:48:33: Search all interpreters /Users/ortk1/opt/anaconda3/bin/python, /Users/ortk1/opt/anaconda3/envs/isis/bin/python, /Users/ortk1/opt/anaconda3/envs/py38/bin/python, /Users/ortk1/opt/anaconda3/envs/py39/bin/python, /Users/ortk1/opt/anaconda3/envs/py39backup/bin/python, /opt/local/bin/python3.6, /usr/local/bin/python3, /usr/bin/python, /usr/bin/python3, /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Info 2021-04-12 14:48:33: Loading kernelspec from /Users/ortk1/opt/anaconda3/envs/py39/share/jupyter/kernels/python3/kernel.json for /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:33: Loading kernelspec from /Users/ortk1/opt/anaconda3/share/jupyter/kernels/python3/kernel.json for /Users/ortk1/opt/anaconda3/bin/python
Info 2021-04-12 14:48:33: Loading kernelspec from /Users/ortk1/opt/anaconda3/envs/py38/share/jupyter/kernels/python3/kernel.json for /Users/ortk1/opt/anaconda3/envs/py38/bin/python
Info 2021-04-12 14:48:33: Loading kernelspec from /Users/ortk1/opt/anaconda3/envs/py39backup/share/jupyter/kernels/python3/kernel.json for /Users/ortk1/opt/anaconda3/envs/py39backup/bin/python
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 3.9.1 64-bit ('py39': conda) is 121
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 3.8.5 64-bit ('base': conda) is 3
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 3.9.1 64-bit ('py39backup': conda) is 3
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 3.8.5 64-bit ('py38': conda) is 3
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 3.6.7 64-bit ('isis': conda) is 3
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 3.6.12 64-bit is 3
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 3.7.4 64-bit is 3
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 2.7.16 64-bit is 1
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 3.8.2 64-bit is 3
Info 2021-04-12 14:48:33: findPreferredKernel score for Python 2.7.16 64-bit is 1
Info 2021-04-12 14:48:33: Find kernel spec, Class name = D, completed in 430ms, has a truthy return value, Arg 1: <Uri:/Users/ortk1/Dropbox/PhD/code>, Arg 2: undefined, Arg 3: undefined, Return Value: {"kind":"startUsingPythonInterpreter","kernelSpec":{"specFile":"/Users/ortk1/opt/anaconda3/envs/py39/share/jupyter/kernels/python3/kernel.json","interpreterPath":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","name":"python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d","argv":["/Users/ortk1/opt/anaconda3/envs/py39/bin/python","-m","ipykernel_launcher","-f","{connection_file}"],"language":"python","path":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","display_name":"Python 3.9.1 64-bit ('py39': conda)"},"interpreter":{"architecture":3,"path":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","version":{"options":{"loose":false,"includePrerelease":false},"loose":false,"raw":"3.9.1-final","major":3,"minor":9,"patch":1,"prerelease":["final"],"build":[],"version":"3.9.1-final"},"sysVersion":"3.9.1 | packaged by conda-forge | (default, Jan 26 2021, 01:32:59) \n[Clang 11.0.1 ]","sysPrefix":"/Users/ortk1/opt/anaconda3/envs/py39","fileHash":"fabffa5f74e526a348fdbd7009fa2224ba2d6fb37e8d25ffcf94f42ddba259c1a4e01400970ce04e3168f63fefd52ef4e7caa36333029cf9ca71998233905cf0","companyDisplayName":"Anaconda, Inc.","envType":"Conda","envPath":"/Users/ortk1/opt/anaconda3/envs/py39","envName":"py39","displayName":"Python 3.9.1 64-bit ('py39': conda)"},"id":".python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d./Users/ortk1/opt/anaconda3/envs/py39/bin/python./Users/ortk1/opt/anaconda3/envs/py39/bin/python.Python 3.9.1 64-bit ('py39': conda)"}
Info 2021-04-12 14:48:33: Computing working directory history://2a948200-5e10-4bf7-8f89-17ba6ba776b8
Info 2021-04-12 14:48:33: Connecting to raw session for history://2a948200-5e10-4bf7-8f89-17ba6ba776b8 with connection {"kind":"startUsingPythonInterpreter","kernelSpec":{"specFile":"/Users/ortk1/opt/anaconda3/envs/py39/share/jupyter/kernels/python3/kernel.json","interpreterPath":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","name":"python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d","argv":["/Users/ortk1/opt/anaconda3/envs/py39/bin/python","-m","ipykernel_launcher","-f","{connection_file}"],"language":"python","path":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","display_name":"Python 3.9.1 64-bit ('py39': conda)"},"interpreter":{"architecture":3,"path":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","version":{"options":{"loose":false,"includePrerelease":false},"loose":false,"raw":"3.9.1-final","major":3,"minor":9,"patch":1,"prerelease":["final"],"build":[],"version":"3.9.1-final"},"sysVersion":"3.9.1 | packaged by conda-forge | (default, Jan 26 2021, 01:32:59) \n[Clang 11.0.1 ]","sysPrefix":"/Users/ortk1/opt/anaconda3/envs/py39","fileHash":"fabffa5f74e526a348fdbd7009fa2224ba2d6fb37e8d25ffcf94f42ddba259c1a4e01400970ce04e3168f63fefd52ef4e7caa36333029cf9ca71998233905cf0","companyDisplayName":"Anaconda, Inc.","envType":"Conda","envPath":"/Users/ortk1/opt/anaconda3/envs/py39","envName":"py39","displayName":"Python 3.9.1 64-bit ('py39': conda)"},"id":".python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d./Users/ortk1/opt/anaconda3/envs/py39/bin/python./Users/ortk1/opt/anaconda3/envs/py39/bin/python.Python 3.9.1 64-bit ('py39': conda)"}
Info 2021-04-12 14:48:33: Starting raw kernel Python 3.9.1 64-bit ('py39': conda)
Info 2021-04-12 14:48:33: installMissingDependencies /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:34: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py pip list
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py pip list
Info 2021-04-12 14:48:34: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
Info 2021-04-12 14:48:34: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
Info 2021-04-12 14:48:36: Web view react rendered
Info 2021-04-12 14:48:36: Searching for token colors ...
Info 2021-04-12 14:48:36: Attempting search for colors ...
Info 2021-04-12 14:48:36: Request for onigasm file at /Users/ortk1/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/out/client/node_modules/onigasm/lib/onigasm.wasm
Info 2021-04-12 14:48:36: Request for tmlanguage file.
Info 2021-04-12 14:48:36: Searching for token colors ...
Info 2021-04-12 14:48:36: Attempting search for colors ...
Info 2021-04-12 14:48:36: Searching for token colors ...
Info 2021-04-12 14:48:36: Attempting search for colors ...
Info 2021-04-12 14:48:36: Searching for token colors ...
Info 2021-04-12 14:48:36: Attempting search for colors ...
Info 2021-04-12 14:48:36: Install Missing Dependencies, Class name = v, completed in 3315ms, has a falsy return value, Return Value: undefined
Info 2021-04-12 14:48:36: Kernel launching with ports 9000,9001,9002,9003,9004. Start port is 9000
Info 2021-04-12 14:48:36: Launching kernel daemon for Python 3.9.1 64-bit ('py39': conda) # /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:36: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
Info 2021-04-12 14:48:36: Fetching interpreter variables of Conda environment to be used as env vars of Kernel
Info 2021-04-12 14:48:37: Creating daemon process for /Users/ortk1/opt/anaconda3/envs/py39/bin/python with env variables count 46
Info 2021-04-12 14:48:37: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py vscode_datascience_helpers.daemon --daemon-module=vscode_datascience_helpers.kernel_launcher_daemon -v
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py vscode_datascience_helpers.daemon --daemon-module=vscode_datascience_helpers.kernel_launcher_daemon -v
Info 2021-04-12 14:48:37: Python Daemon (pid: 15123): Execute rpc method prewarm_kernel in DS Daemon
Info 2021-04-12 14:48:37: Python Daemon (pid: 15123): Execute rpc method prewarm_kernel from /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:37: Python Daemon (pid: 15123): Pre-Warm DS Kernel in DS Kernel Launcher Daemon
Info 2021-04-12 14:48:37: Python Daemon (pid: 15123): Exec in DS Kernel Launcher Daemon (observable) ['/Users/ortk1/opt/anaconda3/envs/py39/bin/python', '/Users/ortk1/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/vscode_datascience_helpers/../pyvsc-run-isolated.py', '/Users/ortk1/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/vscode_datascience_helpers/kernel_prewarm_starter.py']
Info 2021-04-12 14:48:37: Python Daemon (pid: 15123): Exec in DS Kernel Launcher Daemon (observable)
Info 2021-04-12 14:48:37: Python Daemon (pid: 15123): Kernel launched, with PID 15126
Warn 2021-04-12 14:48:37: Python Daemon (pid: 15123): Waiting for Kernel to die 15126
Info 2021-04-12 14:48:37: Python Daemon (pid: 15123): Kernel launched, with PID as a daemon 15126
Info 2021-04-12 14:48:38: Searching for token colors ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading base colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Using colors to generate CSS ...
Info 2021-04-12 14:48:38: Loading colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading base colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Loading colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Searching for token colors ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Searching for token colors ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Searching for token colors ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Loading colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Loading colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Loading colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Using colors to generate CSS ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading base colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading base colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading base colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading base colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading base colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Got custom variables for Kernel owned by a conda interpreter
Info 2021-04-12 14:48:38: Python Daemon (pid: 15123): Execute rpc method start_prewarmed_kernel in DS Daemon
Info 2021-04-12 14:48:38: Python Daemon (pid: 15123): Execute rpc method start_prewarmed_kernel from /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:38: Python Daemon (pid: 15123): Start pre-warmed Kernel in DS Kernel Launcher Daemon 15126 with args ['ipykernel_launcher', '--ip=127.0.0.1', '--stdin=9003', '--control=9001', '--hb=9000', '--Session.signature_scheme="hmac-sha256"', '--Session.key=b"b03b1b8d-225a-46b4-9a17-e42c8f6fe917"', '--shell=9002', '--transport="tcp"', '--iopub=9004', '--f=/var/folders/_v/79yfn15n7kj6yzny_17g9lcm0019vf/T/tmp-1480273p5VExHEoMl.json']
Info 2021-04-12 14:48:38: Launching kernel daemon, Class name = h, completed in 1722ms, has a truthy return value, Arg 1: <Uri:/Users/ortk1/Dropbox/PhD/code>, Arg 2: "/Users/ortk1/Dropbox/PhD/code", Arg 3: {"specFile":"/Users/ortk1/opt/anaconda3/envs/py39/share/jupyter/kernels/python3/kernel.json","interpreterPath":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","name":"python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d","argv":["/Users/ortk1/opt/anaconda3/envs/py39/bin/python","-m","ipykernel_launcher","--ip=127.0.0.1","--stdin=9003","--control=9001","--hb=9000","--Session.signature_scheme=\"hmac-sha256\"","--Session.key=b\"b03b1b8d-225a-46b4-9a17-e42c8f6fe917\"","--shell=9002","--transport=\"tcp\"","--iopub=9004","--f=/var/folders/_v/79yfn15n7kj6yzny_17g9lcm0019vf/T/tmp-1480273p5VExHEoMl.json"],"language":"python","path":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","display_name":"Python 3.9.1 64-bit ('py39': conda)"}, Arg 4: {"architecture":3,"path":"/Users/ortk1/opt/anaconda3/envs/py39/bin/python","version":{"options":{"loose":false,"includePrerelease":false},"loose":false,"raw":"3.9.1-final","major":3,"minor":9,"patch":1,"prerelease":["final"],"build":[],"version":"3.9.1-final"},"sysVersion":"3.9.1 | packaged by conda-forge | (default, Jan 26 2021, 01:32:59) \n[Clang 11.0.1 ]","sysPrefix":"/Users/ortk1/opt/anaconda3/envs/py39","fileHash":"fabffa5f74e526a348fdbd7009fa2224ba2d6fb37e8d25ffcf94f42ddba259c1a4e01400970ce04e3168f63fefd52ef4e7caa36333029cf9ca71998233905cf0","companyDisplayName":"Anaconda, Inc.","envType":"Conda","envPath":"/Users/ortk1/opt/anaconda3/envs/py39","envName":"py39","displayName":"Python 3.9.1 64-bit ('py39': conda)"}, Return Value: <Return value cannot be serialized for logging>
Info 2021-04-12 14:48:38: Launching kernel in kernelProcess.ts, Class name = _, completed in 1722ms, has a truthy return value, Arg 1: "/Users/ortk1/Dropbox/PhD/code", Return Value: 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Info 2021-04-12 14:48:38: Attempting search for colors ...
Info 2021-04-12 14:48:38: Loading base colors from /Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/theme-defaults/themes/dark_plus.json ...
Info 2021-04-12 14:48:38: Using colors to generate CSS ...
Info 2021-04-12 14:48:38: Using colors to generate CSS ...
Info 2021-04-12 14:48:38: Using colors to generate CSS ...
Info 2021-04-12 14:48:38: Using colors to generate CSS ...
Info 2021-04-12 14:48:38: Using colors to generate CSS ...
Info 2021-04-12 14:48:38: Using colors to generate CSS ...
Info 2021-04-12 14:48:39: Creating daemon process for /Users/ortk1/opt/anaconda3/envs/py39/bin/python with env variables count 46
Info 2021-04-12 14:48:39: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py vscode_datascience_helpers.daemon --daemon-module=vscode_datascience_helpers.kernel_launcher_daemon -v
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py vscode_datascience_helpers.daemon --daemon-module=vscode_datascience_helpers.kernel_launcher_daemon -v
Info 2021-04-12 14:48:39: Python Daemon (pid: 15136): Execute rpc method prewarm_kernel in DS Daemon
Info 2021-04-12 14:48:39: Python Daemon (pid: 15136): Execute rpc method prewarm_kernel from /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:39: Python Daemon (pid: 15136): Pre-Warm DS Kernel in DS Kernel Launcher Daemon
Info 2021-04-12 14:48:39: Python Daemon (pid: 15136): Exec in DS Kernel Launcher Daemon (observable) ['/Users/ortk1/opt/anaconda3/envs/py39/bin/python', '/Users/ortk1/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/vscode_datascience_helpers/../pyvsc-run-isolated.py', '/Users/ortk1/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/vscode_datascience_helpers/kernel_prewarm_starter.py']
Info 2021-04-12 14:48:39: Python Daemon (pid: 15136): Exec in DS Kernel Launcher Daemon (observable)
Info 2021-04-12 14:48:39: Python Daemon (pid: 15136): Kernel launched, with PID 15137
Warn 2021-04-12 14:48:39: Python Daemon (pid: 15136): Waiting for Kernel to die 15137
Info 2021-04-12 14:48:39: Python Daemon (pid: 15136): Kernel launched, with PID as a daemon 15137
Info 2021-04-12 14:48:39: KernelProcess output: Content-Length: 358
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Info 2021-04-12 14:48:39: Python Daemon (pid: 15123): write to stderr: /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2196: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use 'hmac-sha256' instead of '"hmac-sha256"' – or use CUnicode.

