Update tests for DB release 2021-08-11.1

ncbi · Sep 28, 2021 · 5c99f2f · 5c99f2f
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diff --git a/test_both.expected b/test_both.expected
@@ -7,7 +7,7 @@ NA	contig04	1261	2391	+	blaEC	BlaEC family class C beta-lactamase	plus	AMR	AMR	B
 NA	contig08	101	700	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIAL_CONTIG_ENDX	200	286	69.93	100.00	200	WP_061158039.1	class A beta-lactamase TEM-156	NA	NA
 aph3pp-Ib_partial_5p_neg	contig09	1	675	-	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	PARTIAL_CONTIG_ENDP	225	275	81.82	100.00	225	WP_109545041.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NF032896.1	APH(3'') family aminoglycoside O-phosphotransferase
 sul2_partial_3p_neg	contig09	715	1377	-	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	PARTIAL_CONTIG_ENDP	221	271	81.55	100.00	221	WP_001043265.1	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA
-NA	contig10	486	1307	+	blaOXA	OXA-9 family class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	274	274	100.00	99.64	274	WP_000722315.1	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA
+NA	contig10	486	1307	+	blaOXA	class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	274	274	100.00	99.64	274	WP_000722315.1	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA
 blaTEM-internal_stop	contig11	113	547	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	144	286	50.35	97.22	144	WP_000027057.1	class A broad-spectrum beta-lactamase TEM-1	NA	NA
 qacR-curated_blast	contig12	71	637	+	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	188	188	100.00	99.47	188	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA
 emrD3-suppressed-in-vibrio	contig13	1	1137	+	emrD3	multidrug efflux MFS transporter EmrD-3	plus	AMR	AMR	EFFLUX	EFFLUX	EXACTP	379	379	100.00	100.00	379	ABQ18953.1	multidrug efflux MFS transporter EmrD-3	NA	NA

diff --git a/test_dna.expected b/test_dna.expected
@@ -7,7 +7,7 @@ NA	contig04	1261	2391	+	blaEC	BlaEC family class C beta-lactamase	plus	AMR	AMR	B
 NA	contig08	101	700	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIAL_CONTIG_ENDX	200	286	69.93	100.00	200	WP_061158039.1	class A beta-lactamase TEM-156	NA	NA
 NA	contig09	1	675	-	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	PARTIAL_CONTIG_ENDX	225	275	81.82	100.00	225	WP_109545041.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA
 NA	contig09	715	1377	-	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	PARTIAL_CONTIG_ENDX	221	271	81.55	100.00	221	WP_001043265.1	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA
-NA	contig10	486	1307	+	blaOXA	OXA-9 family class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	274	274	100.00	99.64	274	WP_000722315.1	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA
+NA	contig10	486	1307	+	blaOXA	class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	274	274	100.00	99.64	274	WP_000722315.1	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA
 NA	contig11	101	958	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	286	286	100.00	93.01	286	WP_061158039.1	class A beta-lactamase TEM-156	NA	NA
 NA	contig12	71	634	+	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTX	188	188	100.00	99.47	188	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA
 NA	contig13	1	1137	+	emrD3	multidrug efflux MFS transporter EmrD-3	plus	AMR	AMR	EFFLUX	EFFLUX	EXACTX	379	379	100.00	100.00	379	ABQ18953.1	multidrug efflux MFS transporter EmrD-3	NA	NA

diff --git a/test_dna_mut_all.expected b/test_dna_mut_all.expected
@@ -55,7 +55,6 @@ NA	contig15	2906	5810	+	23S_G2057G	Escherichia 23S ribosomal RNA [WILDTYPE]	core
 NA	contig15	2906	5810	+	23S_G2447G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	OXAZOLIDINONE	LINEZOLID	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
 NA	contig15	2906	5810	+	23S_T2609T	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	TELITHROMYCIN	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
 NA	contig15	2906	5810	+	23S_T754T	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
-NA	contig16	1	720	+	nfsA_E223E	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
 NA	contig16	1	720	+	nfsA_G131G	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
 NA	contig16	1	720	+	nfsA_K141STOP	Escherichia nitrofurantoin resistant NfsA	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
 NA	contig16	1	720	+	nfsA_Q44Q	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA