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Installing deprecated package in Dockerfile causes failure #137

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HDash opened this issue Dec 17, 2024 · 2 comments · Fixed by #138
Closed
2 tasks done

Installing deprecated package in Dockerfile causes failure #137

HDash opened this issue Dec 17, 2024 · 2 comments · Fixed by #138
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bug in dependency The root cause of the bug is in a dependency bug Something isn't working 🐳 Docker GitHub Actions Issue occurring on GitHub Actions

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@HDash
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HDash commented Dec 17, 2024

Checklist

  • I am able to reproduce the bug with the latest version
  • I checked, but didn't find any duplicates (open OR closed) of this issue in the repo

Affected version

1.0.2

Steps to reproduce the bug

rworkflows@master failing in GitHub action run (Ubuntu runner)

Actual behavior

#11 2.991 E: Package 'pandoc-citeproc' has no installation candidate
#11 ERROR: process "/bin/sh -c apt-get update &&     apt-get install -y     git-core     libcurl4-openssl-dev     libgit2-dev     libicu-dev     libssl-dev     make pandoc     pandoc-citeproc     zlib1g-dev   \txfonts-100dpi   \txfonts-75dpi   \tbiber   \tlibsbml5-dev   \tqpdf   \tcmake   \t&& apt-get clean     && rm -rf /var/lib/apt/lists/*" did not complete successfully: exit code: 100
------
 > [2/8] RUN apt-get update &&     apt-get install -y     git-core     libcurl4-openssl-dev     libgit2-dev     libicu-dev     libssl-dev     make pandoc     pandoc-citeproc     zlib1g-dev   	xfonts-100dpi   	xfonts-75dpi   	biber   	libsbml5-dev   	qpdf   	cmake   	&& apt-get clean     && rm -rf /var/lib/apt/lists/*:
------
process "/bin/sh -c apt-get update &&     apt-get install -y     git-core     libcurl4-openssl-dev     libgit2-dev     libicu-dev     libssl-dev     make pandoc     pandoc-citeproc     zlib1g-dev   \txfonts-100dpi   \txfonts-75dpi   \tbiber   \tlibsbml5-dev   \tqpdf   \tcmake   \t&& apt-get clean     && rm -rf /var/lib/apt/lists/*" did not complete successfully: exit code: 100
Error: exit status 1
Usage:
exit status 1
  github-actions build-push [flags]

Flags:
  -h, --help   help for build-push

Expected behavior

Docker image build completes without any error.

Session info

``` 2024-12-16T17:15:00.3329731Z �[1m�[36m─ Session info ───────────────────────────────────────────────────────────────────────────────────�[39m�[22m 2024-12-16T17:15:00.3330787Z �[3m�[90msetting �[39m�[23m �[3m�[90mvalue�[39m�[23m 2024-12-16T17:15:00.3331531Z version R Under development (unstable) (2024-12-10 r87437) 2024-12-16T17:15:00.3332204Z os Ubuntu 24.04.1 LTS 2024-12-16T17:15:00.3332736Z system x86_64, linux-gnu 2024-12-16T17:15:00.3333218Z ui X11 2024-12-16T17:15:00.3333695Z language (EN) 2024-12-16T17:15:00.3334080Z collate en_US.UTF-8 2024-12-16T17:15:00.3334536Z ctype en_US.UTF-8 2024-12-16T17:15:00.3335232Z tz UTC 2024-12-16T17:15:00.3335681Z date 2024-12-16 2024-12-16T17:15:00.3336126Z pandoc 3.6 @ /usr/bin/pandoc 2024-12-16T17:15:00.3336470Z 2024-12-16T17:15:00.3337213Z �[1m�[36m─ Packages ───────────────────────────────────────────────────────────────────────────────────────�[39m�[22m 2024-12-16T17:15:00.3338529Z �[3m�[90mpackage �[39m�[23m �[3m�[90m*�[39m�[23m 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@HDash HDash added the bug Something isn't working label Dec 17, 2024
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HDash commented Dec 17, 2024

pandoc-citeproc is now deprecated and should be removed from packages to be installed. All citeproc functionality is now integrated with pandoc.

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HDash commented Dec 17, 2024

Potentially the cause for issue #120

@HDash HDash added bug in dependency The root cause of the bug is in a dependency 🐳 Docker GitHub Actions Issue occurring on GitHub Actions labels Dec 17, 2024
@HDash HDash changed the title Installing deprecated package in Dockerfile causing failures Installing deprecated package in Dockerfile causes failure Dec 18, 2024
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