Info 2021-04-12 14:48:39: KernelProcess output: Content-Length: 333
Content-Type: application/vscode-jsonrpc; charset=utf8

{"jsonrpc": "2.0", "method": "output", "params": {"source": "stderr", "out": "/Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2196: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use 'hmac-sha256' instead of '\"hmac-sha256\"' \u2013 or use CUnicode.\n"}}Content-Length: 115
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{"jsonrpc": "2.0", "method": "output", "params": {"source": "stderr", "out": "  warn(\n"}}
Warn 2021-04-12 14:48:39: Kernel 15123 as possibly died, StdErr from Kernel Process /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2196: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use 'hmac-sha256' instead of '"hmac-sha256"' – or use CUnicode.

Warn 2021-04-12 14:48:39: StdErr from Kernel Process /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2196: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use 'hmac-sha256' instead of '"hmac-sha256"' – or use CUnicode.

Info 2021-04-12 14:48:39: Python Daemon (pid: 15123): write to stderr:   warn(

Warn 2021-04-12 14:48:39: Kernel 15123 as possibly died, StdErr from Kernel Process   warn(

Warn 2021-04-12 14:48:39: StdErr from Kernel Process   warn(

Info 2021-04-12 14:48:39: Python Daemon (pid: 15123): write to stderr: /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2151: FutureWarning: Supporting extra quotes around Bytes is deprecated in traitlets 5.0. Use 'b03b1b8d-225a-46b4-9a17-e42c8f6fe917' instead of 'b"b03b1b8d-225a-46b4-9a17-e42c8f6fe917"'.

Warn 2021-04-12 14:48:39: Kernel 15123 as possibly died, StdErr from Kernel Process /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2151: FutureWarning: Supporting extra quotes around Bytes is deprecated in traitlets 5.0. Use 'b03b1b8d-225a-46b4-9a17-e42c8f6fe917' instead of 'b"b03b1b8d-225a-46b4-9a17-e42c8f6fe917"'.

Warn 2021-04-12 14:48:39: StdErr from Kernel Process /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2151: FutureWarning: Supporting extra quotes around Bytes is deprecated in traitlets 5.0. Use 'b03b1b8d-225a-46b4-9a17-e42c8f6fe917' instead of 'b"b03b1b8d-225a-46b4-9a17-e42c8f6fe917"'.

Info 2021-04-12 14:48:39: Python Daemon (pid: 15123): write to stderr:   warn(

Warn 2021-04-12 14:48:39: Kernel 15123 as possibly died, StdErr from Kernel Process   warn(

Warn 2021-04-12 14:48:39: StdErr from Kernel Process   warn(

Info 2021-04-12 14:48:39: Raw session started and connected
Started kernel Python 3.9.1 64-bit ('py39': conda)
Info 2021-04-12 14:48:39: Initial setup for history://2a948200-5e10-4bf7-8f89-17ba6ba776b8 starting ...
Info 2021-04-12 14:48:39: UpdateWorkingDirectoryAndPath
Info 2021-04-12 14:48:39: Kernel switching to busy
Info 2021-04-12 14:48:39: Kernel switching to idle
Info 2021-04-12 14:48:39: Starting raw kernel Python 3.9.1 64-bit ('py39': conda)
Info 2021-04-12 14:48:39: installMissingDependencies /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:39: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
Info 2021-04-12 14:48:39: Kernel switching to busy
Info 2021-04-12 14:48:39: Kernel switching to idle
Info 2021-04-12 14:48:39: Kernel switching to busy
Info 2021-04-12 14:48:39: Kernel switching to idle
Info 2021-04-12 14:48:39: Initial setup complete for history://2a948200-5e10-4bf7-8f89-17ba6ba776b8
Info 2021-04-12 14:48:39: Finished connecting 1c3cd39f-17d2-4c60-8717-f5bf828f1f6c
Info 2021-04-12 14:48:39: Registering commtarget jupyter.widget
Info 2021-04-12 14:48:39: Adding sys info for 91641b0f-839b-4f81-9c3a-c7e7923c7c98 0
Info 2021-04-12 14:48:39: Sys info for 91641b0f-839b-4f81-9c3a-c7e7923c7c98 0 complete
Error 2021-04-12 14:48:39: [Error: command 'python.analysis.restartLanguageServer' already exists
	at S.registerCommand (/Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/out/vs/workbench/services/extensions/node/extensionHostProcess.js:86:105496)
	at Object.registerCommand (/Users/ortk1/Applications/Visual Studio Code.app/Contents/Resources/app/out/vs/workbench/services/extensions/node/extensionHostProcess.js:95:21174)
	at c.registerCommand (/Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:80:165033)
	at new r (/Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:61:182791)
	at Object.t.resolveInstance (/Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:44:268557)
	at /Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:44:267523
	at Array.map (<anonymous>)
	at Object.t.resolveInstance (/Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:44:268327)
	at /Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:44:267523
	at Object.t.resolve (/Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:44:267786)
	at /Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:44:258362
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	at e.getNamed (/Users/ortk1/.vscode/extensions/ms-python.python-2021.3.680753044/out/client/extension.js:44:257023)
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Info 2021-04-12 14:48:40: Install Missing Dependencies, Class name = v, completed in 942ms, has a falsy return value, Return Value: undefined
Info 2021-04-12 14:48:40: Kernel launching with ports 9005,9006,9007,9008,9009. Start port is 9000
Info 2021-04-12 14:48:40: Launching kernel daemon for Python 3.9.1 64-bit ('py39': conda) # /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:40: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py -c "import ipykernel"
Info 2021-04-12 14:48:40: Fetching interpreter variables of Conda environment to be used as env vars of Kernel
Info 2021-04-12 14:48:40: Got custom variables for Kernel owned by a conda interpreter
Info 2021-04-12 14:48:40: Python Daemon (pid: 15136): Execute rpc method start_prewarmed_kernel in DS Daemon
Info 2021-04-12 14:48:40: Python Daemon (pid: 15136): Execute rpc method start_prewarmed_kernel from /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:40: Python Daemon (pid: 15136): Start pre-warmed Kernel in DS Kernel Launcher Daemon 15137 with args ['ipykernel_launcher', '--ip=127.0.0.1', '--stdin=9008', '--control=9006', '--hb=9005', '--Session.signature_scheme="hmac-sha256"', '--Session.key=b"c5d955a2-43a3-47d9-bcf7-6967f8ec72fe"', '--shell=9007', '--transport="tcp"', '--iopub=9009', '--f=/var/folders/_v/79yfn15n7kj6yzny_17g9lcm0019vf/T/tmp-14802SPTMe0DGkACW.json']
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Info 2021-04-12 14:48:40: Launching kernel in kernelProcess.ts, Class name = _, completed in 16ms, has a truthy return value, Arg 1: "/Users/ortk1/Dropbox/PhD/code", Return Value: 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Info 2021-04-12 14:48:40: KernelProcess output: Content-Length: 358
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Info 2021-04-12 14:48:40: Python Daemon (pid: 15136): write to stderr: /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2196: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use 'hmac-sha256' instead of '"hmac-sha256"' – or use CUnicode.

