v0.2.0

Change Log

New Functionality

• Added genome alignment & visualization CLI workflow

  • pgv-mummer: MUMmer pairwise genome alignment
  • pgv-mmseqs: MMseqs CDS RBH search in each genome
  • pgv-pmauve: progressiveMauve multiple genome alignment

• Added MMseqs, progressiveMauve alignment class

Minor Change

• Changed to plot link line if link width is 0
• Added track label color change option
• Changed to manage subtracks independently from other tracks

v0.1.1

Change Log

Minor Change

• Improved subtrack add method
• Changed that link track ratios can be set individually
• Added feature label margin (=0.1)

Bug Fix

• Fixed GC content & GC skew positions misalignment in calculation method
• Fixed incorrect zero-based & one-based position settings mixture (Unified to zero-based)

v0.1.0

First Official Release

pyGenomeViz is a genome visualization python package for comparative genomics implemented based on matplotlib.

• Basic functionality implementation is complete
• Still in the development stage