Warn 2021-04-12 14:48:40: Kernel 15136 as possibly died, StdErr from Kernel Process /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2196: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use 'hmac-sha256' instead of '"hmac-sha256"' – or use CUnicode.

Warn 2021-04-12 14:48:40: StdErr from Kernel Process /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2196: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use 'hmac-sha256' instead of '"hmac-sha256"' – or use CUnicode.

Info 2021-04-12 14:48:40: Python Daemon (pid: 15136): write to stderr:   warn(

Warn 2021-04-12 14:48:40: Kernel 15136 as possibly died, StdErr from Kernel Process   warn(

Warn 2021-04-12 14:48:40: StdErr from Kernel Process   warn(

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Info 2021-04-12 14:48:40: Python Daemon (pid: 15136): write to stderr: /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2151: FutureWarning: Supporting extra quotes around Bytes is deprecated in traitlets 5.0. Use 'c5d955a2-43a3-47d9-bcf7-6967f8ec72fe' instead of 'b"c5d955a2-43a3-47d9-bcf7-6967f8ec72fe"'.

Warn 2021-04-12 14:48:40: Kernel 15136 as possibly died, StdErr from Kernel Process /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2151: FutureWarning: Supporting extra quotes around Bytes is deprecated in traitlets 5.0. Use 'c5d955a2-43a3-47d9-bcf7-6967f8ec72fe' instead of 'b"c5d955a2-43a3-47d9-bcf7-6967f8ec72fe"'.

Warn 2021-04-12 14:48:40: StdErr from Kernel Process /Users/ortk1/opt/anaconda3/envs/py39/lib/python3.9/site-packages/traitlets/traitlets.py:2151: FutureWarning: Supporting extra quotes around Bytes is deprecated in traitlets 5.0. Use 'c5d955a2-43a3-47d9-bcf7-6967f8ec72fe' instead of 'b"c5d955a2-43a3-47d9-bcf7-6967f8ec72fe"'.

Info 2021-04-12 14:48:40: Python Daemon (pid: 15136): write to stderr:   warn(

Warn 2021-04-12 14:48:40: Kernel 15136 as possibly died, StdErr from Kernel Process   warn(

Warn 2021-04-12 14:48:40: StdErr from Kernel Process   warn(

Info 2021-04-12 14:48:41: Creating daemon process for /Users/ortk1/opt/anaconda3/envs/py39/bin/python with env variables count 46
Info 2021-04-12 14:48:41: Process Execution: > ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py vscode_datascience_helpers.daemon --daemon-module=vscode_datascience_helpers.kernel_launcher_daemon -v
> ~/opt/anaconda3/envs/py39/bin/python ~/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/pyvsc-run-isolated.py vscode_datascience_helpers.daemon --daemon-module=vscode_datascience_helpers.kernel_launcher_daemon -v
Info 2021-04-12 14:48:41: Python Daemon (pid: 15141): Execute rpc method prewarm_kernel in DS Daemon
Info 2021-04-12 14:48:41: Python Daemon (pid: 15141): Execute rpc method prewarm_kernel from /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:41: Python Daemon (pid: 15141): Pre-Warm DS Kernel in DS Kernel Launcher Daemon
Info 2021-04-12 14:48:41: Python Daemon (pid: 15141): Exec in DS Kernel Launcher Daemon (observable) ['/Users/ortk1/opt/anaconda3/envs/py39/bin/python', '/Users/ortk1/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/vscode_datascience_helpers/../pyvsc-run-isolated.py', '/Users/ortk1/.vscode/extensions/ms-toolsai.jupyter-2021.5.702919634/pythonFiles/vscode_datascience_helpers/kernel_prewarm_starter.py']
Info 2021-04-12 14:48:41: Python Daemon (pid: 15141): Exec in DS Kernel Launcher Daemon (observable)
Info 2021-04-12 14:48:41: Python Daemon (pid: 15141): Kernel launched, with PID 15142
Warn 2021-04-12 14:48:41: Python Daemon (pid: 15141): Waiting for Kernel to die 15142
Info 2021-04-12 14:48:41: Python Daemon (pid: 15141): Kernel launched, with PID as a daemon 15142
Info 2021-04-12 14:48:44: Attempting to start a server because of preload conditions ...
Info 2021-04-12 14:48:53: Shutting down session history://2a948200-5e10-4bf7-8f89-17ba6ba776b8
Info 2021-04-12 14:48:53: Shutdown session - current session
Info 2021-04-12 14:48:53: shutdownSession 5b907929-7d09-42fc-9f1a-893904644105, .python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d./Users/ortk1/opt/anaconda3/envs/py39/bin/python./Users/ortk1/opt/anaconda3/envs/py39/bin/python.Python 3.9.1 64-bit ('py39': conda) - start
Info 2021-04-12 14:48:53: Session can be shutdown .python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d./Users/ortk1/opt/anaconda3/envs/py39/bin/python./Users/ortk1/opt/anaconda3/envs/py39/bin/python.Python 3.9.1 64-bit ('py39': conda)
Info 2021-04-12 14:48:53: Dispose Kernel process
Info 2021-04-12 14:48:53: kill daemon
Info 2021-04-12 14:48:53: Closing interactive window: Interactive - #1
Info 2021-04-12 14:48:53: KernelProcess output: Content-Length: 132
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Info 2021-04-12 14:48:53: Python Daemon (pid: 15123): Execute rpc method kill_kernel in DS Daemon
Info 2021-04-12 14:48:53: KernelProcess output: Content-Length: 172
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Info 2021-04-12 14:48:53: Python Daemon (pid: 15123): Execute rpc method kill_kernel from /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:53: KernelProcess output: Content-Length: 43
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Info 2021-04-12 14:48:53: Python Daemon (pid: 15123): Kill kernel in DS Kernel Launcher Daemon
Info 2021-04-12 14:48:53: Python Daemon (pid: 15123): Kill kernel in DS Kernel Launcher Daemon, pid 15126
Info 2021-04-12 14:48:53: Dispose Kernel process
Info 2021-04-12 14:48:53: shutdownSession 5b907929-7d09-42fc-9f1a-893904644105, .python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d./Users/ortk1/opt/anaconda3/envs/py39/bin/python./Users/ortk1/opt/anaconda3/envs/py39/bin/python.Python 3.9.1 64-bit ('py39': conda) - shutdown complete
Info 2021-04-12 14:48:53: Dispose Kernel process
Info 2021-04-12 14:48:53: Shutdown session - get restart session
Info 2021-04-12 14:48:53: Shutdown session - shutdown restart session
Info 2021-04-12 14:48:53: shutdownSession 17cee829-a076-4cb8-80a7-1883e7802bda, .python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d./Users/ortk1/opt/anaconda3/envs/py39/bin/python./Users/ortk1/opt/anaconda3/envs/py39/bin/python.Python 3.9.1 64-bit ('py39': conda) - start
Info 2021-04-12 14:48:53: Session can be shutdown .python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d./Users/ortk1/opt/anaconda3/envs/py39/bin/python./Users/ortk1/opt/anaconda3/envs/py39/bin/python.Python 3.9.1 64-bit ('py39': conda)
Info 2021-04-12 14:48:53: Dispose Kernel process
Info 2021-04-12 14:48:53: kill daemon
Info 2021-04-12 14:48:53: KernelProcess Exit Exit - undefined 
Info 2021-04-12 14:48:53: KernelProcess output: Content-Length: 132
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{"jsonrpc": "2.0", "method": "log", "params": {"level": "INFO", "msg": "Kill kernel in DS Kernel Launcher Daemon", "pid": 15136}}Content-Length: 140
Content-Type: application/vscode-jsonrpc; charset=utf8

{"jsonrpc": "2.0", "method": "log", "params": {"level": "INFO", "msg": "Kill kernel in DS Kernel Launcher Daemon, pid 15137", "pid": 15136}}Content-Length: 43
Content-Type: application/vscode-jsonrpc; charset=utf8

{"jsonrpc": "2.0", "id": 3, "result": null}
Info 2021-04-12 14:48:53: Python Daemon (pid: 15136): Execute rpc method kill_kernel in DS Daemon
Info 2021-04-12 14:48:53: Python Daemon (pid: 15136): Execute rpc method kill_kernel from /Users/ortk1/opt/anaconda3/envs/py39/bin/python
Info 2021-04-12 14:48:53: Python Daemon (pid: 15136): Kill kernel in DS Kernel Launcher Daemon
Info 2021-04-12 14:48:53: Python Daemon (pid: 15136): Kill kernel in DS Kernel Launcher Daemon, pid 15137
Info 2021-04-12 14:48:53: Dispose Kernel process
Info 2021-04-12 14:48:53: shutdownSession 17cee829-a076-4cb8-80a7-1883e7802bda, .python391jvsc74a57bd0e29a4e2f4b6dfb67b7301aa04a049d4f2a6e81d9adee001f621849ba176a009d./Users/ortk1/opt/anaconda3/envs/py39/bin/python./Users/ortk1/opt/anaconda3/envs/py39/bin/python.Python 3.9.1 64-bit ('py39': conda) - shutdown complete
Info 2021-04-12 14:48:53: Dispose Kernel process
Info 2021-04-12 14:48:53: Shutdown session -- complete
Info 2021-04-12 14:48:53: KernelProcess Exit Exit - undefined

@ortk95 ortk95 added the bug Issue identified by VS Code Team member as probable bug label Apr 12, 2021
@joyceerhl
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Unfortunately I cannot reproduce this behavior. However this issue may be related: microsoft/vscode-python#15586. From that issue it seems like one workaround is adding the following to your user settings.json:

"python.experiments.optOutFrom": ["pythonJediLSP"]

Please could you try adding that? It's possible you're running into the same issue, as the Jupyter extension relies on the Python extension for Python interpreter discovery. Thank you!

@joyceerhl joyceerhl added the info-needed Issue requires more information from poster label Apr 13, 2021
@ortk95
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ortk95 commented Apr 13, 2021

Thanks very much! It looks like adding "python.experiments.optOutFrom": ["pythonJediLSP"] has fixed the issue.

@joyceerhl
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Awesome. Closing as a duplicate of microsoft/vscode-python#15586. Thank you for confirming!

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